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Volumn 365, Issue 1, 2007, Pages 60-69

Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes

Author keywords

Annotation of topoisomerase sites; Sequence specific recognition; Topoisomerase IB; Variola virus

Indexed keywords

DNA TOPOISOMERASE;

EID: 34250175468     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2007.02.037     Document Type: Article
Times cited : (12)

References (34)
  • 1
    • 0017710154 scopus 로고
    • A DNA nicking-closing enzyme encapsidated in vaccinia virus: partial purification and properties
    • Bauer W.R., Ressner E.C., Kates J., and Patzke J.V. A DNA nicking-closing enzyme encapsidated in vaccinia virus: partial purification and properties. Proc. Natl. Acad. Sci. U.S.A. 74 5 (1977) 1841-1845
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , Issue.5 , pp. 1841-1845
    • Bauer, W.R.1    Ressner, E.C.2    Kates, J.3    Patzke, J.V.4
  • 2
    • 33645087776 scopus 로고    scopus 로고
    • Characterization of mimivirus DNA topoisomerase IB suggests horizontal gene transfer between eukaryal viruses and bacteria
    • Benarroch D., Claverie J.M., Raoult D., and Shuman S. Characterization of mimivirus DNA topoisomerase IB suggests horizontal gene transfer between eukaryal viruses and bacteria. J. Virol. 80 1 (2006) 314-321
    • (2006) J. Virol. , vol.80 , Issue.1 , pp. 314-321
    • Benarroch, D.1    Claverie, J.M.2    Raoult, D.3    Shuman, S.4
  • 3
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: structure, function, and mechanism
    • Champoux J.J. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70 (2001) 369-413
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 4
    • 0032496228 scopus 로고    scopus 로고
    • A catalytic domain of eukaryotic DNA topoisomerase I
    • Cheng C., and Shuman S. A catalytic domain of eukaryotic DNA topoisomerase I. J. Biol. Chem. 273 (1998) 11589-11595
    • (1998) J. Biol. Chem. , vol.273 , pp. 11589-11595
    • Cheng, C.1    Shuman, S.2
  • 5
    • 0032549763 scopus 로고    scopus 로고
    • Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
    • Cheng C., Kussie P., Pavletich N., and Shuman S. Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases. Cell 92 (1998) 841-850
    • (1998) Cell , vol.92 , pp. 841-850
    • Cheng, C.1    Kussie, P.2    Pavletich, N.3    Shuman, S.4
  • 6
    • 0141594578 scopus 로고    scopus 로고
    • Poxvirus DNA topoisomerase knockout mutant exhibits decreased infectivity associated with reduced early transcription
    • Da Fonseca F., and Moss B. Poxvirus DNA topoisomerase knockout mutant exhibits decreased infectivity associated with reduced early transcription. Proc. Natl. Acad. Sci. U.S.A. 100 20 (2003) 11291-11296
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , Issue.20 , pp. 11291-11296
    • Da Fonseca, F.1    Moss, B.2
  • 8
    • 1642421758 scopus 로고    scopus 로고
    • Poxvirus genomes: a phylogenetic analysis
    • Gubser C., Hue S., Kellam P., and Smith G.L. Poxvirus genomes: a phylogenetic analysis. J. Gen. Virol. 85 Pt. 1 (2004) 105-117
    • (2004) J. Gen. Virol. , vol.85 , Issue.PART 1 , pp. 105-117
    • Gubser, C.1    Hue, S.2    Kellam, P.3    Smith, G.L.4
  • 9
    • 0031925050 scopus 로고    scopus 로고
    • Molluscum contagiosum virus topoisomerase: purification, activities and response to inhibitors
    • Hwang Y., Wang B., and Bushman F.D. Molluscum contagiosum virus topoisomerase: purification, activities and response to inhibitors. J. Virol. 72 (1998) 3401-3406
    • (1998) J. Virol. , vol.72 , pp. 3401-3406
    • Hwang, Y.1    Wang, B.2    Bushman, F.D.3
  • 10
    • 0033515571 scopus 로고    scopus 로고
    • DNA contacts stimulate catalysis by a poxvirus topoisomerase
    • Hwang Y., Burgin A., and Bushman F.D. DNA contacts stimulate catalysis by a poxvirus topoisomerase. J. Biol. Chem. 274 (1999) 9160-9168
    • (1999) J. Biol. Chem. , vol.274 , pp. 9160-9168
    • Hwang, Y.1    Burgin, A.2    Bushman, F.D.3
  • 11
    • 0033619165 scopus 로고    scopus 로고
    • Domain structure of the type-1B topoisomerase encoded by molluscum contagiosum virus
