Nitrite metabolism in Debaryomyces hansenii TOB-Y7, a yeast strain involved in tobacco fermentation

Applied Microbiology and Biotechnology

Volumn 75, Issue 3, 2007, Pages 633-645

  Vigliotta, Giovanni ^a   Di Giacomo, Michele ^b   Carata, Elisabetta ^a   Massardo, Domenica R ^c   Tredici, Salvatore M ^a   Silvestro, Daniele ^b   Paolino, Marianna ^b   Pontieri, Paola ^c   Del Giudice, Luigi ^c   Parente, Dino ^b   Alifano, Pietro ^a  

^a UNIVERSITY OF SALENTO   (Italy)

^b Groupe SAUR   (Italy)

^c INSTITUTE OF GENETICS AND BIOPHYSICS ADRIANO BUZZATI TRAVERSO   (Italy)

Author keywords

Assimilatory NAD(P)H:nitrite reductase; Debaryomyces hansenii; Nitrogen metabolism; Tobacco fermentation

Indexed keywords

BIOCHEMISTRY; FERMENTATION; GENE ENCODING; HEALTH; NITROGEN; STRAIN; TOBACCO;

ASSIMILATORY NAD(P)H:NITRITE REDUCTASE; DEBARYOMYCES HANSENII; NITROGEN METABOLISM; TOBACCO FERMENTATION;

YEAST;

NITRITE; NITRITE REDUCTASE; NITROGEN;

ASSIMILATION EFFICIENCY; ENZYME ACTIVITY; FERMENTATION; GENE EXPRESSION; GENETIC ANALYSIS; METABOLISM; NITRITE; TOBACCO; YEAST;

ARTICLE; BIOACCUMULATION; BIOTECHNOLOGY; CONCENTRATION RESPONSE; DEBARYOMYCES HANSENII; FERMENTATION; FUNGAL STRAIN; LABORATORY; NITROGEN METABOLISM; NONHUMAN; NORTHERN BLOTTING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SOUTHERN BLOTTING; TOBACCO;

BLOTTING, NORTHERN; BLOTTING, SOUTHERN; EVOLUTION, MOLECULAR; FERMENTATION; FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; NITRITE REDUCTASES; NITRITES; NITROSAMINES; PHYLOGENY; RNA, RIBOSOMAL, 18S; SACCHAROMYCETALES; TIME FACTORS; TOBACCO;

BIOCHEMISTRY; GENETIC ENGINEERING; TOBACCO; YEASTS;

DEBARYOMYCES HANSENII; NICOTIANA TABACUM;

EID: 34248633364     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-0867-2     Document Type: Article

References (50)

