-
1
-
-
23244435214
-
Computing regularization paths for learning multiple kernels
-
Saul, L. K. et al, eds, Cambridge, MA, MIT Press
-
Bach, F. R. et al. (2004). Computing regularization paths for learning multiple kernels. In Saul, L. K. et al. (eds) Advances in Neural Information Processing Systems, Cambridge, MA, MIT Press.
-
(2004)
Advances in Neural Information Processing Systems
-
-
Bach, F.R.1
-
2
-
-
33745771638
-
Protein function prediction via graph kernels
-
Borgwardt, K.M. et al. (2005) Protein function prediction via graph kernels. Bioinformatics, 21(Suppl. 1), i47-i56.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Borgwardt, K.M.1
-
3
-
-
0026966646
-
A training algorithm for optimal margin classifiers
-
Haussler, D, ed, Pittsburgh, PA, ACM Press, pp
-
Boser, B. E. et al. (1992) A training algorithm for optimal margin classifiers. In Haussler, D. (ed.), 5th Annual ACM Workshop on COLT Pittsburgh, PA, ACM Press, pp. 144-152.
-
(1992)
5th Annual ACM Workshop on COLT
, pp. 144-152
-
-
Boser, B.E.1
-
4
-
-
0033977581
-
The ASTRAL compendium for sequence and structure analysis
-
Brenner, S. E. et al. (2000) The ASTRAL compendium for sequence and structure analysis. Nucleic Acids Research, 28, 254-256.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 254-256
-
-
Brenner, S.E.1
-
5
-
-
9644283060
-
Predicting enzyme class from protein structure without alignments
-
Dobson, P. D. and Doig, A. J. (2005) Predicting enzyme class from protein structure without alignments. J. Mol. Biol., 345, 187-199.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 187-199
-
-
Dobson, P.D.1
Doig, A.J.2
-
6
-
-
0029619259
-
Stride: Knowledge-based protein secondary structure assignment
-
Frishman, D. and Argos, P. (1995) Stride: Knowledge-based protein secondary structure assignment. Proteins: Struct. Funct. Genet., 23, 566-579.
-
(1995)
Proteins: Struct. Funct. Genet
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
7
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Gene Ontology Consortium
-
Gene Ontology Consortium. (2000) Gene ontology: Tool for the unification of biology. Nat. Genet., 25, 25-9.
-
(2000)
Nat. Genet
, vol.25
, pp. 25-29
-
-
-
8
-
-
0033597176
-
The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
-
Hegyi, H. and Gerstein, M. (1999) The relationship between protein structure and function: A comprehensive survey with application to the yeast genome. J. Mol. Biol., 288, 147-164.
-
(1999)
J. Mol. Biol
, vol.288
, pp. 147-164
-
-
Hegyi, H.1
Gerstein, M.2
-
9
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
10
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
Hopp, T. P. and Woods, K. R. (1981) Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. USA, 78, 3824-3828.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
12
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J. and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
-
(1982)
J. Mol. Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
13
-
-
8844263749
-
A statistical framework for genomic data fusion
-
Lanckriet, G. R. G. et al. (2004) A statistical framework for genomic data fusion. Bioinformatics, 20, 2626-2635.
-
(2004)
Bioinformatics
, vol.20
, pp. 2626-2635
-
-
Lanckriet, G.R.G.1
-
14
-
-
0036358995
-
The spectrum kernel: A string kernel for SVM protein classification
-
Altman, R. B. et al, eds, New Jersey, World Scientific
-
Leslie, C. et al. (2002) The spectrum kernel: A string kernel for SVM protein classification. In Altman, R. B. et al. (eds) Proceedings of the Pacific Symposium on Biocomputing, pp. 564-575, New Jersey, World Scientific.
-
(2002)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 564-575
-
-
Leslie, C.1
-
15
-
-
84898968688
-
-
Leslie, C. et al. (2003) Mismatch string kernels for SVM protein classification. In Becker, S. et al. Advances in Neural Information Processing Systems, Cambridge, MA, MIT Press, pp. 1441-1448.
