Sequence variation in the gene encoding the 10-kDa prolamin in Oryza (Poaceae). I. Phylogenetic implications

Theoretical and Applied Genetics

Volumn 105, Issue 6-7, 2002, Pages 841-846

  Mullins, I M ^a   Hilu, K W ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

Genomes; Oryza; Phylogeny; Poaceae; Prolamin

Indexed keywords

FORESTRY; GENES; POLYPEPTIDES; PROTEINS;

GENE ENCODING;

GENETIC ENGINEERING;

EMBRYOPHYTA; EUKARYOTA; ORYZA; ORYZA AUSTRALIENSIS; ORYZA BRACHYANTHA; ORYZA GRANULATA; ORYZA MEYERIANA; ORYZA PUNCTATA; POACEAE;

EID: 0036944979     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-1056-4     Document Type: Article

References (31)

1. Aggarwal K, Brar D, Khush G (1997) Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using genomic DNA hybridization. Mol Gen Genet 254:1-12
2. Barbier P, Ishihama A (1990) Variation in the nucleotide sequence of a prolamin gene family in wild rice. Plant Mol Biol 15: 191-195
3. Bremmer K (1988) The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803
4. Dally AM, Second G (1990) Chloroplast DNA diversity in wild and cultivated species of rice (genus Oryza, section Oryza). Cladistic mutation and genetic distance analysis. Theor Appl Genet 80:209-222
5. Donoghue MJ, Olmstead RG, Smith JF, Palmer JD (1992) Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann Missouri Bot Gard 79:333-345
6. Eriksson T (1998) AutoDecay Ver. 4.0 (program distributed by the author). Department of Botany, Stockholm University, Stockholm
7. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the boostrap. Evolution 39:783-791
8. Ge S, Sang T, Lu B-R, Hong D-Y (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc Natl Acad Sci USA 96:14, 1-14, 1
9. Hillis DM, Huelsenbeck JP (1992) Signal, noise, and reliability in molecular phylogenetic analyses. J Hered 83:189-195
10. Hilu KW (1994) Evidence from RAPD markers in the evolution of Echinochloa millets (Poaceae). Plant Syst Evol 189:247-257
11. Hilu KW (2000) Contributions of prolamin size diversity and structure to the sytematics of the Poaceae. In: Jacobs SWL, Everett J (eds) Grass Systematics and Evolution 2. CSIRO Press, Melbourne, pp 241-247
12. Hilu KW, Sharova LV (1998) Characterization of 10-kDa prolamin genes in Phyllostachys aurea (Bambusoideae, Poaceae). Am J Bot 85:1033-1037
13. Hilu KW, Sharova LV (2002) Evolutionary implications of substitution patterns in prolamin genes of Oryza glaberrima (African rice, Poaceae) and related species. Am J Bot (in press)
14. Hilu KW, Alice LA, Liang H (1999) Phylogeny of Poaceae inferred from matk sequences. Ann Missouri Bot Gard 86: 835-851
15. Jena KK, Kochert G (1991) Restriction length polymorphism analysis of CCDD genome species of the genus Oryza L. Plant Mol Biol 5:109-118
16. Kim WT, Okita TW (1988) Structure, expression, and heterogeneity of the rice seed prolamines. Plant Physiol 88:649-655
17. Li WH, Graur D (1992) Fundamentals of Molecular Evolution. Sinauer, Sunderland, Massachusetts
18. Lu BS (1999) Taxonomy of the genus Oryza (Poaceae): Historical perspective and current status. Int Rice Res Notes (IRRI) 24, 2:4-8
19. Masumura T, Shibata D, Hibino T, Kato T, Kawabe K, Takeba G, Tabaka K, Fuji S (1989) cDNA cloning of an mRNA encoding a sulfur-rich 10-kDa prolamin polypeptide in rice seeds. Plant Mol Biol 12:123-130
20. McIntyre CL, Winberg B, Houchins K, Appels R, Baum BR (1992) Relationships between Oryza species (Poaceae) based on 5S DNA sequences. Plant Syst Evol 183:249-264
21. Morishima H, Oka HI (1960) The pattern of interspecific variation in the genus Oryza: Its quantitative representation by statistical methods. Evolution 14:13-165
22. Oka HI (1988) Origin of Culitvated Rice. Japanese Science Society Press, Tokyo
23. Roschevicz RJ (1931) A contribution to the knowledge of rice. Bull Bot Genet Plant Breed 27:3-133
24. Sanderson MJ, Donoghue MJ (1989) Patterns of variation in levels of homoplasy. Evolution 8:1781-1795
25. Second G (1985) Evolutionary relationships in the Sativa group of Oryza based on isozyme data. Génét Sél. Evol 17:89-114
26. Sharma SD, Shastry SVS (1965) Taxonomic studies in genus Oryza L. III. O. rufipogon Giff. sensu stricto and O. nivara Sharma et Shastry nom. Nov. Ind J Genet Plant Breed 25:157-167
27. Shewry PR, Napier JA, Tatham AS (1995) Seed storage proteins: Structures and biosynthesis. Plant Cell 7:945-956
28. Swofford DL (1998) PAUP: Phylogenetic Analysis Using Parsimony. Version 4.0b2a Sinaur Assoc. Sunderland, Massachusetts
29. Vaughan D (1994) The Wild Relatives of Rice: A Genetic Resources Handbook. International Rice Research Institute, Los Baños, The Philippines, pp 1-101
30. Wang Y, Second G, Tanksley SD (1992) Polymorphism and phylogenetic relationships among species of the genus Oryza as determined by analysis of nuclear RFLPs. Theor Appl Genet 83:565-581
31. World Almanac and Book of Facts (1998) Current Population and Projections for All Countries: 1997, 2020 and 2050