메뉴 건너뛰기




Volumn 8, Issue 4, 1999, Pages 897-904

Protein structural topology: Automated analysis and diagrammatic representation

Author keywords

Protein structure; Topological diagram; Topological representation; Topology; TOPS

Indexed keywords

ALGORITHM; ART; ARTICLE; CHIRALITY; COMPUTER ANALYSIS; CRYSTAL STRUCTURE; DATA BASE; NONBIOLOGICAL MODEL; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE;

EID: 0032917069     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.8.4.897     Document Type: Article
Times cited : (109)

References (30)
  • 2
    • 0028077637 scopus 로고
    • Refined structure of dimeric diphtheria toxin at 2.0 Å resolution
    • Bennett MJ, Choe S, Eisenberg D. 1994. Refined structure of dimeric diphtheria toxin at 2.0 Å resolution. Protein Sci 3:1444-1463.
    • (1994) Protein Sci , vol.3 , pp. 1444-1463
    • Bennett, M.J.1    Choe, S.2    Eisenberg, D.3
  • 4
    • 0028871609 scopus 로고
    • X-ray structure and catalytic mechanism of lobster enolase
    • Duquerroy S, Camus C, Janin J. 1995. X-ray structure and catalytic mechanism of lobster enolase. Biochemistry 34:12513-12523.
    • (1995) Biochemistry , vol.34 , pp. 12513-12523
    • Duquerroy, S.1    Camus, C.2    Janin, J.3
  • 5
    • 0024357657 scopus 로고
    • The structure of tumor necrosis factor-alpha at 2.6 Å resolution. Implications for receptor binding
    • Eck MJ, Sprang SR. 1989. The structure of tumor necrosis factor-alpha at 2.6 Å resolution. Implications for receptor binding. J Biol Chem 264:17595-17605
    • (1989) J Biol Chem , vol.264 , pp. 17595-17605
    • Eck, M.J.1    Sprang, S.R.2
  • 6
    • 0028181017 scopus 로고
    • An algorithm for automatically generating protein topology cartoons
    • Flores TP, Moss DS, Thornton JM. 1994. An algorithm for automatically generating protein topology cartoons. Protein Eng 7:31-37.
    • (1994) Protein Eng , vol.7 , pp. 31-37
    • Flores, T.P.1    Moss, D.S.2    Thornton, J.M.3
  • 7
    • 0028175519 scopus 로고
    • β Sheet topology: A new system of nomenclature
    • Flower DR. 1994a. β Sheet topology: A new system of nomenclature. FEBS Lett 344:247-250.
    • (1994) FEBS Lett , vol.344 , pp. 247-250
    • Flower, D.R.1
  • 8
    • 0027946925 scopus 로고
    • Automating the analysis and identification of protein beta barrels
    • Flower DR. 1994b. Automating the analysis and identification of protein beta barrels. Protein Eng 7:1305-1310.
    • (1994) Protein Eng , vol.7 , pp. 1305-1310
    • Flower, D.R.1
  • 9
    • 0029619259 scopus 로고
    • Knowledge based protein secondary structure assignment
    • Frishman D, Argos P. 1995. Knowledge based protein secondary structure assignment. Proteins 23:566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 11
    • 0028578645 scopus 로고
    • Interhelical contacts determining the architecture of alpha helical proteins
    • Grigoriev IV, Mironov AA, Rakhmaninova AB. 1994. Interhelical contacts determining the architecture of alpha helical proteins. J Biolmol Struct Dyn 12:559-572.
    • (1994) J Biolmol Struct Dyn , vol.12 , pp. 559-572
    • Grigoriev, I.V.1    Mironov, A.A.2    Rakhmaninova, A.B.3
  • 12
    • 0021724242 scopus 로고
    • Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5 Å resolution
    • Jones TA, Liljas L. 1984. Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5 Å resolution. J Mol Biol 177:735-767.
    • (1984) J Mol Biol , vol.177 , pp. 735-767
    • Jones, T.A.1    Liljas, L.2
  • 13
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
    • Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features. Biopolymers 22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 15
    • 0027552820 scopus 로고
    • The three-dimensional structure of canavalin from jack bean (canavalia ensiformis)
