XPS investigation of DNA binding to zirconium-phosphonate surfaces

Colloids and Surfaces B: Biointerfaces

Volumn 58, Issue 1, 2007, Pages 34-38

  Lane, Sarah M ^a   Monot, Julien ^b   Petit, Marc ^b   Bujoli, Bruno ^b   Talham, Daniel R ^a  

^a University of Florida   (United States)

^b UNIVERSITÉ DE NANTES   (France)

Author keywords

Langmuir Blodgett films; Oligonucleotide arrays; Self assembled monolayers; XPS; Zirconium phosphonate

Indexed keywords

OLIGONUCLEOTIDE ARRAYS; POLYMER CHAINS; SURFACE COVERAGES; TERMINAL PHOSPHATES;

ADSORPTION; LANGMUIR BLODGETT FILMS; MOLECULES; OLIGONUCLEOTIDES; SELF ASSEMBLED MONOLAYERS; X RAY PHOTOELECTRON SPECTROSCOPY; ZIRCONIUM COMPOUNDS;

DNA;

OLIGONUCLEOTIDE; POLYMER; UNCLASSIFIED DRUG; ZIRCONIUM DERIVATIVE; ZIRCONIUM PHOSPHONATE;

ADSORPTION; ARTICLE; COVALENT BOND; DNA BINDING; NUCLEIC ACID IMMOBILIZATION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; SIGNAL DETECTION; SURFACE PROPERTY; X RAY PHOTOELECTRON SPECTROSCOPY;

DNA, SINGLE-STRANDED; PHOSPHONIC ACIDS; SPECTRUM ANALYSIS; SURFACE PROPERTIES; X-RAYS;

EID: 34249038030     PISSN: 09277765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.colsurfb.2006.12.015     Document Type: Article

References (24)

1. Lockhart D.J., Dong H.L., Byrne M.C., Follettie M.T., Gallo M.V., Chee M.S., Mittmann M., Wang C.W., Kobayashi M., Horton H., and Brown E.L. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14 (1996) 1675
2. Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray. Science 270 (1995) 467
3. Nonglaton G., Benitez I.O., Guisle I., Pipelier M., Leger J., Dubreuil D., Tellier C., Talham D.R., and Bujoli B. New approach to oligonucleotide microarrays using zirconium phosphonate-modified surfaces. JACS 126 (2004) 1497
4. Benitez I.O., Bujoli B., Camus L.J., Lee C.M., Odobel F., and Talham D.R. Monolayers as models for supported catalysts: zirconium phosphonate films containing manganese(III) porphyrins. JACS 124 (2002) 4363
5. Wu A.P., and Talham D.R. Photoisomerization of azobenzene chromophores in organic/inorganic zirconium phosphonate thin films prepared using a combined Langmuir-Blodgett and self-assembled monolayer deposition. Langmuir 16 (2000) 7449
6. Byrd H., Whipps S., Pike J.K., and Talham D.R. Molecular self-assembly at a preformed Langmuir-Blodgett template. Thin Solid Films 244 (1994) 768
7. Peterson A.W., Heaton R.J., and Georgiadis R.M. The effect of surface probe density on DNA hybridization. Nucleic Acids Res. 29 (2001) 5163
8. Georgiadis R., Peterlinz K.P., and Peterson A.W. Quantitative measurements and modeling of kinetics in nucleic acid monolayer films using SPR spectroscopy. JACS 122 (2000) 3166
9. Shchepinov M.S., Case-Green S.C., and Southern E.M. Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res. 25 (1997) 1155
10. Petrovykh D.Y., Kimura-Suda H., Whitman L.J., and Tarlov M.J. Quantitative analysis and characterization of DNA immobilized on gold. JACS 125 (2003) 5219
11. Leavitt A.J., Wenzler L.A., Williams J.M., Thomas J., and Beebe P. Angle-dependent X-ray photoelectron spectroscopy and atomic force microscopy of sulfur-modified DNA on Au(1 1 1). J. Phys. Chem. 98 (1994) 8742
12. Petrovykh D.Y., Kimura-Suda H., Tarlov M.J., and Whitman L.J. Quantitative characterization of DNA films by X-ray photoelectron spectroscopy. Langmuir 20 (2004) 429
13. Saprigin A.V., Thomas C.W., Dulcey C.S., Patterson C.H., and Spector M.S. Spectroscopic quantification of covalently immobilized oligonucleotides. Surf. Interface Anal. 36 (2004) 24
14. Frydman E., Cohen H., Maoz R., and Sagiv J. Monolayer damage in XPS measurements as evaluated by independent methods. Langmuir 13 (1997) 5089
15. Weng L.T., Vereecke G., Genet M.J., Bertrand P., and Stone W.E.E. Quantitative XPS. Part I: Experimental determination of the relative analyser transmission function of two different spectrometers-A critical assessment of various methods, parameters involved and errors introduced. Surf. Interface Anal. 20 (1993) 179
16. Lee H., Kepley L.J., Hong H.G., and Mallouk T.E. Inorganic analogs of Langmuir-Blodgett films-adsorption of ordered zirconium 1,10-decanebisphosphonate multilayers on silicon surfaces. JACS 110 (1988) 618
17. Lee H., Kepley L.J., Hong H.G., Akhter S., and Mallouk T.E. Adsorption of ordered zirconium phosphonate multilayer films on silicon and gold surfaces. J. Phys. Chem. 92 (1988) 2597
18. Thompson M.E. Use of layered metal phosphonates for the design and construction of molecular materials. Chem. Mater. 6 (1994) 1168
19. Byrd H., Pike J.K., and Talham D.R. Inorganic monolayers formed at an organic template-a Langmuir-Blodgett route to monolayer and multilayer films of zirconium octadecylphosphonate. Chem. Mater. 5 (1993) 709
20. Scofield J.H. Hartree-Slater subshell photoionization cross-sections at 1254 and 1487ev. J. Electron. Spectrosc. Relat. Phenom. 8 (1976) 129
21. C.J. Powell, A. Jablonski, NIST Electron Effective-Attenuation-Length Database, Version 1.0 (NIST SRD-82), 2001.
22. The band-gap energy determined from the average UV absorption maxima of the nucleotides, which is 4.8 eV
23. 3 was used
24. In reference 7, it was demonstrated that higher salt concentrations can lead to higher probe surface coverages