1. Addis E, Fleet GH, Cox JM, Kolak D, Leung T (2001) The growth, properties and interactions of yeasts and bacteria associated with the maturation of Camembert and blue-veined cheeses. Int J Food Microbiol 69:25-36
2. Adler L, Blomberg A, Anders Nilsson A (1985) Glycerol metabolism and osmoregulation in the salt-tolerant yeast Debaryomyces hansenii. J Bacteriol 162:300-306
3. Avila J, Gonzalez C, Brito N, Siverio JM (1998) Clustering of the YNA1 gene encoding a Zn(II)2Cys6 transcriptional factor in the yeast Hansenula polymorpha with the nitrate assimilation genes YNT1, YNI1 and YNR1, and its involvement in their transcriptional activation. Biochem J 335:647-652
4. Besancon X, Smet C, Chabalier C, Rivemale M, Reverbel JP, Ratomahenina R, Galzy P (1992) Study of surface yeast flora of Roquefort cheese. Int J Food Microbiol 17:9-18
5. Brito N, Avila J, Perez MD, Gonzalez C, Siverio JM (1996) The genes YNI1 and YNR1, encoding nitrite reductase and nitrate reductase respectively in the yeast Hansenula polymorpha, are clustered and co-ordinately regulated. Biochem J 317:89-95
6. Brunnemann KD, Hoffmann D (1991) Analytical studies on tobacco-specific N-nitrosamines in tobacco and tobacco smoke. Crit Rev Toxicol 21:235-240
7. Choudary PV (1993) Ability to assimilate nitrogenous oxides is limited to a few species of yeasts. Microbios 74:241-248
8. Cocolin L, Rantsiou K, Iacumin L, Urso R, Cantoni C, Comi G (2004) Study of the ecology of fresh sausages and characterization of populations of lactic acid bacteria by molecular methods. Appl Environ Microbiol 70:1883-1894
9. Collins PF, Lawrence WW, Williams JF (1972) An automated procedure for the determination of ammonia in tobacco. Beitr Tabakforsch Int 6:167-172
10. Cosentino S, Fadda ME, Deplano M, Mulargia AF, Palmas F (2001) Yeasts associated with Sardinian ewe's dairy products. Int J Food Microbiol 69:53-58
11. Di Giacomo M, Paolino M, Silvestro D, Vigliotta G, Imperi F, Visca P, Alifano P, Parente D (2007) Microbial community structure and dynamics of dark fire-cured tobacco fermentation. Appl Environ Microbiol 73:825-837
12. Fatichenti F, Bergere JL, Deiana P, Farris GA (1983) Antagonistic activity of Debaryomyces hansenii towards Clostridium tyrobutyricum and Cl. butyricum. J Dairy Res 50:449-457
13. Garcia-Lugo P, Gonzalez C, Perdomo G, Brito N, Avila J, de La Rosa JM, Siverio JM (2000) Cloning, sequencing, and expression of H.a.YNR1 and H.a.YNI1, encoding nitrate and nitrite reductases in the yeast Hansenula anomala. Yeast 16:1099-1105
14. Giovannozzi M (1948) La fermentazione dei tabacchi. Società Anonima Editrice Dante Alighieri, Genova, Roma, Napoli, Città di Castello
15. Granger DL, Taintor RR, Boockvar KS, Hibbs JBJ (1995) Determination of nitrate and nitrite in biological samples using bacterial nitrate reductase coupled with the Griess reaction. Methods 7:78-83
16. Hoffmann D, Brunnemann KD, Prokopczyk B, Djordevic MV (1994) Tobacco-specific N-nitrosamines and Areca-derived N-nitrosamines: chemistry, biochemistry, carcinogenicity, and relevance to humans. J Toxicol Environ Health 41:1-52
17. Klassen R, Teichert S, Meinhardt F (2004) Novel yeast killer toxins provoke S-phase arrest and DNA damage checkpoint activation. Mol Microbiol 53:263-273
18. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
19. Leclercq-Perlat MN, Oumer A, Bergere JL, Spinnler HE, Corrieu G (2000) Behavior of Brevibacterium linens and Debaryomyces hansenii as ripening flora in controlled production of smear soft cheese from reconstituted milk: growth and substrate consumption. J Dairy Sci 83:1665-1673
20. Lord NS, Kaplan CW, Shank P, Kitts CL, Elrod SL (2002) Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: comparison of 18S and ITS ribosomal regions. FEMS Microbiol Ecol 42:327-337
21. Manna F, Massardo DR, Alifano P, Wolf K, Del Giudice L (1996) A simple and inexpensive method for RNA extraction from yeasts. Trends Genet 12:337-338
22. Mohammed SI, Steenson LR, Kirleis AW (1991) Isolation and characterization of microorganisms associated with the traditional sorghum fermentation for production of Sudanese Kisra. Appl Environ Microbiol 57:2529-2533
23. Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM (2005) Surface microflora of four smear-ripened cheeses. Appl Environ Microbiol 71:6489-6500
24. Nakano MM, Hoffmann T, Zhu Y, Jahn D (1998) Nitrogen and oxygen regulation of Bacillus subtilis nasDEF encoding NADH-dependent nitrite reductase by TnrA and ResDE. J Bacteriol 180:5344-5350
25. Nakase T, Suzuki M (1985) Taxonomic studies on Debaryomices hansenii (Zopf) Lodder at Kreger-Van Rij and related species. I Chemotaxonomic investigations J Gen Appl Microbiol 31:49-69
