Crystal structure of the PsbP protein of photosystem II from Nicotiana tabacum

EMBO Reports

Volumn 5, Issue 4, 2004, Pages 362-367

  Ifuku, Kentaro ^a,b   Nakatsu, Toru ^a,b   Kato, Hiroaki ^a,b   Sato, Fumihiko ^a  

^a KYOTO UNIVERSITY   (Japan)

^b RIKEN HARIMA INSTITUTE   (Japan)

Author keywords

Crystal structure; Extrinsic protein; Molecular evolution; Photosystem II; PsbP

Indexed keywords

GUANOSINE TRIPHOSPHATASE; MEMBRANE PROTEIN; PROTEIN SUBUNIT; PSBP PROTEIN; RAN PROTEIN; REGULATOR PROTEIN; UNCLASSIFIED DRUG;

ALGORITHM; ARTICLE; BETA SHEET; CRYSTAL STRUCTURE; CYANOBACTERIUM; ELECTRICITY; GREEN ALGA; INTRACELLULAR TRANSPORT; METABOLIC REGULATION; MOLECULAR EVOLUTION; NONHUMAN; PHOTOSYSTEM II; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEIN TRANSPORT; SEQUENCE HOMOLOGY; TOBACCO;

AMINO ACID SEQUENCE; CRYSTALLOGRAPHY, X-RAY; CYANOBACTERIA; ELECTROSTATICS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PHOTOSYSTEM II PROTEIN COMPLEX; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RAN GTP-BINDING PROTEIN; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; TOBACCO;

ALGAE; CHLOROPHYTA; CYANOBACTERIA; EMBRYOPHYTA; NICOTIANA; NICOTIANA TABACUM;

EID: 2442543556     PISSN: 1469221X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.embor.7400113     Document Type: Article

References (45)

