Evolutionary history of Stratiomyidae (Insecta: Diptera): The molecular phylogeny of a diverse family of flies

Molecular Phylogenetics and Evolution

Volumn 43, Issue 2, 2007, Pages 660-673

  Brammer, Colin A ^a   von Dohlen, Carol D ^a  

^a UTAH STATE UNIVERSITY   (United States)

Author keywords

Clitellariinae; Diptera; Divergence dates; Diversification; Molecular dating; Soldier flies

Indexed keywords

RIBOSOME DNA; RNA 28S;

ANIMAL; ARTICLE; CLASSIFICATION; FLY; GENE; GENETICS; PHYLOGENY;

ANIMALS; DIPTERA; DNA, RIBOSOMAL; GENES, INSECT; PHYLOGENY; RNA, RIBOSOMAL, 28S;

BRACHYCERA; CLITELLARIINAE; DIPTERA; INSECTA; RAPHIOCERINAE; SOLVA; STRATIOMYIDAE; STRATIOMYINAE; XYLOMYIDAE;

EID: 34248195599     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2006.09.006     Document Type: Article

References (84)

1. Barker F.K., and Lutzoni F.M. The utility of the incongruence length difference test. Syst. Biol. 51 (2002) 625-637
2. Bernasconi M.V., Pawlowski J., Valsangiacomo C., Piffaretti J.-C., and Ward P.I. Phylogeny of the Scathophagidae (Diptera: Calyptratae) based on mitochondrial DNA sequences. Mol. Phylogenet. Evol. 16 (2000) 308-315
3. Bernasconi M.V., Pawlowski J., Valsangiacomo C., Piffaretti J.-C., and Ward P.I. Phylogeny of the genus Scathophaga (Diptera: Scathophagidae) inferred from mitochondrial DNA sequences. Can. J. Zool. 79 (2001) 517-524
4. Borror D.J., Triplehorn C.A., and Johnson N.F. An Introduction to the Study of Insects (1989), Saunders College Publishing, Philadelphia
5. Brauer F. Zweiflugler des Kaiserlichen Museums zu Wien. II. Denkschriften der Kaiserlichen Akademie der Wissenschaften Mathematisch-Naturwissenschaftliche Classe. Wien 44 (1882) 59-110
6. Brower A.V.Z., and DeSalle R. Practical and theoretical considerations for choice of a DNA sequence region in insect molecular systematics, with a short review of published studies using nuclear gene regions. Ann. Entomol. Soc. Am. 87 (1994) 702-716
7. Carreno R.A., and Barta J.R. Small subunit ribosomal RNA genes of tabanids and hippoboscids (Diptera: Brachycera): evolutionary relationships and comparison with other Diptera. J. Med. Entomol. 35 (1998) 1002-1006
8. Chen X., Li S., Li C., Zhao S., and Serap A. Phylogeny of genus Glossina (Diptera: Glossinidae) according to ITS2 sequences. Sci. China (Ser. C) Life Sci. 42 (1999) 249-258
9. Cunningham C.W. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46 (1997) 464-478
10. Cunningham C.W. Can three incongruence tests predict when data should be combined?. Mol. Biol. Evol. 14 (1997) 733-740
11. Cunningham C.W. Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses. Syst. Biol. 48 (1999) 665-674
12. Dowling T.E., Moritz C., Palmer J.D., and Rieseberg L.H. Nucleic acids III: analysis of fragments and restriction sites. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics (1996), Sinauer Associates, Inc., Sunderland, Massachusetts 249-320 Chapter 8
13. Farris J.S., Kallersjo M., Kluge A.G., and Bult C. Constructing a significance test for incongruence. Syst. Biol. 44 (1995) 572-575
14. Friedlander T.P., Regier J.C., and Mitter C. Nuclear gene sequences for higher level phylogenetic analysis: 14 promising candidates. Syst. Biol. 41 (1992) 483-490
15. Friedrich M., and Tautz D. Evolution and phylogeny of the Diptera: a molecular phylogenetic analysis using 28S rDNA sequences. Syst. Biol. 46 (1997) 674-698
16. Goloboff, P.A., 1997. NONA, version 2.0. Computer program distibuted by P.A. Goloboff. American Museum of Natural History, New York.
