-
1
-
-
0037389971
-
Structure and function of archaeal box C/D sRNP core proteins
-
Aittaleb, M., Rashid, R., Chen, Q., Palmer, J.R., Daniels, C.J., and Li, H. 2003. Structure and function of archaeal box C/D sRNP core proteins. Nat. Struct. Biol. 10: 256-263.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 256-263
-
-
Aittaleb, M.1
Rashid, R.2
Chen, Q.3
Palmer, J.R.4
Daniels, C.J.5
Li, H.6
-
2
-
-
0036703184
-
The expanding snoRNA world
-
Bachellerie, J.P., Cavaille, J., and Huttenhofer, A. 2002. The expanding snoRNA world. Biochimie 84: 775-790.
-
(2002)
Biochimie
, vol.84
, pp. 775-790
-
-
Bachellerie, J.P.1
Cavaille, J.2
Huttenhofer, A.3
-
3
-
-
0031907732
-
In vivo identification of nuclear factors interacting with conserved elements of box C/D small nucleolar RNAs
-
Caffarelli, E., Losito, M., Giorgi, C., Fatica, A., and Bozzoni, I. 1998. In vivo identification of nuclear factors interacting with conserved elements of box C/D small nucleolar RNAs. Mol. Cell. Biol. 18: 1023-1028.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 1023-1028
-
-
Caffarelli, E.1
Losito, M.2
Giorgi, C.3
Fatica, A.4
Bozzoni, I.5
-
4
-
-
0032052773
-
SnoRNA-guided ribose methylation of rRNA: Structural features of the guide RNA duplex influencing the extent of the reaction
-
Cavaille, J. and Bachellerie, J.P. 1998. SnoRNA-guided ribose methylation of rRNA: Structural features of the guide RNA duplex influencing the extent of the reaction. Nucleic Acids Res. 26: 1576-1587.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1576-1587
-
-
Cavaille, J.1
Bachellerie, J.P.2
-
5
-
-
0029808113
-
Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
-
Cavaille, J., Nicoloso, M., and Bachellerie, J.P. 1996. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383: 732-735.
-
(1996)
Nature
, vol.383
, pp. 732-735
-
-
Cavaille, J.1
Nicoloso, M.2
Bachellerie, J.P.3
-
6
-
-
0034687740
-
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization
-
Cavaille, J., Buiting, K., Kiefmann, M., Lalande, M., Brannan, C.I., Horsthemke, B., Bachellerie, J.P., Brosius, J., and Huttenhofer, A. 2000. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Proc. Natl. Acad. Sci. 97: 14311-14316.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 14311-14316
-
-
Cavaille, J.1
Buiting, K.2
Kiefmann, M.3
Lalande, M.4
Brannan, C.I.5
Horsthemke, B.6
Bachellerie, J.P.7
Brosius, J.8
Huttenhofer, A.9
-
7
-
-
0035890644
-
Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribosemethylated nucleosides in the mature tRNATrp
-
Clouet d'Orval, B., Bortolin, M.-L., Gaspin, C., and Bachellerie, J.-P. 2001. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribosemethylated nucleosides in the mature tRNATrp. Nucleic Acids Res. 29: 4518-4529.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4518-4529
-
-
Clouet d'Orval, B.1
Bortolin, M.-L.2
Gaspin, C.3
Bachellerie, J.-P.4
-
8
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
Cordin, O., Banroques, J., Tanner, N.K., and Linder, P. 2006. The DEAD-box protein family of RNA helicases. Gene 367: 17-37.
-
(2006)
Gene
, vol.367
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
9
-
-
0037428520
-
RNA-guided nucleotide modification of ribosomal and other RNAs
-
Decatur, W. and Fournier, M.J. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278: 695-698.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 695-698
-
-
Decatur, W.1
Fournier, M.J.2
-
10
-
-
0027519760
-
Structure of a DNA:RNA hybrid duplex. Why RNase H does not cleave pure RNA
-
Fedoroff, O.Yu., Salazar, M., and Reid, B.R. 1993. Structure of a DNA:RNA hybrid duplex. Why RNase H does not cleave pure RNA. J. Mol. Biol. 233: 509-523.