1. Åkerlund H-E, Andersson B, Persson A, Albertson P-A (1979) Isoelectric points of spinach thylakoid membrane surfaces as determined by cross partition. Biochim Biophys Acta 552: 238-246
2. Baker RP, Harreman MT, Eccleston JF, Corbett AH, Stewart M (2001) Interaction between Ran and Mog1 is required for efficient nuclear protein import. J Biol Chem 276: 41255-41262
3. 559 mediates the oxidation of reduced plastoquinone in the dark. J Biol Chem 278: 13554-13560
4. Calderone V et al (2003) Crystal structure of the PsbQ protein of photosystem II from higher plants. EMBO Rep 4: 900-905
5. de Vitry C, Olive J, Drapier D, Recouvreur M, Wollman FA (1989) Post-translational events leading to the assembly of photosystem II protein complex: a study using photosynthesis mutants from Chlamydomonas reinhardtii. J Cell Biol 109: 991-1006
6. Enami I, Yoshihara S, Tohri A, Okumura A, Ohta H, Shen J-R (2000) Cross-reconstitution of various extrinsic proteins and photosystem II complexes from cyanobacteria, red algae and higher plants, Plant Cell Physiol 41: 1354-1364
7. 549 from Synechocystis sp. PCC 6803 at 1.21 Å resolution. J Biol Inorg Chem 6: 324-332
8. Ghanotakis DF, Yocum CF (1985) Polypeptides of photosystem II and their role in oxygen evolution. Photosynth Res 7: 97-114
9. Hankamer B, Morris E, Nield J, Gerle C, Barber J (2001) Three-dimensional structure of the photosystem II core dimer of higher plants determined by electron microscopy. J Struct Biol 135: 262-269
10. Ifuku K, Sato F (2001) Importance of the N-terminal sequence of the extrinsic 23 kDa polypeptide in photosystem II in ion-retention in oxygen-evolution. Biochim Biophys Acta 1546: 196-204
11. 2+ retention in photosystem II. Plant Cell Physiol 43: 1244-1249
12. Ifuku K, Nakatsu T, Kato H, Sato F (2003) Crystallization and preliminary crystallographic studies on the extrinsic 23 kDa protein in the oxygen-evolving complex of photosystem II. Acta Crystallogr D 59: 1462-1463
13. Kamiya N, Shen J-R (2003) Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-Å resolution. Proc Natl Acad Sci USA 100: 98-103
14. Kerfeld et al (2003) Structural and EPR characterization of the soluble form of cytochrome c-550 of the psbV2 gene product from cyanobacterium Thermosynechococcus elongatus. Plant Cell Physiol 44: 697-706
15. Kuwabara T, Suzuki K (1995) Reversible changes in conformation of the 23-kDa protein of photosystem II and their relationship to the susceptibility of the protein to a proteinase from photosystem II membranes. Plant Cell Physiol 36: 495-504
16. Miyao M, Murata N (1989) The mode of binding of three extrinsic proteins of 33 kDa, 23 kDa, and 18 kDa in Photosystem II complex of spinach. Biochim Biophys Acta 977: 315-321
17. Miyao M, Fujimura Y, Murata N (1988) Partial degradation of the 23-kDa protein of the Photosystem II complex of spinach. Biochim Biophys Acta 936: 465-474
18. Murata N, Miyao M (1985) Extrinsic membrane proteins in the photosynthetic oxygen-evolving complex. Trends Biochem Sci 10: 122-124
19. Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53: 240-255
20. Navaza J (1994) AMoRe: an automated package for molecular replacement. Acta Crystallogr A 50: 157-163
21. Nicholls A, Sharp KA, Honig B (1991) Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11: 281-296
22. Nield J, Orlova EV, Morris EP, Gowen B, van Heel M, Baber J (2000a) 3D map of the plant photosystem II supercomplex obtained by cryoelectron microscopy and single particle analysis. Nat Struct Biol 7: 44-47
23. Nield J, Kruse O, Ruprecht J, da Fonseca P, Buchel C, Barber J (2000b) Three-dimensional structure of Chlamydomonas reinhardtii and Synechococcus elongatus photosystem II complexes allows for comparison of their oxygen-evolving complex organization. J Biol Chem 275: 27940-27946
24. Nield J, Balsera M, Las Rivas JD, Barber J (2002) 3D cryo-EM study of the extrinsic domains of the oxygen evolving complex of spinach: assignment of the PsbO protein. J Biol Chem 277: 15006-15012
25. Ohta H et al (2003) Extrinsic proteins of photosystem II. Eur J Biochem 270: 4156-4163
26. Oki M, Nishimoto T (1998) A protein required for nuclear-protein import, Mog1p, directly interacts with GTP-Gsp1p, the Saccharomyces cerevisiae ran homologue. Proc Natl Acad Sci USA 95: 15388-15393
27. Perrakis A, Morris R, Lamzin VS (1999) Automated protein model building combined with interactive structure refinement. Nat Struct Biol 6: 458-463
28. Pflugrath JW (1999) The finer things in X-ray diffraction data collection. Acta Crystallogr D 55: 1718-1725
29. Rhee K-H, Morris EP, Baber J, Külbrandt W (1998) Three-dimensional structure of the plant photosystem II reaction centre at 8Å resolution. Nature 396: 283-286
30. Roffey RA, Theg SM (1996) Analysis of the import of carboxyl-terminal truncations of the 23-kilodalton subunit of the oxygen-evolving complex suggests that its structure is an important determinant for thylakoid transport. Plant Physiol 111: 1329-1338
31. Roussel A, Cambillau C (1996) TURBO-FRODO Manual. Marseille, France: AFMB-CNRS
32. 6 from the cyanobacterium Arthrospira maxima. Biochemistry 7: 9215-9225
33. Seidler A (1996) The extrinsic polypeptides of photosystem II. Biochim Biophys Acta 1277: 35-60
34. 550 and 12 kDa protein, in cyanobacterial photosystem II. Biochemistry 32: 1925-1932
35. 550 and 12 kDa protein with a highly purified oxygen-evolving photosystem II core complex from Synechococcus vulcanus. FEBS Lett 301: 145-149
36. Shen J-R, Qian M, Inoue Y, Burnap RL (1998) Functional characterization of Synechocystis sp. PCC 6803 delta psbU and delta psbV mutants reveals important roles of cytochrome c-550 in cyanobacterial oxygen evolution. Biochemistry 37: 1551-1558
37. Silva P et al (2003) FtsH is involved in the early stages of repair of photosystem II in Synechocystis sp. PCC 6803. Plant Cell 15: 2152-2164
38. Spetea C, Hundal T, Lohmann F, Andersson B (1999) GTP bound to chloroplast thylakoid membranes is required for light-induced, multienzyme degradation of the photosystem II D1 protein. Proc Natl Acad Sci USA 96: 6547-6552
39. Spetea C, Hundal T, Andersson B (2001) The 33 kDa subunit of photosystem II is a GTP-binding protein - presence of nucleotides in the thylakoid lumen. In PS2001 Proceedings, 12th International Congress on Photosynthesis, (Online and CD-ISBN 0643-067116), S8-005
40. Stewart M, Baker RP (2000) 1.9 Å resolution crystal structure of the Saccharomyces cerevisiae Ran-binding protein Mog1p. J Mol Biol 299: 213-223
41. Suzuki T, Minagawa J, Tomo T, Sonoike K, Ohta H, Enami I (2003) Binding and functional properties of the extrinsic proteins in oxygen-evolving photosystem II particle from a green alga, Chlamydomonas reinhardtii having his-tagged CP47. Plant Cell Physiol 44: 76-84
42. Terwilliger TC (2000) Maximum likelihood density modification. Acta Crystallogr D 56: 965-972
43. Terwilliger TC, Berendzen J (1999) Automated MAD and MIR structure solution. Acta Crystallogr D 55: 849-861
44. Yamamoto Y (1988) Organization of the oxygen-evolution enzyme complex studied by butanol/water phase partitioning of spinach photosystem II particles. J Biol Chem 263: 497-500
45. Zouni A et al (2001) Crystal structure of photosystem II from Synechococcus elongatus at 3.8 Å resolution. Nature 409: 739-743