17. Grimaldi D., and Cumming J. Brachyceran Diptera in Cretaceous ambers and Mesosoic diversification of the Eremoneura. Bull. Am. Mus. Nat. Hist. 239 (1999) 1-121
18. Guryev V., Makarevitch I., Blinov A., and Martin J. Phylogeny of the genus Chironomus (Diptera) inferred from DNA sequences of mitochondrial cytochrome b and cytochrome oxidase I. Mol. Phylogenet. Evol. 19 (2001) 9-21
19. Han H.-Y. Molecular phylogenetic study of the tribe Trypetini (Diptera: Tephritidae), using mitochondrial 16S ribosomal DNA sequences. Biochem. Syst. Ecol. 28 (2000) 501-513
20. James M.T. The Stratiomyidae of Colorado and Utah. J. Kans. Entomol. Soc. 9 (1936) 33-48
21. James M.T. A preliminary review of certain families of Diptera from the Florissant Miocene beds. J. Paleolimnol. 11 (1937) 241-247
22. James M.T. Some new and little-known Neotropical and subtropical Stratiomyidae. Bull. Brooklyn Entomol. Soc. 32 (1937) 149-155
23. James M.T. Neotropical flies of the family Stratiomyidae in the United States National Museum. Proc. U.S. Natl. Mus. 86 (1939) 595-607
24. James M.T. New species and records of Mexican Stratiomyidae (Diptera). Anales de la Escuela Nacional de Ciencias Biologicas 2 (1941) 241-249
25. James M.T. Some new and poorly-known Adoxomyiinae (Diptera, Stratiomyidae) from the southwest. J. Kans. Entomol. Soc. 23 (1950) 71-73
26. James M.T. A preliminary review of the Argentine genera and species of Stratiomyidae (Diptera). Part I. Stratiomyinae. Acta Zoologica Lilloana 13 (1953) 307-326
27. James M.T. Diptera: Stratiomyidae, Calliphoridae. Insects Micrones. 13 (1962) 75-127
28. James M.T. Family Stratiomyidae. In: Stone A., Sabrosky C.W., Wirth W.W., Foote R.H., and Coulson J.R. (Eds). A Catalog of the Diptera of America North of Mexico (1965), ARS-USDA, Washington, DC 299-319
29. James M.T. A new stratiomyid pest of sugar cane in Australia (Diptera: Stratiomyidae). J. Aust. Entomol. Soc. 7 (1968) 155-157
30. James M.T. The soldier flies (Diptera:Stratiomyidae) collected in the Philippine Islands by the Noona Dan Expedition. Entomol. Med. 37 (1969) 339-350
31. James M.T. Family Stratiomyidae. A Catalogue of the Diptera of the Americas South of the United States (1973), Museu de Zoologia, Universidade de Sao Paulo, Sao Paulo 1-95 Chapter 26
32. James M.T. Stratiomyidae. In: McAlpine J.F., Peterson B.V., Shewell G.E., Teskey H.J., Vockeroth J.R., and Wood D.M. (Eds). Manual of Nearctic Diptera (1981), Research Branch, Agriculture Canada, Ottawa 497-511 Chapter 36
33. Jorgensen N.M., and James M.T. Evolution of the antenna in the Stratiomyidae (Diptera). Ann. Entomol. Soc. Am. 61 (1968) 870-878
34. Kishino H., Thorne J.L., and Bruno W.J. Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol. Biol. Evol. 18 (2001) 352-361
35. Krivosheina N.P. Phylogeny of lower Brachycera (Diptera), a new view. Acta Entomol. Bohemoslov. 88 (1991) 81-93
36. Krzywinski J., Wilkerson R.C., and Besansky N.J. Toward understanding Anophelinae (Diptera, Culicidae) phylogeny: insights from nuclear single-copy genes and the weight of evidence. Syst. Biol. 50 (2001) 540-556
37. Latreille, P.A., 1802. Histoire naturelle, genérale et particulière, des Crustacés et des Insectes. Ouvrage faisant suite à l'Histoire Naturelle genérale et particulière, composée par Leclerc de Buffon, et rédigée par C.S. Sonnini, membre de plusieurs Sociétés savantes. Tome Troisième. F. Dufart, Paris, i-xiii, 13-467.
38. Lee M.S.Y. Uninformative characters and aparent conflict between molecules and morphology. Mol. Biol. Evol. 18 (2001) 676-680