-
(1993)
J. Mol. Biol
, vol.233
, pp. 509-523
-
-
Fedoroff, O.Y.1
Salazar, M.2
Reid, B.R.3
-
11
-
-
33748460634
-
Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling
-
Gagnon, K.T., Zhang, X., Agris, P.F., and Maxwell, E.S. 2006. Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling. J. Mol. Biol. 362: 1025-1042.
-
(2006)
J. Mol. Biol
, vol.362
, pp. 1025-1042
-
-
Gagnon, K.T.1
Zhang, X.2
Agris, P.F.3
Maxwell, E.S.4
-
12
-
-
0036786431
-
Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro
-
Galardi, S., Fatica, A., Bachi, A., Scaloni, A., Presutti, C., and Bozzoni, I. 2002. Purified box C/D snoRNPs are able to reproduce site-specific 2′-O-methylation of target RNA in vitro. Mol. Cell. Biol. 22: 6663-6668.
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 6663-6668
-
-
Galardi, S.1
Fatica, A.2
Bachi, A.3
Scaloni, A.4
Presutti, C.5
Bozzoni, I.6
-
13
-
-
0034615782
-
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes
-
Gaspin, C., Cavaille, J., Erauso, G., and Bachellerie, J.P. 2000. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: Lessons from the Pyrococcus genomes. J. Mol. Biol. 297: 895-906.
-
(2000)
J. Mol. Biol
, vol.297
, pp. 895-906
-
-
Gaspin, C.1
Cavaille, J.2
Erauso, G.3
Bachellerie, J.P.4
-
14
-
-
1642458421
-
The kink-turn motif in RNA is dimorphic, and metal ion-dependent
-
Goody, T., Melcher, S.E., Norman, D.G., and Lilley, D.M.J. 2004. The kink-turn motif in RNA is dimorphic, and metal ion-dependent. RNA 10: 254-264.
-
(2004)
RNA
, vol.10
, pp. 254-264
-
-
Goody, T.1
Melcher, S.E.2
Norman, D.G.3
Lilley, D.M.J.4
-
15
-
-
33750974186
-
The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity
-
Hardin, J.W. and Batey, R.T. 2006. The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity. Nuc. Acids Res. 34: 5039-5051.
-
(2006)
Nuc. Acids Res
, vol.34
, pp. 5039-5051
-
-
Hardin, J.W.1
Batey, R.T.2
-
16
-
-
0035253857
-
A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA
-
Jady, B. and Kiss, T. 2001. A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. EMBO J. 20: 541-551.
-
(2001)
EMBO J
, vol.20
, pp. 541-551
-
-
Jady, B.1
Kiss, T.2
-
17
-
-
0035898634
-
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
-
Kiss, T. 2001. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20: 3617-3622.
-
(2001)
EMBO J
, vol.20
, pp. 3617-3622
-
-
Kiss, T.1
-
18
-
-
0030604698
-
Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
-
Kiss-Laszlo, Z., Henry, Y., Bachellerie, J.P., Caizergues-Ferrer, M., and Kiss, T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85: 1077-1088.
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-Laszlo, Z.1
Henry, Y.2
Bachellerie, J.P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
19
-
-
0242614611
-
Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA
-
Kiss-Laszlo, Z., Henry, Y., and Kiss, T. 1998. Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA. EMBO J. 17: 797-807.
-
(1998)
EMBO J
, vol.17
, pp. 797-807
-
-
Kiss-Laszlo, Z.1
Henry, Y.2
Kiss, T.3
-
20
-
-
0035423087
-
The kinkturn: A new RNA secondary structure motif
-
Klein, D.J., Schmeing, T., Moore, P., and Steitz, T. 2001. The kinkturn: A new RNA secondary structure motif. EMBO J. 20: 4214-4221.
-
(2001)
EMBO J
, vol.20
, pp. 4214-4221
-
-
Klein, D.J.1
Schmeing, T.2
Moore, P.3
Steitz, T.4
-
21
-
-
0037082424
-
Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5 kD/Snu13p snoRNP core protein
-
Kuhn, J., Tran, E., and Maxwell, E.S. 2002. Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5 kD/Snu13p snoRNP core protein. Nucleic Acids Res. 30: 931-941.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 931-941
-
-
Kuhn, J.1
Tran, E.2
Maxwell, E.S.3
-
22
-
-
0038713248
-
A thermodynamic framework for the magnesium-dependent folding of RNA
-
Misra, V.K., Shiman, R., and Draper, D.E. 2003. A thermodynamic framework for the magnesium-dependent folding of RNA. Biopolymers 69: 118-136.