    • Ko T-P, Ng JD, Day J, Greenwood A, MacPherson A. 1993. The three-dimensional structure of canavalin from jack bean (canavalia ensiformis). Plant Physiol 101:729-744.
    • (1993) Plant Physiol , vol.101 , pp. 729-744
    • Ko, T.-P.1    Ng, J.D.2    Day, J.3    Greenwood, A.4    MacPherson, A.5
  • 16
    • 0026686241 scopus 로고
    • Analysis of protein sheet topologies by graph theoretical methods
    • Koch I, Kaden F, Selbig J. 1992. Analysis of protein sheet topologies by graph theoretical methods. Proteins 12:314-323.
    • (1992) Proteins , vol.12 , pp. 314-323
    • Koch, I.1    Kaden, F.2    Selbig, J.3
  • 17
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis PJ. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J Appl Cryst 24:946-950.
    • (1991) J Appl Cryst , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 18
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt M, Chothia C. 1976. Structural patterns in globular proteins. Nature 261:552-557.
    • (1976) Nature , vol.261 , pp. 552-557
    • Levitt, M.1    Chothia, C.2
  • 19
    • 0026050639 scopus 로고
    • Crystal structure of insecticidal delta-endotoxin from Bacillus thuringiensis at 2.5 Å resolution
    • Li JD, Carroll J, Ellar DJ. 1991. Crystal structure of insecticidal delta-endotoxin from Bacillus thuringiensis at 2.5 Å resolution. Nature 353:815-821.
    • (1991) Nature , vol.353 , pp. 815-821
    • Li, J.D.1    Carroll, J.2    Ellar, D.J.3
  • 21
    • 0017615801 scopus 로고
    • Logical analysis of the mechanism of protein folding IV: Super-secondary structures
    • Nagano K. 1977. Logical analysis of the mechanism of protein folding IV: Super-secondary structures. J Mol Biol 109:235-250.
    • (1977) J Mol Biol , vol.109 , pp. 235-250
    • Nagano, K.1
  • 23
    • 0018177366 scopus 로고
    • Structure of bovine liver rhodanese I. Structure determination at 2.5 Å resolution and a comparison of the conformation and sequence of its two domains
    • Ploegman JH, Drent G, Kalk KH, Hol WG. 1978. Structure of bovine liver rhodanese I. Structure determination at 2.5 Å resolution and a comparison of the conformation and sequence of its two domains. J Mol Biol 123:557-594.
    • (1978) J Mol Biol , vol.123 , pp. 557-594
    • Ploegman, J.H.1    Drent, G.2    Kalk, K.H.3    Hol, W.G.4
  • 24
    • 0017387723 scopus 로고
    • β-Sheet topology and the relatedness of proteins
    • Richardson JS. 1977. β-Sheet topology and the relatedness of proteins. Nature 268:495-500.
    • (1977) Nature , vol.268 , pp. 495-500
    • Richardson, J.S.1
  • 25
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson JS. 1981. The anatomy and taxonomy of protein structure. Ad Protein Chem 34:167-339.
    • (1981) Ad Protein Chem , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 27
    • 0345320624 scopus 로고    scopus 로고
    • [PhD Thesis]. London, UK: University of London
    • Slidel TWF. 1997. [PhD Thesis]. London, UK: University of London.
    • (1997)
    • Slidel, T.W.F.1
  • 28
    • 0017610611 scopus 로고
    • On the conformations of proteins: The handedness of the connection between parallel β-strands
    • Sternberg MJE, Thornton JM. 1977. On the conformations of proteins: The handedness of the connection between parallel β-strands. J Mol Biol 110:269-283.
    • (1977) J Mol Biol , vol.110 , pp. 269-283
    • Sternberg, M.J.E.1    Thornton, J.M.2
  • 30
    • 0031940246 scopus 로고    scopus 로고
    • An atlas of protein topology cartoons available over the world wide web
    • Westhead DR, Hatton DC, Thornton JM. 1998. An atlas of protein topology cartoons available over the world wide web. Trends Biochem Sci 23:35-36.
    • (1998) Trends Biochem Sci , vol.23 , pp. 35-36
    • Westhead, D.R.1    Hatton, D.C.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.