39. Lindner E. Dr. L. Zurchers Dipteren-Ausbeute aus Paraguay: Stratiomyiiden. Archiv fur Naturgeschichte Abteilung A 92 (1928) 94-103
40. Lindner E. Die von Prof. Dr. A. Seitz in Brasilien gesammelten Stratiomyiden (Ins. Dipt.). Senckenbergiana 10 (1928) 235-244
41. Lindner E. Die Ausbeute der deutschen Chaco-Expedition 1925/26. (Diptera). Konowia 8 (1929) 273-285
42. Lindner E. Ergebnisse einer zoologischen Sammelreise nach Brasilien, insbesondere in das Amazonasgebiet, ausgefurt von Dr. H. Zerny. II. Teil. Diptera: Stratiomyidae und Rhagionidae. Annalen des Naturhistorischen Museums in Wien 43 (1929) 257-268
43. Lindner E. Zweiter Beitrag zur Kenntnis der Sudamerikanischen Stratiomyiden fauna (Dipt.). Revista de Entomologia 3 (1933) 199-205
44. Lindner E. Neotropische Stratiomyiiden des Senckenberg-Museums (Diptera.). Senckenbergiana 15 (1933) 325-334
45. Lindner E. Stratiomyiiden von Costa Rica (Dipt.). Stettiner Entomologische Zeitung 97 (1936) 153-158
46. Lindner E. Sudchilenische Stratiomyiiden (Dipt.). Annalen des Naturhistorischen Museums in Wien 53 (1943) 89-100
47. Lindner E. Vierter Beitrag zur Kenntnis der suedamerikanischen Stratiomyiidenfauna (Dipt.). Rev. de Entomologia 22 (1951) 245-264
48. Maddison D.R., and Maddison W.P. MacClade 4: Analysis of Phylogeny and Character Evolution. 4.0 (2000), Sinaur Associates, Sunderland, Massachusetts
49. McFadden M.W. Soldier fly larvae in America north of Mexico. Proc. U.S. Natl. Mus. 121 (1967) 1-72
50. Moulton J.K. Molecular sequence data resolves basal divergences within Simuliidae (Diptera). Syst. Entomol. 25 (2000) 95-113
51. O'Grady P.M., and Kidwell M.G. Phylogeny of the subgenus Sophophora (Diptera: Drosophilidae) based on combined analysis of nuclear and mitochondrial sequences. Mol. Phylogenet. Evol. 22 (2002) 442-453
52. Pimentel T., and Pujol-Luz J.R. Os generos de Raphiocerinae (Diptera, Stratiomyidae) do Brasil e algumas especies da America do Sul. Parte 1 - a tribo Analcocerini (sensu Enderlein, 1914). Contribuicoes Avulsas Sobre a Historia Natural do Brasil, Serie Zoologia 23 (2000) 1-18
53. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
54. Pujol-Luz J.R., de Xerez R., and Viana G.G. Descrição do pupário de Raphiocera armata (Wiedemann) (Diptera, Stratiomyidae) da Ilha da Marambaia, Rio de Janeiro, Brazil. Rev. Bras. Zool. 21 (2004) 995-999
55. Ronquist, F., Huelsenbeck, J.P., 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Version 3. Uppsala, Norway.
56. Rozkosny, R., 1983. A biosystematic study of the European Stratiomyidae (Diptera), vol. 2. Clitellariinae, Hermetiinae, Pachygastrinae and Bibliography. Dr. W. Junk. The Hague, Boston, London, 1-431.
57. Rutschmann F. Bayesian Molecular Dating Using PAML/Multidivtime. A Step-by-Step Manual (2004), University of Zurich, Switzerland
58. Samson P.R. Effect of feeding by larvae of Inopus rubriceps (Diptera: Stratiomyidae) on development and growth of sugarcane. J. Econ. Entomol. 94 (2001) 1097-1103
59. Sanderson M.J. A nonparametric approach to estimating divergence times in the absence of rate constancy. Mol. Biol. Evol. 14 (1997) 1218-1231
60. Sanderson, M.J., 2002. r8s. 1.50. Davis, California.
61. Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19 (2002) 101-109
62. Sanmartín I., and Ronquist F. Southern hemisphere biogeography inferred by event-based models: plant versus animal patterns. Syst. Biol. 53 (2004) 216-243