-
(2003)
Biopolymers
, vol.69
, pp. 118-136
-
-
Misra, V.K.1
Shiman, R.2
Draper, D.E.3
-
23
-
-
29144449192
-
The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn
-
Nolivos, S., Carpousis, A.J., and Clouet-d'Orval, B. 2005. The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn. Nucleic Acids Res. 33: 6507-6514.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6507-6514
-
-
Nolivos, S.1
Carpousis, A.J.2
Clouet-d'Orval, B.3
-
24
-
-
0034697257
-
Homologs of small nucleolar RNAs in Archaea
-
Omer, A.D., Lowe, T., Russell, A., Ebhardt, H., Eddy, S., and Dennis, P. 2000. Homologs of small nucleolar RNAs in Archaea. Science 288: 517-522.
-
(2000)
Science
, vol.288
, pp. 517-522
-
-
Omer, A.D.1
Lowe, T.2
Russell, A.3
Ebhardt, H.4
Eddy, S.5
Dennis, P.6
-
25
-
-
0037117533
-
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
-
Omer, A.D., Ziesche, S., Ebhardt, H., and Dennis, P. 2002. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl. Acad. Sci. 99: 5289-5294.
-
(2002)
Proc. Natl. Acad. Sci
, vol.99
, pp. 5289-5294
-
-
Omer, A.D.1
Ziesche, S.2
Ebhardt, H.3
Dennis, P.4
-
26
-
-
0141869105
-
Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles
-
Rashid, R., Aittaleb, M., Chen, Q., Spiegel, K., Demeler, B., and Li, H. 2003. Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles. J. Mol. Biol. 33: 295-306.
-
(2003)
J. Mol. Biol
, vol.33
, pp. 295-306
-
-
Rashid, R.1
Aittaleb, M.2
Chen, Q.3
Spiegel, K.4
Demeler, B.5
Li, H.6
-
27
-
-
9144256178
-
Sequential 2′-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA
-
Singh, S., Gurha, P., Tran, E.J., Maxwell, E.S., and Gupta, R. 2004. Sequential 2′-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA. J. Biol. Chem. 279: 47661-47671.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 47661-47671
-
-
Singh, S.1
Gurha, P.2
Tran, E.J.3
Maxwell, E.S.4
Gupta, R.5
-
28
-
-
22244460838
-
The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an inducedfit interaction with the box C/D RNAs
-
Suryadi, J., Tran, E.J., Maxwell, E.S., and Brown, B.A. 2005. The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an inducedfit interaction with the box C/D RNAs. Biochemistry 44: 9657-9672.
-
(2005)
Biochemistry
, vol.44
, pp. 9657-9672
-
-
Suryadi, J.1
Tran, E.J.2
Maxwell, E.S.3
Brown, B.A.4
-
29
-
-
0036176517
-
Small nucleolar RNAs: Versatile trans-acting molecules of ancient evolutionary origin
-
Terns, M.P. and Terns, R.M. 2002. Small nucleolar RNAs: Versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10: 17-39.
-
(2002)
Gene Expr
, vol.10
, pp. 17-39
-
-
Terns, M.P.1
Terns, R.M.2
-
30
-
-
0043026864
-
Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ sRNP core proteins
-
Tran, E.J., Zhang, X., and Maxwell, E.S. 2003. Efficient RNA 2′-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C′/D′ sRNP core proteins. EMBO J. 22: 3930-3940.
-
(2003)
EMBO J
, vol.22
, pp. 3930-3940
-
-
Tran, E.J.1
Zhang, X.2
Maxwell, E.S.3
-
31
-
-
3242771427
-
Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus?
-
Tran, E., Brown, J., and Maxwell, E.S. 2004. Evolutionary origins of the RNA-guided nucleotide-modification complexes: From the primitive translation apparatus? Trends Biochem. Sci. 29: 343-350.
