Oxygen-evolving extrinsic proteins (PsbO,P,Q,R): Bioinformatic and functional analysis

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1767, Issue 6, 2007, Pages 575-582

  De Las Rivas, Javier ^a   Heredia, Pedro ^a   Roman, Angel ^a  

^a Salamanca Spain   (Spain)

Author keywords

Bioinformatics; Oxygen evolving complex; Photosystem II complex; Protein evolution; Protein structure; PsbO; PsbP; PsbQ; PsbR

Indexed keywords

MANGANESE; OXYGEN EVOLVING EXTRINSIC PROTEIN; POLYPEPTIDE; PROTEIN PSBP; PROTEIN PSBQ; UNCLASSIFIED DRUG;

ARTICLE; BIOINFORMATICS; CATALYSIS; CYANOBACTERIUM; EUKARYOTE; FUNCTIONAL ASSESSMENT; GREEN ALGA; IN VIVO STUDY; PHOTOSYNTHESIS; PLANT; PRIORITY JOURNAL; PROKARYOTE; PROTEIN ANALYSIS; PROTEIN STABILITY; REACTION ANALYSIS; SPINACH; WATER ANALYSIS;

ALGAL PROTEINS; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OXYGEN; PHOTOSYSTEM II PROTEIN COMPLEX; PLANT PROTEINS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID;

CHLOROPHYTA; CYANOBACTERIA; EMBRYOPHYTA; EUKARYOTA; PROKARYOTA;

EID: 34249803219     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2007.01.018     Document Type: Article

References (30)

1. Ferreira K.N., Iverson T.M., Maghlaoui K., Barber J., and Iwata S. Architecture of the photosynthetic oxygen-evolving center. Science 303 (2004) 1831-1838
2. Loll B., Kern J., Saenger W., Zouni A., and Biesiadka J. Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II. Nature 438 (2005) 1040-1044
3. Nield J., and Barber J. Refinement of the structural model for the Photosystem II supercomplex of higher plants. Biochim. Biophys. Acta 1757 (2006) 353-361
4. Heredia P., and De Las Rivas J. Fluorescence induction of Photosystem II membranes shows the steps till reduction and protonation of the quinone pool. J. Plant Physiol. 160 (2003) 1499-1506
5. Heredia P., and De Las Rivas J. Calcium-dependent conformational change and thermal stability of the isolated PsbO protein detected by fTIR spectroscopy. Biochemistry 42 (2003) 11831-11838
6. Balsera M., Arellano J.B., Pazos F., Devos D., Valencia A., and De Las Rivas J. The single tryptophan of the PsbQ protein of photosystem II is at the end of a 4-alpha-helical bundle domain. Eur. J. Biochem. 270 (2003) 3916-3927
7. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
8. Karplus K., Barrett C., and Hughey R. Hidden Markov models for detecting remote protein homologies. Bioinformatics 14 (1998) 846-856
9. Higgins D.G., Thompson J.D., and Gibson T.J. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266 (1996) 383-402
10. Notredame C., Higgins D.G., and Heringa J. T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302 (2000) 205-217
11. Guex N., and Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18 (1997) 2714-2723
12. Andreeva A., Howorth D., Brenner S.E., Hubbard T.J., Chothia C., and Murzin A.G. SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res. 32 (2004) D226-D229
13. De Las Rivas J., Balsera M., and Barber J. Evolution of oxygenic photosynthesis: genome-wide analysis of the OEC extrinsic proteins. Trends Plant Sci. 9 (2004) 18-25
14. De Las Rivas J., and Roman A. Structure and evolution of the extrinsic proteins that stabilize the oxygen-evolving engine. Photochem. Photobiol. Sci. 4 (2005) 1003-1010
15. Ifuku K., Nakatsu T., Kato H., and Sato F. Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum. EMBO Rep. 5 (2004) 362-367
16. Balsera M., Arellano J.B., Revuelta J.L., De Las Rivas J., and Hermoso J.A. The 1.49 A resolution crystal structure of PsbQ from photosystem II of Spinacia oleracea reveals a PPII structure in the N-terminal region. J. Mol. Biol. 350 (2005) 1051-1060
17. Calderone V., Trabucco M., Vujicic A., Battistutta R., Giacometti G.M., Andreucci F., Barbato R., and Zanotti G. Crystal structure of the PsbQ protein of photosystem II from higher plants. EMBO Rep. 4 (2003) 900-905
18. De Las Rivas J., and Barber J. Analysis of the structure of the PsbO protein and its implications. Photosynth. Res. 81 (2004) 329-443
19. Ifuku K., Yamamoto Y., Ono T.A., Ishihara S., and Sato F. PsbP protein, but not PsbQ protein, is essential for the regulation and stabilization of photosystem II in higher plants. Plant Physiol. 139 (2005) 1175-1184
20. Yi X., Hargett S.R., Frankel L.K., and Bricker T.M. The PsbQ protein is required in Arabidopsis for photosystem II assembly/stability and photoautotrophy under low light conditions. J. Biol. Chem. 281 (2006) 26260-26267
21. Seidler A. The extrinsic polypeptides of Photosystem II. Biochim. Biophys. Acta 1277 (1996) 35-60
22. Bondarava N., Beyer P., and Krieger-Liszkay A. Function of the 23 kDa extrinsic protein of Photosystem II as a manganese binding protein and its role in photoactivation. Biochim. Biophys. Acta 1708 (2005) 63-70
23. Suorsa M., Sirpio S., Allahverdiyeva Y., Paakkarinen V., Mamedov F., Styring S., and Aro E.M. PsbR, a missing link in the assembly of the oxygen-evolving complex of plant photosystem II. J. Biol. Chem. 281 (2006) 145-150
24. Suzuki T., Ohta H., and Enami I. Cross-reconstitution of the extrinsic proteins and photosystem II complexes from Chlamydomonas reinhardtii and Spinacia oleracea. Photosynth. Res. 84 (2005) 239-244
25. Spetea C., Hundal T., Lundin B., Heddad M., Adamska I., and Andersson B. Multiple evidence for nucleotide metabolism in the chloroplast thylakoid lumen. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 1409-1414
26. Tohri A., Dohmae N., Suzuki T., Ohta H., Inoue Y., and Enami I. Identification of domains on the extrinsic 23 kDa protein possibly involved in electrostatic interaction with the extrinsic 33 kDa protein in spinach photosystem II. Eur. J. Biochem. 271 (2004) 962-971
27. Meades Jr. G.D., McLachlan A., Sallans L., Limbach P.A., Frankel L.K., and Bricker T.M. Association of the 17 kDa extrinsic protein with photosystem II in higher plants. Biochemistry 44 (2005) 15216-15221
28. Hashimoto A., Ettinger W.F., Yamamoto Y., and Theg S.M. Assembly of newly imported oxygen-evolving complex subunits in isolated chloroplasts: sites of assembly and mechanism of binding. Plant Cell 9 (1997) 441-452
29. Chow W.S., Kim E.H., Horton P., and Anderson J.M. Granal stacking of thylakoid membranes in higher plant chloroplasts: the physicochemical forces at work and the functional consequences that ensue. Photochem. Photobiol. Sci. 4 (2005) 1081-1090
30. Shutova T., Nikitina J., Deikus G., Andersson B., and Klimov V. Structural dynamics of the manganese-stabilizing protein effect of pH, calcium, and manganese. Biochemistry 44 (2005) 15182-15192