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Volumn 92, Issue 11, 2007, Pages 3755-3763

Quantifying robustness and dissipation cost of yeast cell cycle network: The funneled energy landscape perspectives

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BUDDING; CELL CYCLE; CELL CYCLE G1 PHASE; DEGRADATION KINETICS; ENERGY COST; ENERGY YIELD; LANDSCAPE; NATURAL SELECTION; NONHUMAN; PHASE TRANSITION; PROBABILITY; QUANTITATIVE ANALYSIS; STEADY STATE; YEAST; YEAST CELL;

EID: 34250320968     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.106.094821     Document Type: Article
Times cited : (64)

References (40)
  • 2
    • 0029790351 scopus 로고    scopus 로고
    • Ultrasensitivity in the mitogen-activated protein kinase cascade
    • Huang, C. Y., and J. E. Ferrell, Jr. 1996. Ultrasensitivity in the mitogen-activated protein kinase cascade. Proc. Natl. Acad. Sci. USA. 93:10078-10082.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 10078-10082
    • Huang, C.Y.1    Ferrell Jr., J.E.2
  • 3
    • 0034019315 scopus 로고    scopus 로고
    • Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
    • Kholodenko, B. N. 2000. Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades. Eur. J. Biochem. 267:1583-1593.
    • (2000) Eur. J. Biochem , vol.267 , pp. 1583-1593
    • Kholodenko, B.N.1
  • 5
  • 6
    • 0038513959 scopus 로고    scopus 로고
    • Scale-free networks
    • Barabasi, A. L., and E. Bonabeau. 2003. Scale-free networks. Sci. Am. 288:60-69.
    • (2003) Sci. Am , vol.288 , pp. 60-69
    • Barabasi, A.L.1    Bonabeau, E.2
  • 7
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • Maslov, S., and K. Sneppen. 2002. Specificity and stability in topology of protein networks. Science. 296:910-913.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 10
    • 0030787863 scopus 로고    scopus 로고
    • Modeling the control of DNA replication in fission yeast
    • Novak, B., and J. J. Tyson. 1997. Modeling the control of DNA replication in fission yeast. Proc. Natl. Acad. Sci. USA. 94:9147-9152.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9147-9152
    • Novak, B.1    Tyson, J.J.2
  • 11
    • 0025826876 scopus 로고
    • Modeling the cell division cycle: Cdc2 and cyclin interactions
    • Tyson, J. J. 1991. Modeling the cell division cycle: cdc2 and cyclin interactions. Proc. Natl. Acad. Sci. USA. 88:7328-7332.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 7328-7332
    • Tyson, J.J.1
  • 13
    • 0037418265 scopus 로고    scopus 로고
    • Stochastic gene expression as a many body problem
    • Sasai, M., and P. G. Wolynes. 2003. Stochastic gene expression as a many body problem. Proc. Natl. Acad. Sci. USA. 100:2374-2379.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 2374-2379
    • Sasai, M.1    Wolynes, P.G.2
  • 15
    • 0742288604 scopus 로고    scopus 로고
    • Potential in stochastic differential equations: Novel construction
    • Ao, P. 2004. Potential in stochastic differential equations: novel construction. J. Phys. A. Math. Gen. 37:L25-L30.
    • (2004) J. Phys. A. Math. Gen , vol.37
    • Ao, P.1
  • 16
    • 7644234438 scopus 로고    scopus 로고
    • Calculating biological behaviors of epigenetic states in the phage lambda life cycle
    • Zhu, X. M., L. Lan, L. Hood, and P. Ao. 2004. Calculating biological behaviors of epigenetic states in the phage lambda life cycle. Funct. Integr. Genomics. 4:188-195.
    • (2004) Funct. Integr. Genomics , vol.4 , pp. 188-195
    • Zhu, X.M.1    Lan, L.2    Hood, L.3    Ao, P.4
  • 17
    • 17244378347 scopus 로고    scopus 로고
    • Thermodynamics of stoichiometric biochemical networks far from equilibrium
    • Qian, H., and D. A. Bear. 2005. Thermodynamics of stoichiometric biochemical networks far from equilibrium. Biophys. Chem. 114:213-220.
    • (2005) Biophys. Chem , vol.114 , pp. 213-220
    • Qian, H.1    Bear, D.A.2
  • 18
    • 18144407314 scopus 로고    scopus 로고
    • Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch
    • Qian, H., and T. C. Reluga. 2005. Nonequilibrium thermodynamics and nonlinear kinetics in a cellular signaling switch. Phys. Rev. Lett. 94:028101-028104.
    • (2005) Phys. Rev. Lett , vol.94 , pp. 028101-028104
    • Qian, H.1    Reluga, T.C.2
  • 20
    • 33748455499 scopus 로고    scopus 로고
    • Funneled landscape leads to robustness of cellular network: MAP kinase signal transduction
    • Wang, J., B. Huang, X. F. Xia, and Z. R. Sun. 2006. Funneled landscape leads to robustness of cellular network: MAP kinase signal transduction. Biophys. J. Lett. 91:L54-L57.
    • (2006) Biophys. J. Lett , vol.91
    • Wang, J.1    Huang, B.2    Xia, X.F.3    Sun, Z.R.4
  • 21
