Restraint potential and free energy decomposition formalism for helical tilting

Chemical Physics Letters

Volumn 441, Issue 1-3, 2007, Pages 132-135

  Lee, Jinhyuk ^a   Im, Wonpil ^a  

^a UNIVERSITY OF KANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MEMBRANES; DECOMPOSITION; HYDROPHOBICITY; THERMODYNAMICS;

ENERGY DECOMPOSITION; INTEGRATION YIELDS; MICROSCOPIC CONTRIBUTIONS; TILT ANGLE; WEIGHTED-HISTOGRAM ANALYSIS;

FREE ENERGY;

EID: 34249737504     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cplett.2007.05.003     Document Type: Article

References (29)

1. Killian J.A. Biochim. Biophys. Acta 1376 (1998) 401
2. Strandberg E., Özdirekcan S., Rijkers D.T.S., van der Wel P.C.A., Koeppe II R.E., Liskamp R.M.J., and Killian J.A. Biophys. J. 86 (2004) 3709
3. Özdirekcan S., Rijkers D.T.S., Liskamp R.M.J., and Killian J.A. Biochemistry 44 (2005) 1004
4. van der Wel P.C.A., Strandberg E., Killian J.A., and Koeppe II R.E. Biophys. J. 83 (2002) 1479
5. Park S.H., and Opella S.J. J. Mol. Biol. 350 (2005) 310
6. Park S.H., Angelis A.A.D., Nevzorov A.A., Wu C.H., and Opella S.J. Biophys. J. 91 (2006) 3032
7. Petrache H.I., Zuckerman D.M., Sachs J.N., Killian J.A., Koeppe II R.E., and Woolf T.B. Langmuir 18 (2002) 1340
8. Kandasamy S.K., and Larson R.G. Biophys. J. 90 (2006) 2326
9. Goodyear D.J., Sharpe S., Grant C.W.M., and Morrow M.R. Biophys. J. 88 (2005) 105
10. Shen L., Bassolino D., and Stouch T. Biophys. J. 73 (1997) 3
11. Belohorcova K., Davis J.H., Woolf T.B., and Roux B. Biophys. J. 73 (1997) 3039
12. Lee J., and Im W. J. Comput. Chem. 28 (2007) 669
13. Chothia C., Levitt M., and Richardson D. J. Mol. Biol. 145 (1981) 215
14. Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., and Karplus M. J. Comput. Chem. 4 (1983) 187
15. Torrie G., and Valleau J. J. Comput. Phys. 23 (1977) 187
16. Roux B., and Karplus M. Biophys. J. 59 (1991) 961
17. Allen T.W., Andersen O.S., and Roux B. Proc. Natl. Acad. Sci. USA 101 (2004) 117
18. Henin J., Pohorille A., and Chipot C. J. Am. Chem. Soc. 127 (2005) 8478
19. Henin J., and Chipot C. J. Chem. Phys. 121 (2004) 2904
20. den Otter W.K., and Briels W.J. J. Chem. Phys. 109 (1998) 4139
21. Kuczera K. J. Comput. Chem. 17 (1996) 1726
22. Kollman P. Chem. Rev. 93 (1993) 2395
23. Gunther R., Hofmann H.-J., and Kuczera K. J. Phys. Chem. B 105 (2001) 5559
24. MacKerell Jr. A.D., et al. J. Phys. Chem. B 102 (1998) 3586
25. Killian J.A. FEBS Lett. 555 (2003) 134
26. J. Lee, W. Im, J. Am. Chem. Soc., submitted for publication.
27. Bu L., Im W., and Brooks III C.L. Biophys. J. 92 (2007) 854
28. Steinberg I.Z., and Scheraga H.A. J. Biol. Chem. 238 (1963) 172
29. Carlsson J., and Aqvist J. J. Phys. Chem. B 109 (2005) 6448