    • Hwang Y., Park M., Fischer W.H., and Bushman F. Domain structure of the type-1B topoisomerase encoded by molluscum contagiosum virus. Virology 262 (1999) 479-491
    • (1999) Virology , vol.262 , pp. 479-491
    • Hwang, Y.1    Park, M.2    Fischer, W.H.3    Bushman, F.4
  • 12
    • 0032977819 scopus 로고    scopus 로고
    • Mechanism of inhibition of a poxvirus topoisomerase by the marine natural product sansalvamide A
    • Hwang Y., Rowley D., Rhodes D., Gertsch J., Fenical W., and Bushman F.D. Mechanism of inhibition of a poxvirus topoisomerase by the marine natural product sansalvamide A. Mol. Pharmacol. 55 (1999) 1049-1053
    • (1999) Mol. Pharmacol. , vol.55 , pp. 1049-1053
    • Hwang, Y.1    Rowley, D.2    Rhodes, D.3    Gertsch, J.4    Fenical, W.5    Bushman, F.D.6
  • 13
    • 0034672040 scopus 로고    scopus 로고
    • Rapid microtiter assays for poxvirus topoisomerase, mammalian type IB topoisomerase, and HIV integrase: application to inhibitor isolation
    • Hwang Y., Rhodes D., and Bushman F.D. Rapid microtiter assays for poxvirus topoisomerase, mammalian type IB topoisomerase, and HIV integrase: application to inhibitor isolation. Nucleic Acids Res. 28 (2000) 4884-4892
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4884-4892
    • Hwang, Y.1    Rhodes, D.2    Bushman, F.D.3
  • 16
    • 15844383117 scopus 로고    scopus 로고
    • Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB
    • Koster D.A., Croquette V., Dekker C., Shuman S., and Dekker N.H. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature 434 7033 (2005) 671-674
    • (2005) Nature , vol.434 , Issue.7033 , pp. 671-674
    • Koster, D.A.1    Croquette, V.2    Dekker, C.3    Shuman, S.4    Dekker, N.H.5
  • 17
    • 0037133321 scopus 로고    scopus 로고
    • A poxvirus-like type IB topoisomerase family in bacteria
    • Krogh B.O., and Shuman S. A poxvirus-like type IB topoisomerase family in bacteria. Proc. Natl. Acad. Sci. U.S.A. 99 4 (2002) 1853-1858
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , Issue.4 , pp. 1853-1858
    • Krogh, B.O.1    Shuman, S.2
  • 18
    • 0033604641 scopus 로고    scopus 로고
    • Melanoplus sanguinipes entomopox DNA topoisomerase: site-specific DNA transesterification and effects of 5′ bridging phosphorothiolates
    • Krogh B.O., Cheng C., Burgin A., and Shuman S. Melanoplus sanguinipes entomopox DNA topoisomerase: site-specific DNA transesterification and effects of 5′ bridging phosphorothiolates. Virology 25 (1999) 441-451
    • (1999) Virology , vol.25 , pp. 441-451
    • Krogh, B.O.1    Cheng, C.2    Burgin, A.3    Shuman, S.4
  • 19
    • 0037016262 scopus 로고    scopus 로고
    • 19F NMR studies of vaccinia type IB topoisomerase. Conformational dynamics of the bound DNA substrate
    • Kwon K., Jiang Y.L., Song F., and Stivers J.T. 19F NMR studies of vaccinia type IB topoisomerase. Conformational dynamics of the bound DNA substrate. J. Biol. Chem. 277 (2002) 353-358
    • (2002) J. Biol. Chem. , vol.277 , pp. 353-358
    • Kwon, K.1    Jiang, Y.L.2    Song, F.3    Stivers, J.T.4
  • 20
    • 0020554566 scopus 로고
    • Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling
    • Menzel R., and Gellert M. Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling. Cell 34 1 (1983) 105-113
    • (1983) Cell , vol.34 , Issue.1 , pp. 105-113
    • Menzel, R.1    Gellert, M.2
  • 22
    • 0030586050 scopus 로고    scopus 로고
    • SFV topoisomerase: sequence specificity in a genetically mapped interval
    • Palaniyar N., Fisher C., Parks R., and Evans D.H. SFV topoisomerase: sequence specificity in a genetically mapped interval. Virology 221 2 (1996) 351-354
    • (1996) Virology , vol.221 , Issue.2 , pp. 351-354
    • Palaniyar, N.1    Fisher, C.2    Parks, R.3    Evans, D.H.4
  • 23
    • 33746410027 scopus 로고    scopus 로고
    • Structural basis for specificity in the poxvirus topoisomerase
    • Perry K., Hwang Y., Bushman F.D., and Van Duyne G. Structural basis for specificity in the poxvirus topoisomerase. Mol. Cell 23 (2006) 343-354
    • (2006) Mol. Cell , vol.23 , pp. 343-354
    • Perry, K.1    Hwang, Y.2    Bushman, F.D.3    Van Duyne, G.4
  • 24