    • 33751411334 scopus 로고    scopus 로고
    • Funneled landscape leads to robustness of cell networks: Yeast cell cycle
    • e147:1385
    • Wang, J., B. Huang, X. F. Xia, and Z. R. Sun. 2006. Funneled landscape leads to robustness of cell networks: yeast cell cycle. PLOS Comput. Biol. e147:1385.
    • (2006) PLOS Comput. Biol
    • Wang, J.1    Huang, B.2    Xia, X.F.3    Sun, Z.R.4
  • 22
    • 34047225832 scopus 로고    scopus 로고
    • Potential landscape and robustness of a gene regulatory network: Toggle switch
    • In press
    • Kim, K., and J. Wang. 2007. Potential landscape and robustness of a gene regulatory network: toggle switch. PLOS Comp. Biol. In press.
    • (2007) PLOS Comp. Biol
    • Kim, K.1    Wang, J.2
  • 24
    • 0026320866 scopus 로고
    • The energy landscapes and motions of proteins
    • Frauenfelder, H., S. G. Sligar, and P. G. Wolynes. 1991. The energy landscapes and motions of proteins. Science. 254:1598-1603.
    • (1991) Science , vol.254 , pp. 1598-1603
    • Frauenfelder, H.1    Sligar, S.G.2    Wolynes, P.G.3
  • 25
    • 0031029852 scopus 로고    scopus 로고
    • Stochastic mechanisms in gene expression
    • McAdams, H. H., and A. Arkin. 1997. Stochastic mechanisms in gene expression. Proc. Natl. Acad. Sci. USA. 94:814-819.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 814-819
    • McAdams, H.H.1    Arkin, A.2
  • 26
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz, M. B., and S. Leibler. 2000. A synthetic oscillatory network of transcriptional regulators. Nature. 403:335-338.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 27
    • 0036790975 scopus 로고    scopus 로고
    • Intrinsic and extrinsic contributions to stochasticity in gene expression
    • Swain, P. S., M. B. Elowitz, and E. D. Siggia. 2002. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc. Natl. Acad. Sci. USA. 99:12795-12800.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12795-12800
    • Swain, P.S.1    Elowitz, M.B.2    Siggia, E.D.3
  • 29
    • 0037936613 scopus 로고    scopus 로고
    • Modeling network dynamics: The lac operon, a case study
    • Vilar, J. M. G., C. C. Guet, and S. Leibler. 2003. Modeling network dynamics: the lac operon, a case study. J. Cell Biol. 161:471-476.
    • (2003) J. Cell Biol , vol.161 , pp. 471-476
    • Vilar, J.M.G.1    Guet, C.C.2    Leibler, S.3
  • 30
    • 0842285841 scopus 로고    scopus 로고
    • Summing up the noise in gene networks
    • Paulsson, J. 2004. Summing up the noise in gene networks. Nature. 427:415-418.
    • (2004) Nature , vol.427 , pp. 415-418
    • Paulsson, J.1
  • 32
    • 0003827228 scopus 로고
    • Springer-Verlag Publishers, Heidelberg, Germany
    • Freedman, D. 1983. Markov Chains. Springer-Verlag Publishers, Heidelberg, Germany.
    • (1983) Markov Chains
    • Freedman, D.1
  • 33
    • 34250311672 scopus 로고
    • Chapman and Hall Publishers, New York
    • Davis, M. H. A. 1993. Markov Models. Chapman and Hall Publishers, New York.
    • (1993) Markov Models
    • Davis, M.H.A.1
  • 34
    • 33646432245 scopus 로고    scopus 로고
    • Stochastic model of coliphage lambda regulatory network
    • Wang, S., Y. Zhang, and Q. Ouyang. 2006. Stochastic model of coliphage lambda regulatory network. Phys. Rev. E. 73:041922-1-041922-5.
    • (2006) Phys. Rev. E , vol.73
    • Wang, S.1    Zhang, Y.2    Ouyang, Q.3
  • 35
    • 0020118274 scopus 로고
    • Neural networks and physical systems with emergent collective computational abilities
    • Hopfield, J. J. 1982. Neural networks and physical systems with emergent collective computational abilities. Proc. Natl. Acad. Sci. USA. 79:2554-2558.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 2554-2558
    • Hopfield, J.J.1
  • 39
    • 0038266221 scopus 로고    scopus 로고
    • Energy landscape theory, funnels, specificity and optimal criterion of biomolecular binding
    • Wang, J., and G. M. Verkhivker. 2003. Energy landscape theory, funnels, specificity and optimal criterion of biomolecular binding. Phys. Rev. Lett. 90:188101-188104.
    • (2003) Phys. Rev. Lett , vol.90 , pp. 188101-188104
    • Wang, J.1    Verkhivker, G.M.2
  • 40
    • 0028765255 scopus 로고
    • Modeling approach to control of carbohydrate metabolism during citric acid accumulation by Aspergillus niger. I. Model definition and stability of the steady state
    • Torres, N. V. 1994. Modeling approach to control of carbohydrate metabolism during citric acid accumulation by Aspergillus niger. I. Model definition and stability of the steady state. Biotechnol. Bioeng. 44:104-110.
    • (1994) Biotechnol. Bioeng , vol.44 , pp. 104-110
    • Torres, N.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.