Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 5, 2007, Pages 923-931

  Cámara, Beatriz ^a   Strömpl, Carsten ^a   Verbarg, Susanne ^b   Spröer, Cathrin ^b   Pieper, Dietmar H ^a   Tindall, Brian J ^b  

^a HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; DNA TOPOISOMERASE (ATP HYDROLYSING) B; FATTY ACID; ISOPIMARIC ACID; RNA 16S; SALICYLIC ACID DERIVATIVE;

ARTICLE; BACTERIAL METABOLISM; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; LIPID COMPOSITION; MOLECULAR PHYLOGENY; NEW COMBINATION (TAXONOMY); NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS MOHNII; PSEUDOMONAS MOOREI; PSEUDOMONAS REINEKEI; RNA SEQUENCE; SPECIES DIFFERENCE; STRAIN DIFFERENCE;

BACTERIAL TYPING TECHNIQUES; CARBOXYLIC ACIDS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENANTHRENES; PHYLOGENY; PSEUDOMONAS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SALICYLATES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

BACTERIA (MICROORGANISMS); PSEUDOMONAS;

EID: 34249012407     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64703-0     Document Type: Article

References (38)

1. Ait Tayeb, L., Ageron, E., Grimont, F. & Grimont, P. A. (2005). Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates. Res Microbiol 156, 763-773.
2. Anzai, Y., Kim, H., Park, J. Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. Coenye, T. & Vandamme, P. (2003). Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes. FEMS Microbiol Lett 228, 45-49.
5. Cowan, S. T. & Steel, K. J. (1974). Cowan and Steel's Manual for the Identification of Medical Bacteria, 2nd edn. Cambridge: Cambridge University Press.
6. Dorn, E., Hellwig, M., Reineke, W. & Knackmuss, H. J. (1974). Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch Microbiol 99, 61-70.
7. Ernst R. K., Yi, E. C., Guo, L., Lim, K. B., Burns, J. L., Hackett M. & Miller, S. I. (1999). Specific lipopolysaccharide found in cystic fibrosis airway Pseudomonas aeruginosa. Science 286, 1561-1565.
8. Gerhardt P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
9. Hilario, E., Buckley, T. R. & Young, J. (2004). Improved resolution on the phylogenetic relationships among Pseudomonas by the combined analysis of atpD, carA, recA and 16S rDNA. Antonie van Leeuwenhoek 86, 51-64.
10. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. H. Munro. New York: Academic Press.
11. King, E. O., Ward, M. K. & Raney, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44, 301-307.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
13. Kwon, S. W., Kim, J. S., Park I. C., Yoon, S. H., Park D. H., Lim, C. K. & Go, S. J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
14. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G. & Hirsch, P. (1998). Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int J Syst Bacteriol 48, 1363-1372.
15. Martin, V. J., Yu, Z. & Mohn, W. W. (1999). Recent advances in understanding resin acid biodegradation: Microbial diversity and metabolism. Arch Microbiol 172, 131-138.
16. Mohn, W. W., Wilson, A. E., Bicho, P. & Moore E. R. (1999). Physiological and phylogenetic diversity of bacteria growing on resin acids. Syst Appl Microbiol 22, 68-78.
17. Moore, E. R. B., Mau, M., Arnscheidt, A., Böttger, E. C., Hutson, R. A., Collins, M. D., Van de Peer, Y., de Wachter, R. & Timmis, K. N. (1996). The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships. Syst Appl Microbiol 19, 478-492.
18. Nei, M. & Kumar, S. (2000). Molecular Evolution and Phylogenetics. New York: Oxford University Press.
19. Nelson, K. E., Weinel, C., Paulsen, I. T., Dodson, R. J., Hilbert, H., Martins dos Santos, V. A., Fouts, D. E., Gill, S. R., Pop, M. & other authors (2002). Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4, 799-808.
20. Nikodem, P., Hecht, V., Schlömann, M. & Pieper, D. H. (2003). New bacterial pathway for 4- and 5-chlorosalicylate degradation via 4-chlorocatechol and maleylacetate in Pseudomonas sp. strain MT1. J Bacteriol 185, 6790-6800.
21. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
22. Palleroni, N. J., Ballard, R. W., Ralston, E. & Doudoroff, M. (1972). Deoxyribonucleic acid homologies among some Pseudomonas species. J Bacteriol 110, 1-11.
23. Palleroni, N. J., Kunsawa, R., Contopoulou, R. & Doudoroff, M. (1973). Nucleic acid homologies in the genus Pseudomonas. Int J Syst Bacteriol 23, 333-339.
24. Pelz, O., Tesar, M., Wittich, R. M., Moore, E. R., Timmis, K. N. & Abraham, W. R. (1999). Towards elucidation of microbial community metabolic pathways: Unravelling the network of carbon sharing in a pollutant-degrading bacterial consortium by immunocapture and isotopic ratio mass spectrometry. Environ Microbiol 1, 167-174.
25. Pieper, D. H. & Reineke, W. (2004). Degradation of chloroaromatics by pseudomona(d)s. In Pseudomonas, pp. 509-574. Edited by J.-L. Ramos. New York: Kluwer Academic/Plenum Publishers.
26. Sohlenkamp, C., Lopez-Lara, I. M. & Geiger, O. (2003). Biosynthesis of phosphatidylcholine in bacteria. Prog Lipid Res 42, 115-162.
27. Stead, D. E (1992). Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. Int J Syst Bacteriol 42, 281-295.
28. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
30. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
31. Vancanneyt, M., Witt, S., Abraham, W.-R., Kersters, K. & Fredrickson, H. (1996). Fatty acid content in whole-cell hydrolysates and phospholipids fractions of pseudomonads: A taxonomic evaluation. Syst Appl Microbiol 19, 528-540.
32. Wayne, L. G, Good, R. C., Krichevsky, M. I., Blacklock Z., David, H. L., Dawson, D., Gross, W., Hawkins, J., Levy-Frebault, V. V. & other authors (1991). Fourth report of the cooperative, open-ended study of slowly growing mycobacteria by the International Working Group on Mycobacterial Taxonomy. Int J Syst Bacteriol 41, 463-472.
33. Wilkinson, S. G. (1968). Studies on the cell walls of Pseudomonas species resistant to ethylenediaminetetra-acetic acid. J Gen Microbiol 54, 195-213.
34. Wilson, A. E., Moore, E. R. & Mohn, W. W. (1996). Isolation and characterization of isopimaric acid-degrading bacteria from a sequencing batch reactor. Appl Environ Microbiol 62, 3146-3151.
35. Wittich, R. M, Strömpl, C., Moore, E. R., Blasco, R. & Timmis, K. N. (1999). Interaction of Sphingomonas and Pseudomonas strains in the degradation of chlorinated dibenzofurans. J Ind Microbiol Biotechnol 23, 353-358.
36. Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
37. Yamamoto, S., Bouvet P. J. & Harayama, S. (1999). Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA-DNA hybridization. Int J Syst Bacteriol 49, 87-95.
38. Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.