    • 0030993708 scopus 로고    scopus 로고
    • Characterization of a DNA topoisomerase encoded by Amsacta moorei Entomopoxvirus
    • Petersen B.O., Hall R.L., Moyer R.W., and Shuman S. Characterization of a DNA topoisomerase encoded by Amsacta moorei Entomopoxvirus. Virology 230 (1997) 197-206
    • (1997) Virology , vol.230 , pp. 197-206
    • Petersen, B.O.1    Hall, R.L.2    Moyer, R.W.3    Shuman, S.4
  • 25
    • 0028130224 scopus 로고
    • Vaccinia topoisomerase binds circumferentially to DNA
    • Sekiguchi J., and Shuman S. Vaccinia topoisomerase binds circumferentially to DNA. J. Biol. Chem. 269 (1994) 31731-31734
    • (1994) J. Biol. Chem. , vol.269 , pp. 31731-31734
    • Sekiguchi, J.1    Shuman, S.2
  • 26
    • 0025964516 scopus 로고
    • Site-specific DNA cleavage by vaccinia virus DNA topoisomerase I: role of nucleotide sequence and secondary structure
    • Shuman S. Site-specific DNA cleavage by vaccinia virus DNA topoisomerase I: role of nucleotide sequence and secondary structure. J. Biol. Chem. 266 (1991) 1796-1803
    • (1991) J. Biol. Chem. , vol.266 , pp. 1796-1803
    • Shuman, S.1
  • 27
    • 0032190562 scopus 로고    scopus 로고
    • Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme
    • Shuman S. Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme. Biochim. Biophys. Acta 1400 (1998) 321-339
    • (1998) Biochim. Biophys. Acta , vol.1400 , pp. 321-339
    • Shuman, S.1
  • 28
    • 0025144958 scopus 로고
    • Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I
    • Shuman S., and Prescott J. Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I. J. Biol. Chem. 265 (1990) 17826-17836
    • (1990) J. Biol. Chem. , vol.265 , pp. 17826-17836
    • Shuman, S.1    Prescott, J.2
  • 29
    • 0028091124 scopus 로고
    • Vaccinia DNA topoisomerase I: single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions
    • Stivers J.T., Shuman S., and Mildvan A.S. Vaccinia DNA topoisomerase I: single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions. Biochemistry 33 (1994) 327-339
    • (1994) Biochemistry , vol.33 , pp. 327-339
    • Stivers, J.T.1    Shuman, S.2    Mildvan, A.S.3
  • 30
    • 0028605201 scopus 로고
    • Vaccinia DNA topoisomerase: kinetic evidence for general acid-base catalysis and a conformational step
    • Stivers J.T., Shuman S., and Mildvan A.S. Vaccinia DNA topoisomerase: kinetic evidence for general acid-base catalysis and a conformational step. Biochemistry 33 (1994) 15449-15458
    • (1994) Biochemistry , vol.33 , pp. 15449-15458
    • Stivers, J.T.1    Shuman, S.2    Mildvan, A.S.3
  • 31
    • 4644251969 scopus 로고    scopus 로고
    • Individual nucleotide bases, not base pairs, are critical for triggering site-specific DNA cleavage by vaccinia topoisomerase
    • Tian L., Sayer J.M., Jerina D.M., and Shuman S. Individual nucleotide bases, not base pairs, are critical for triggering site-specific DNA cleavage by vaccinia topoisomerase. J. Biol. Chem. 279 38 (2004) 39718-39726
    • (2004) J. Biol. Chem. , vol.279 , Issue.38 , pp. 39718-39726
    • Tian, L.1    Sayer, J.M.2    Jerina, D.M.3    Shuman, S.4
  • 32
    • 0038128634 scopus 로고    scopus 로고
    • Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome
    • Upton C., Slack S., Hunter A.L., Ehlers A., and Roper R.L. Poxvirus orthologous clusters: toward defining the minimum essential poxvirus genome. J. Virol. 77 13 (2003) 7590-7600
    • (2003) J. Virol. , vol.77 , Issue.13 , pp. 7590-7600
    • Upton, C.1    Slack, S.2    Hunter, A.L.3    Ehlers, A.4    Roper, R.L.5
  • 33
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Annual Reviews, Inc., New York
    • Wang J.C. DNA topoisomerases. Annu. Rev. Biochem. vol. 65 (1996), Annual Reviews, Inc., New York 635-692
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 34
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: a molecular perspective
    • Wang J.C. Cellular roles of DNA topoisomerases: a molecular perspective. Nat. Rev., Mol. Cell Biol. 3 6 (2002) 430-440
    • (2002) Nat. Rev., Mol. Cell Biol. , vol.3 , Issue.6 , pp. 430-440
    • Wang, J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.