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Volumn 359, Issue 1, 2007, Pages 83-87

siRNA selection criteria-Statistical analyses of applicability and significance

Author keywords

mRNA; mRNA secondary structure; RISC enzyme; RNAi; siRNA selection criteria; Target Patterns

Indexed keywords

RNA INDUCED SILENCING COMPLEX; SMALL INTERFERING RNA;

EID: 34249790141     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2007.05.056     Document Type: Article
Times cited : (5)

References (26)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by doublestranded RNA in Caenorhabditis elegans
    • Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., and Mello C.C. Potent and specific genetic interference by doublestranded RNA in Caenorhabditis elegans. Nature 391 (1998) 806-811
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • Zamore P.D., Tuschl T., Sharp P.A., and Bartel D.P. RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 101 (2000) 25-33
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 3
    • 0035798415 scopus 로고    scopus 로고
    • ATP requirements and small interfering RNA structure in the RNA interference pathway
    • Nykänen A., Haley B., and Zamore P.D. ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107 (2001) 309-321
    • (2001) Cell , vol.107 , pp. 309-321
    • Nykänen, A.1    Haley, B.2    Zamore, P.D.3
  • 4
    • 0035803583 scopus 로고    scopus 로고
    • Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate
    • Elbashir S.M., Martinez J., Patkaniowska A., Lendeckel W., and Tuschl T. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J. 20 (2001) 6877-6888
    • (2001) EMBO J. , vol.20 , pp. 6877-6888
    • Elbashir, S.M.1    Martinez, J.2    Patkaniowska, A.3    Lendeckel, W.4    Tuschl, T.5
  • 5
    • 0034683099 scopus 로고    scopus 로고
    • Sensitive assay of RNA interference in Drosophila and Chinese hamster cultured cells using firefly luciferase gene as target
    • Ui-Tei K., Zenno S., Miyata Y., and Saigo K. Sensitive assay of RNA interference in Drosophila and Chinese hamster cultured cells using firefly luciferase gene as target. FEBS Lett. 479 (2000) 79-82
    • (2000) FEBS Lett. , vol.479 , pp. 79-82
    • Ui-Tei, K.1    Zenno, S.2    Miyata, Y.3    Saigo, K.4
  • 6
    • 1642273831 scopus 로고    scopus 로고
    • An algorithm for selection of functional siRNA sequences
    • Amarzguioui M., and Prydz H. An algorithm for selection of functional siRNA sequences. Biochem. Biophys. Res. Commun. 316 (2004) 1050-1058
    • (2004) Biochem. Biophys. Res. Commun. , vol.316 , pp. 1050-1058
    • Amarzguioui, M.1    Prydz, H.2
  • 7
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A., Reynolds A., and Jayasena S. Functional siRNAs and miRNAs exhibit strand bias. Cell 115 (2003) 209-216
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.3
  • 8
    • 3542992506 scopus 로고    scopus 로고
    • An effective method for selecting siRNA target sequences in mammalian cells
    • Takasaki S., Kotani S., and Konagaya A. An effective method for selecting siRNA target sequences in mammalian cells. Cell Cycle 3 6 (2004) 790-795
    • (2004) Cell Cycle , vol.3 , Issue.6 , pp. 790-795
    • Takasaki, S.1    Kotani, S.2    Konagaya, A.3
  • 11
    • 33845631509 scopus 로고    scopus 로고
    • Integrated siRNA design based on surveying of features associated with high RNAi effectiveness
    • Gong W., Ren Y., Xu Q., Wang Y., Lin D., Zhou H., and Li T. Integrated siRNA design based on surveying of features associated with high RNAi effectiveness. BMC Bioinformatics 7 (2006) 516-537
    • (2006) BMC Bioinformatics , vol.7 , pp. 516-537
    • Gong, W.1    Ren, Y.2    Xu, Q.3    Wang, Y.4    Lin, D.5    Zhou, H.6    Li, T.7
  • 13
    • 33645822531 scopus 로고    scopus 로고
    • siRecords: an extensive database of mammalian siRNAs with efficacy ratings
    • Ren Y., Gong W., Xu Q., Zheng X., Lin D., Wang Y., and Li T. siRecords: an extensive database of mammalian siRNAs with efficacy ratings. Bioinformatics 22 (2006) 1027-1028