63. Sheppard C. House fly and lesser fly control utilizing the black soldier fly in manure management systems for caged laying hens. Environ. Entomol. 12 (1983) 1439-1442
64. Simon C., Frati F., Beckenbach A., Crespi B., Lui H., and Flook P. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87 (1994) 651-701
65. Skevington J.H., and Yeates D.K. Phylogeny of the Syrphoidea (Diptera) inferred from mtDNA sequences and morphology with particular reference to classification of the Pipunculidae (Diptera). Mol. Phylogenet. Evol. 16 (2000) 212-224
66. Stahls G., Hippa H., Rotheray G., Muona J., and Gilbert F. Phylogeny of Syrphidae (Diptera) inferred from combined analysis of molecular and morphological characters. Syst. Entomol. 28 (2003) 433-450
67. Stireman III J.O. Phylogenetic relationships of tachinid flies in subfamily Exoristinae (Tachinidae: Diptera) based on 28S rDNA and elongation factor-1α. Syst. Entomol. 27 (2002) 409-435
68. Swofford, D.L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). 4.0. Sinauer Associates, Sunderland, Massachusetts.
69. Teskey H.J. A new soldier fly from Canadian amber (Diptera: Stratiomyidae). Can. Entomol. 103 (1971) 1659-1661
70. Thorne, J.L., 2001. Multidivtime. 1.5. Raleigh, North carolina.
71. Thorne J.L., and Kishino H. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51 (2002) 689-702
72. Thorne J.L., Kishino H., and Painter I.S. Estimating the rate of evolution of the rate of molecular evolution. Mol. Biol. Evol. 15 (1998) 1647-1657
73. von Dohlen C.D., Kurosu U., and Aoki S. Phylogenetics and evolution of the eastern Asian-eastern North American disjunct aphid tribe, Hormaphidini (Hemiptera: Aphididae). Mol. Phylogenet. Evol. 23 (2002) 257-267
74. Wiegmann B.M., Tsaur S.-C., Webb D.W., Yeates D.K., and Cassel B.K. Monophyly and relationships of the Tabanomorpha (Diptera: Brachycera) based on 28S ribosomal gene sequences. Ann. Entomol. Soc. Am. 93 (2000) 1031-1038
75. Wiegmann B.M., Yeates D.K., Thorne J.L., and Kishino H. Time flies, a new molecular time-scale for Brachyeran fly evolution without a clock. Syst. Biol. 52 (2003) 745-756
76. Winterton S.L., Yang L.L., Wiegmann B.M., and Yeats D.K. Phylogenetic revision of Agapophytinae subf. n. (Diptera: Therevidae) based on molecular and morphological evidence. Syst. Entomol. 26 (2001) 173-211
77. Woodburne M.O., and Case J.A. Dispersal, vicariance, and the late Cretaceous to early Tertiary land mammal biogeography from South America to Australia. J. Mamm. Evol. 3 (1996) 121-161
78. Woodley N.E. Parhadrestiinae, a new Subfamily for Parhadrestina James and Cretaceogaster Teskey (Diptera: Stratiomyidae). Syst. Entomol. 11 (1986) 377-387
79. Woodley N.E. Phylogeny and Classification of the Orthorrhaphous" Brachycera. In: McAlpine J.F., and Wood D.M. (Eds). Manual of Nearctic Diptera (1989), Research Branch Agriculture Canada, Ottowa, Ontario 1371-1395 Chapter 115
80. Woodley N.E. The genera of Beridinae (Diptera: Stratiomyidae). Mem. Entomol. Soc. Wash. 16 (1995) 1-231
81. Woodley N.E. World Catalog of the Stratiomyidae (Insecta: Diptera) (2001), Backhuys Publishers, Leiden
82. Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
83. Yang L., Wiegmann B.M., Yeats D.K., and Irwin M.E. Higher level phylogeny of the Therevidae (Diptera: Insecta) based on 28S ribosomal and elongation factor-1α gene sequences. Mol. Phylogenet. Evol. 15 (2000) 440-451
84. Yoder A.D., Irwin J.A., and Payseur B.A. Failure of the ILD to determine data combinability for slow Loris phylogeny. Syst. Biol. 50 (2001) 408-424