-
(2004)
Trends Biochem. Sci
, vol.29
, pp. 343-350
-
-
Tran, E.1
Brown, J.2
Maxwell, E.S.3
-
32
-
-
13944251291
-
Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs
-
Tran, E.J., Zhang, X., Lackey, L., and Maxwell, E.S. 2005. Conserved spacing between the box C/D and C′/D′ RNPs of the archaeal box C/D sRNP complex is required for efficient 2′-O-methylation of target RNAs. RNA 11: 285-293.
-
(2005)
RNA
, vol.11
, pp. 285-293
-
-
Tran, E.J.1
Zhang, X.2
Lackey, L.3
Maxwell, E.S.4
-
33
-
-
22244483207
-
Induced fit of RNA on binding the L7Ae protein to the kink-turn motif
-
Turner, B., Melcher, S.E., Wilson, T.J., Norman, D.G., and Lilley, D.M. 2005. Induced fit of RNA on binding the L7Ae protein to the kink-turn motif. RNA 11: 1192-1200.
-
(2005)
RNA
, vol.11
, pp. 1192-1200
-
-
Turner, B.1
Melcher, S.E.2
Wilson, T.J.3
Norman, D.G.4
Lilley, D.M.5
-
34
-
-
0024394168
-
U3, U8, and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus
-
Tyc, K. and Steitz, J. 1989. U3, U8, and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 8: 3113-3119.
-
(1989)
EMBO J
, vol.8
, pp. 3113-3119
-
-
Tyc, K.1
Steitz, J.2
-
35
-
-
0032214692
-
Modification of U6 spliceosomal RNA is guided by other small RNAs
-
Tycowski, K., You, Z., Graham, P., and Steitz, J. 1998. Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol. Cell 2: 629-638.
-
(1998)
Mol. Cell
, vol.2
, pp. 629-638
-
-
Tycowski, K.1
You, Z.2
Graham, P.3
Steitz, J.4
-
36
-
-
0034141555
-
Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution
-
Wang, H., Boisvert, D., Kim, K.K., Kim, R., and Kim, S.H. 2000. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 Å resolution. EMBO J. 19: 317-323.
-
(2000)
EMBO J
, vol.19
, pp. 317-323
-
-
Wang, H.1
Boisvert, D.2
Kim, K.K.3
Kim, R.4
Kim, S.H.5
-
37
-
-
0029805781
-
Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D
-
Watkins, N., Leverett, R., Xia, L., Andrews, M., and Maxwell, E.S. 1996. Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D. RNA 2: 118-133.
-
(1996)
RNA
, vol.2
, pp. 118-133
-
-
Watkins, N.1
Leverett, R.2
Xia, L.3
Andrews, M.4
Maxwell, E.S.5
-
38
-
-
0034721649
-
A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP
-
Watkins, N., Segault, V., Charpentier, B., Nottrott, S., Fabrizio, P., Bachi, A., Wilm, M., Rosbash, M., Branlant, C., and Luhrmann, R. 2000. A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP. Cell 103: 457-466.
-
(2000)
Cell
, vol.103
, pp. 457-466
-
-
Watkins, N.1
Segault, V.2
Charpentier, B.3
Nottrott, S.4
Fabrizio, P.5
Bachi, A.6
Wilm, M.7
Rosbash, M.8
Branlant, C.9
Luhrmann, R.10
-
39
-
-
0031031451
-
Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing
-
Xia, L., Watkins, N., and Maxwell, E.S. 1997. Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing. RNA 3: 17-26.
-
(1997)
RNA
, vol.3
, pp. 17-26
-
-
Xia, L.1
Watkins, N.2
Maxwell, E.S.3
-
40
-
-
33646890462
-
The coiled-coiled domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation
-
Zhang, X., Champion, E.A., Tran, E., Brown, B., Baserga, S., and Maxwell, E.S. 2006. The coiled-coiled domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation. RNA 12: 1092-1103.
-
(2006)
RNA
, vol.12
, pp. 1092-1103
-
-
Zhang, X.1
Champion, E.A.2
Tran, E.3
Brown, B.4
Baserga, S.5
Maxwell, E.S.6
|