    • (2006) Bioinformatics , vol.22 , pp. 1027-1028
    • Ren, Y.1    Gong, W.2    Xu, Q.3    Zheng, X.4    Lin, D.5    Wang, Y.6    Li, T.7
  • 14
    • 22144489833 scopus 로고    scopus 로고
    • RNAi: the nuts and bolts of the RISC machine
    • Fillipowicz W. RNAi: the nuts and bolts of the RISC machine. Cell 122 (2005) 17-20
    • (2005) Cell , vol.122 , pp. 17-20
    • Fillipowicz, W.1
  • 16
    • 0035283171 scopus 로고    scopus 로고
    • Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond
    • Ding Y., and Lawrence C.E. Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond. Nucleic Acids Res. 29 (2001) 1034-1046
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1034-1046
    • Ding, Y.1    Lawrence, C.E.2
  • 17
    • 0038521255 scopus 로고    scopus 로고
    • The efficacy of small interfering RNAs targeted to the type 1 insulin-like growth factor receptor (IGF1R) is influenced by secondary structure in the IGF1R transcript
    • Bohula E.A., Salisbury A.J., Sohail M., Playford M.P., Riedemann J., Southern E.M., and Macaulay V.M. The efficacy of small interfering RNAs targeted to the type 1 insulin-like growth factor receptor (IGF1R) is influenced by secondary structure in the IGF1R transcript. J. Biol. Chem. 278 18 (2003) 15991-15997
    • (2003) J. Biol. Chem. , vol.278 , Issue.18 , pp. 15991-15997
    • Bohula, E.A.1    Salisbury, A.J.2    Sohail, M.3    Playford, M.P.4    Riedemann, J.5    Southern, E.M.6    Macaulay, V.M.7
  • 18
    • 0042161890 scopus 로고    scopus 로고
    • The activity of siRNA in mammalian cells is related to structural target accessibility: a comparison with antisense oligonucleotides
    • Kretschmer-Kazemi F.R., and Sczakiel G. The activity of siRNA in mammalian cells is related to structural target accessibility: a comparison with antisense oligonucleotides. Nucleic Acids Res. 31 15 (2003) 4417-4424
    • (2003) Nucleic Acids Res. , vol.31 , Issue.15 , pp. 4417-4424
    • Kretschmer-Kazemi, F.R.1    Sczakiel, G.2
  • 19
    • 0037089135 scopus 로고    scopus 로고
    • Positional effects of short interfering RNAs targeting the human coagulation trigger tissue factor
    • Holen T., Amarzguioui M., Wiiger M.T., Babaie E., and Prydz H. Positional effects of short interfering RNAs targeting the human coagulation trigger tissue factor. Nucleic Acids Res. 30 8 (2002) 1757-1766
    • (2002) Nucleic Acids Res. , vol.30 , Issue.8 , pp. 1757-1766
    • Holen, T.1    Amarzguioui, M.2    Wiiger, M.T.3    Babaie, E.4    Prydz, H.5
  • 21
    • 1642491747 scopus 로고    scopus 로고
    • Enhancement of RNAi activity by improved siRNA duplexes
    • Hohjoh H. Enhancement of RNAi activity by improved siRNA duplexes. FEBS Lett. 557 (2004) 193-198
    • (2004) FEBS Lett. , vol.557 , pp. 193-198
    • Hohjoh, H.1
  • 22
    • 2342564353 scopus 로고    scopus 로고
    • A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: determinants of gene silencing for use in cell-based screens
    • Hsieh A.C., Ronghai B., Manola J., Vazquez F., Bare O., Khvorova A., Scaringe S., and Sellers W.R. A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: determinants of gene silencing for use in cell-based screens. Nucleic Acids Res. 32 (2004) 893-901
    • (2004) Nucleic Acids Res. , vol.32 , pp. 893-901
    • Hsieh, A.C.1    Ronghai, B.2    Manola, J.3    Vazquez, F.4    Bare, O.5    Khvorova, A.6    Scaringe, S.7    Sellers, W.R.8
  • 24
    • 0029968822 scopus 로고    scopus 로고
    • Improved nearestneighbor parameters for predicting DNA duplex stability
    • Xia T., SantaLucia J., Allawi H.T., and Seneviratne P.A. Improved nearestneighbor parameters for predicting DNA duplex stability. Biochemistry 35 (1996) 3555-3562
    • (1996) Biochemistry , vol.35 , pp. 3555-3562
    • Xia, T.1    SantaLucia, J.2    Allawi, H.T.3    Seneviratne, P.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.