26. Petersen KM, Westall S, Jespersen L (2002) Microbial succession of Debaryomyces hansenii strains during the production of Danish surfaced-ripened cheeses. J Dairy Sci 85:478-486
27. Prillinger H, Molnar O, Eliskases-Lechner F, Lopandic K (1999) Phenotypic and genotypic identification of yeasts from cheese. Antonie Van Leeuwenhoek 75:267-283
28. Prista C, Loureiro-Dias MC, Montiel V, Garcia R, Ramos J (2005) Mechanisms underlying the halotolerant way of Debaryomyces hansenii. FEMS Yeast Res 5:693-701
29. Qiu J (1999) Statistics aided optimization for high-performance liquid chromatographic analysis of organic acids in tobacco. J Chromatogr 859:153-158
30. Rantsiou K, Urso R, Iacumin L, Cantoni C, Cattaneo P, Comi G, Cocolin L (2005) Culture-dependent and -independent methods to investigate the microbial ecology of Italian fermented sausages. Appl Environ Microbiol 71:1977-1986
31. Roostita R, Fleet GH (1996a) The occurrence and growth of yeasts in Camembert and blue-veined cheeses. Int J Food Microbiol 28:393-404
32. Roostita R, Fleet GH (1996b) Growth of yeasts in milk and associated changes to milk composition. Int J Food Microbiol 31:205-219
33. Sakakibara H, Takei K, Sugiyama T (1996) Isolation and characterization of a cDNA that encodes maize uroporphyrinogen III methyltransferase, an enzyme involved in the synthesis of siroheme, which is prosthetic group of nitrite reductase. Plant J 10:883-892
34. Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA
35. Sengupta S, Shaila MS, Rao GR (1996) Purification and characterization of assimilatory nitrite reductase from Candida utilis. Biochem J 317:147-155
36. Sengupta S, Subbarao Shaila M, Rao GR (1997) A novel autophosphorylation mediated regulation of nitrite reductase in Candida utilis. FEBS Lett 416:51-56
37. Siverio JM (2002) Assimilation of nitrate by yeasts. FEMS Microbiol Rev 26:277-284
38. Smit E, Leeflang P, Glandorf B, van Elsas JD, Wernars K (1999) Analysis of fungal diversity in the wheat rhizosphere by sequencing of cloned PCR-amplified genes encoding 18S rRNA and temperature gradient gel electrophoresis. Appl Environ Microbiol 65:2614-2621
39. Takasaki K, Shoun H, Nakamura A, Hoshino T, Takaya N (2004a) Unusual transcription regulation of the niaD gene under anaerobic conditions supporting fungal ammonia fermentation. Biosci Biotechnol Biochem 68:978-980
40. Takasaki K, Shoun H, Yamaguchi M, Takeo K, Nakamura A, Hoshino T, Takaya N (2004b) Fungal ammonia fermentation, a novel metabolic mechanism that couples the dissimilatory and assimilatory pathways of both nitrate and ethanol. Role of acetyl CoA synthetase in anaerobic ATP synthesis. J Biol Chem 279:12414-12420
41. Takaya N (2002) Dissimilatory nitrate reduction metabolisms and their control in fungi. J Biosci Bioeng 94:506-510
42. Technikova-Dobrova Z, Damiano F, Tredici SM, Vigliotta G, di Summa R, Palese L, Abbrescia A, Labonia N, Gnoni GV, Alifano P (2004) Design of mineral medium for growth of Actinomadura sp. ATCC 39727, producer of the glycopeptide A40926: effects of calcium ions and nitrogen sources. Appl Microbiol Biotechnol 65:671-677
43. Testa F, Marconi A (2000) Il Toscano, Guida Completa Al Sigaro Italiano. Giunti, Firenze
44. Thomé PE (2004) Isolation of a GPD gene from Debaryomyces hansenii encoding a glycerol 3-phosphate dehydrogenase (NAD+). Yeast 21:119-126
45. Uchida M, Murata M (2004) Isolation of a lactic acid bacterium and yeast consortium from a fermented material of Ulva spp. (Chlorophyta). J Appl Microbiol 97:1297-1310
46. Vega JM, Greenbaum P, Garrett RH (1975) Studies on the in vitro inactivation of the Neurospora crassa assimilatory nitrite reductase in the presence of reduced pyridine nucleotides plus flavin. Biochim Biophys Acta 377:251-257
47. Veiga A, Arrabaca JD, Sansonetty F, Ludovico P, Corte-Real M, Loureiro-Dias MC (2003) Energy conversion coupled to cyanide-resistant respiration in the yeasts Pichia membranifaciens and Debaryomyces hansenii. FEMS Yeast Res 3:141-148
48. Vigliotta G, Tredici SM, Damiano F, Montinaro MR, Pulimeno R, di Summa R, Massardo DR, Gnoni GV, Alifano P (2005) Natural merodiploidy involving duplicated rpoB alleles affects secondary metabolism in a producer actinomycete. Mol Microbiol 55:396-412
49. Welthagen JJ, Viljoen BC (1998) Yeast profile in Gouda cheese during processing and ripening. Int J Food Microbiol 41:185-194
50. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols. A guide to methods and applications. Academic, San Diego, CA, pp 315-322