-
Leslie, C. et al. (2003) Mismatch string kernels for SVM protein classification. In Becker, S. et al. Advances in Neural Information Processing Systems, Cambridge, MA, MIT Press, pp. 1441-1448.
-
-
-
-
16
-
-
0035072551
-
Clustering of highly homologous sequences to reduce the size of large protein databases
-
Li, W. et al. (2001). Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics, 17 282-283.
-
(2001)
Bioinformatics
, vol.17
, pp. 282-283
-
-
Li, W.1
-
17
-
-
0036376041
-
Combining pairwise sequence similarity and support vector machines for remote protein homology detection
-
Washington, DC, April 18-21, pp
-
Liao, L. and Noble W. S. (2002) Combining pairwise sequence similarity and support vector machines for remote protein homology detection. In Proceedings of the Sixth Annual International Conference on Computational Molecular Biology, Washington, DC, April 18-21, pp. 225-232.
-
(2002)
Proceedings of the Sixth Annual International Conference on Computational Molecular Biology
, pp. 225-232
-
-
Liao, L.1
Noble, W.S.2
-
18
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. G. et al. (1995). SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
-
19
-
-
1542559402
-
Support vector machine applications in computational biology
-
Schoelkopf, B. et al, eds, Cambridge, MA, MIT Press, pp
-
Noble, W. S. (2004) Support vector machine applications in computational biology. In Schoelkopf, B. et al. (eds) Kernel Methods in Computational Biology, Cambridge, MA, MIT Press, pp. 71-92.
-
(2004)
Kernel Methods in Computational Biology
, pp. 71-92
-
-
Noble, W.S.1
-
20
-
-
0036205337
-
The CATH protein family database: A resource for structural and functional annotation of genomes
-
Orengo, C. A. et al. (2002) The CATH protein family database: A resource for structural and functional annotation of genomes. Proteomics, 2, 11-21.
-
(2002)
Proteomics
, vol.2
, pp. 11-21
-
-
Orengo, C.A.1
-
21
-
-
0036839162
-
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
-
Ortiz, A. R. et al. (2002) MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison. Protein Sci., 11, 2606-2621.
-
(2002)
Protein Sci
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
-
22
-
-
0037314097
-
Matrix2png: A utility for visualizing matrix data
-
Pavlidis, P. and Noble, W. S. (2003) Matrix2png: A utility for visualizing matrix data. Bioinformatics, 19(2), 295-296.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 295-296
-
-
Pavlidis, P.1
Noble, W.S.2
-
23
-
-
13944252921
-
Assigning new GO annotations to Protein Data Bank sequences by combining structure and sequence homology
-
Ponomarenko, J. V. et al. (2005) Assigning new GO annotations to Protein Data Bank sequences by combining structure and sequence homology. Proteins: Structure, Function and Bioinformatics, 58 855-865.
-
(2005)
Proteins: Structure, Function and Bioinformatics
, vol.58
, pp. 855-865
-
-
Ponomarenko, J.V.1
-
24
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner, M. F. et al. (1996) Reduced surface: An efficient way to compute molecular surfaces. Biopolymers, 38, 305-320.
-
(1996)
Biopolymers
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
-
26
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (ce) of the optimal path
-
Shindyalov, I. N. and Bourne, P. E. (1998) Protein structure alignment by incremental combinatorial extension (ce) of the optimal path. Protein Eng., 11, 739-747.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
27
-
-
0142032204
-
Support vector classification with asymmetric kernel function
-
Verleysen, M, ed
-
Tsuda, K. (1999) Support vector classification with asymmetric kernel function. In Verleysen, M. (ed.) Proceedings ESANN, pp. 183-188.
-
(1999)
Proceedings ESANN
, pp. 183-188
-
-
Tsuda, K.1
-
28
-
-
0032917069
-
Protein structural topology: Automated analysis, diagrammatic representation and database searching
-
Westhead, D.R. et al. (1999) Protein structural topology: automated analysis, diagrammatic representation and database searching. Protein Sci., 8, 897-904.
-
(1999)
Protein Sci
, vol.8
, pp. 897-904
-
-
Westhead, D.R.1
|