A population genetics model with recombination hotspots that are heterogeneous across the population

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 11, 2007, Pages 4748-4752

  Calabrese, Peter ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; CHIMPANZEE; GENE LINKAGE DISEQUILIBRIUM; GENETIC MODEL; GENETIC RECOMBINATION; HUMAN; HUMAN GENOME; NONHUMAN; POPULATION GENETICS; PRIORITY JOURNAL; SPERM; ANIMAL; BIOLOGICAL MODEL; CHROMOSOME; ETHNIC AND RACIAL GROUPS; GENOME; MALE; METABOLISM; PAN TROGLODYTES; SPERMATOZOON; STATISTICAL MODEL; THEORETICAL MODEL;

PAN;

ANIMALS; CHROMOSOMES; GENETICS, POPULATION; GENOME, HUMAN; HUMANS; LINKAGE DISEQUILIBRIUM; MALE; MODELS, GENETIC; MODELS, STATISTICAL; MODELS, THEORETICAL; PAN TROGLODYTES; POPULATION GROUPS; RECOMBINATION, GENETIC; SPERMATOZOA;

EID: 34248364837     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0610195104     Document Type: Article

References (45)

1. Crawford D, Bhangale T, Li N, Hellenthal G, Rieder M, Nickerson D, Stephens M (2004) Nat Genet 36:700-706.
2. Myers S, Bottolo L, Freeman C, McVean G, Donnelly P (2005) Science 310:321-324.
3. The International HapMap Consortium (2005) Nature 437:1299-1320.
4. Jeffreys A, Richie A, Neumann R (2000) Hum Mol Genet 9:724-733.
5. Jeffreys A, Kauppi L, Neumann R (2001) Nat Genet 29:217-222.
6. Tiemann-Boege I, Calabrese P, Cochran D, Sokol R, Arnheim N (2006) PLoS Genet 2:0020070.
7. Kauppi L, Jeffreys A, Keeney S (2004) Nat Rev Genet 5:413-424.
8. Carrington M, Cullen M (2004) Trends Genet 20:196-205.
9. Wiuf C, Posada D (2003) Genetics 164:407-417.
10. Li N, Stephens M (2003) Genetics 165:2213-2233.
11. McVean G, Myers S, Hunt S, Deloukas P, Bentley D, Donnelly P (2004) Science 304:581-584.
12. Hudson R (1983) Theor Popul Biol 23:183-201.
13. Griffiths R, Marjoram P (1996) J Comp Biol 3:479-502.
14. Griffiths R, Marjoram P (1997) in Progress in Population Genetics and Human Evolution, eds Donnelly P, Tavaré S (Springer, New York), pp 257-270.
15. Simonsen K, Churchill G (1997) Theor Popul Biol 52:43-59.
16. Wiuf C, Hein J (1999) Theor Popul Biol 55:248-259.
17. Neumann R, Jeffreys A (2006) Hum Mol Genet 15:1401-1411.
18. Winckler W, Myers S, Richter D, Onofrio R, McDonald G, Bontrop R, McVean G, Gabriel S, Reich D, Donnelly P, Altshuler D (2005) Science 308:107-111.
19. Ptak S, Hinds D, Koehler K, Nickel B, Patil N, Ballinger D, Przeworski M, Frazer K, Paabo S (2005) Nat Genet 37:429-434.
20. Szostak J, Orr-Weaver T, Rothstein R, Stahl F (1983) Cell 33:25-35.
21. Petes T (2001) Nat Rev Genet 2:360-369.
22. Boulton A, Myers R, Redfield R (1997) Proc Natl Acad Sci USA 94:8058-8063.
23. Pineda-Krch M, Redfield R (2005) Genetics 169:2319-2333.
24. Steiner W, Smith G (2005) Mol Cell Biol 25:9054-9062.
25. Steiner W, Schreckhise R, Smith G (2002) Mol Cell 9:847-855.
26. Jeffreys A, May C (2004) Nat Genet 36:151-156.
27. Smith G, Amundsen S, Chaudhury A, Cheng K, Ponticelli A, Roberts C, Schultz D, Taylor A (1984) Cold Spring Harb Symp Quant Biol 49:485-495.
28. Myers R, Stahl F (1994) Ann Rev Genet 28:49-70.
29. Fox M, Yamada T, Ohta K, Smith G (2000) Genetics 156:59-68.
30. Myers S, Spencer C, Auton A, Bottolo L, Freeman C, Donnelly P, McVean G (2006) Biochem Soc Trans 34:526-530.
31. Jeffreys A, Neumann R (2002) Nat Genet 31:267-271.
32. Jeffreys A, Neumann R (2005) Hum Mol Genet 14:2277-2287.
33. Clark A (2005) Nat Genet 37:563-564.
34. Nordborg M (2001) in Handbook of Statistical Genetics, eds Balding D, Bishop M, Cannings C (Wiley, New York), pp 179-212.
35. Nagylaki T (1983) Proc Natl Acad Sci USA 80:5941-5945.
36. Naglyaki T (1983) Proc Natl Acad Sci USA 80:6278-6281.
37. Wiuf C, Hein J (2000) Genetics 155:451-462.
38. Wiuf C (2000) Theor Popul Biol 57:357-367.
39. Morton N (1982) Outline of Genetic Epidemiology (Karger, Basel).
40. The Chimpanzee Sequencing and Analysis Consortium (2005) Nature 437:69-87.
41. Templeton A (2002) Nature 416:45-51.
42. Karlin S, Taylor H (1981) A Second Course in Stochastic Processes (Academic, New York).
43. Ewens W (2004) Mathematical Population Genetics (Springer, New York).
44. Hudson R (1990) Oxford Surv Evol Biol 7:1-44.
45. Kaplan N, Darden T, Hudson R (1988) Genetics 120:819-829.