메뉴 건너뛰기




Volumn 175, Issue 2, 2007, Pages 585-593

Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE DEACETYLASE; HISTONE H3; LYSINE; LYSINE 36; UNCLASSIFIED DRUG; DOT1 PROTEIN, S CEREVISIAE; HISTONE; METHYLTRANSFERASE; NUCLEAR PROTEIN; RPD3 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; SET2 PROTEIN, S CEREVISIAE; SILENT INFORMATION REGULATOR PROTEIN;

EID: 34247842881     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.106.067751     Document Type: Article
Times cited : (42)

References (44)
  • 1
    • 0035910395 scopus 로고    scopus 로고
    • Insulators and boundaries: Versatile regulatory elements in the eukaryotic
    • BELL, A. C., A. G. WEST and G. FELSENFELD, 2001 Insulators and boundaries: versatile regulatory elements in the eukaryotic. Science 291: 447-450.
    • (2001) Science , vol.291 , pp. 447-450
    • BELL, A.C.1    WEST, A.G.2    FELSENFELD, G.3
  • 2
    • 0023484186 scopus 로고
    • 5-Fluoroorotic acid as a selective agent in yeast molecular genetics
    • BOEKE, J. D., J. TRUEHEART, G. NATSOULIS and G. R. FINK, 1987 5-Fluoroorotic acid as a selective agent in yeast molecular genetics. Methods Enzymol. 154: 164-175.
    • (1987) Methods Enzymol , vol.154 , pp. 164-175
    • BOEKE, J.D.1    TRUEHEART, J.2    NATSOULIS, G.3    FINK, G.R.4
  • 3
    • 0037085264 scopus 로고    scopus 로고
    • Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3
    • CARMEN, A. A., L. MILNE and M. GRUNSTEIN, 2002 Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3 J. Biol. Chem. 277: 4778-4781.
    • (2002) J. Biol. Chem , vol.277 , pp. 4778-4781
    • CARMEN, A.A.1    MILNE, L.2    GRUNSTEIN, M.3
  • 4
    • 27744577727 scopus 로고    scopus 로고
    • Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
    • CARROZZA, M. J., B. LI, L. FLORENS, T. SUGANUMA, S. K. SWANSON et al., 2005 Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123: 581-592.
    • (2005) Cell , vol.123 , pp. 581-592
    • CARROZZA, M.J.1    LI, B.2    FLORENS, L.3    SUGANUMA, T.4    SWANSON, S.K.5
  • 5
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DERISI, J. L., V. R. IYER and P. O. BROWN, 1997 Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DERISI, J.L.1    IYER, V.R.2    BROWN, P.O.3
  • 6
    • 0035254535 scopus 로고    scopus 로고
    • RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae
    • DONZE, D., and R. T. KAMAKAKA, 2001 RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae. EMBO J. 20: 520-531.
    • (2001) EMBO J , vol.20 , pp. 520-531
    • DONZE, D.1    KAMAKAKA, R.T.2
  • 7
    • 0035793642 scopus 로고    scopus 로고
    • The yeast NuA4 and Drosophila MSL complexes contain homologous subunits important for transcription regulation
    • EISEN, A., R. T. UTLEY, A. NOURANI, S. ALLARD, P. SCHMIDT et al., 2001 The yeast NuA4 and Drosophila MSL complexes contain homologous subunits important for transcription regulation. J. Biol. Chem. 276: 3484-3491.
    • (2001) J. Biol. Chem , vol.276 , pp. 3484-3491
    • EISEN, A.1    UTLEY, R.T.2    NOURANI, A.3    ALLARD, S.4    SCHMIDT, P.5
  • 8
    • 0037172665 scopus 로고    scopus 로고
    • Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain
    • FENG, Q., H. WANG, H. H. NG, H. ERDJUMENT-BROMAGE, P. TEMPST et al., 2002 Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain. Curr. Biol. 12: 1052-1058.
    • (2002) Curr. Biol , vol.12 , pp. 1052-1058
    • FENG, Q.1    WANG, H.2    NG, H.H.3    ERDJUMENT-BROMAGE, H.4    TEMPST, P.5
  • 9
    • 29144531244 scopus 로고    scopus 로고
    • Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
    • GUILLEMETTE, B., A. R. BATAILLE, N. GEVRY, M. ADAM, M. BLANCHETTE et al., 2005 Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. PLoS Biol. 3: e384.
    • (2005) PLoS Biol , vol.3
    • GUILLEMETTE, B.1    BATAILLE, A.R.2    GEVRY, N.3    ADAM, M.4    BLANCHETTE, M.5
  • 10
    • 0036261650 scopus 로고    scopus 로고
    • Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation
    • HOPPE, G. J., J. C. TANNY, A. D. RUDNER, S. A. GERBER, S. DANAIE et al., 2002 Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation. Mol. Cell. Biol. 22: 4167-4180.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 4167-4180
    • HOPPE, G.J.1    TANNY, J.C.2    RUDNER, A.D.3    GERBER, S.A.4    DANAIE, S.5
  • 11
    • 0030758377 scopus 로고    scopus 로고
    • The ubiquitin-conjugating enzyme Rad6 (Ubc2) is required for silencing in Saccharomyces cerevisiae
    • HUANG, H., A. KAHANA, D. E. GOTTSCHLING, L. PRAKASH and S. W. LIEBMAN, 1997 The ubiquitin-conjugating enzyme Rad6 (Ubc2) is required for silencing in Saccharomyces cerevisiae. Mol. Cell. Biol. 17: 6693-6699.
    • (1997) Mol. Cell. Biol , vol.17 , pp. 6693-6699
    • HUANG, H.1    KAHANA, A.2    GOTTSCHLING, D.E.3    PRAKASH, L.4    LIEBMAN, S.W.5
  • 12
    • 32544455270 scopus 로고    scopus 로고
    • Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary
    • JAMBUNATHAN, N., A. W. MARTINEZ, E. C. ROBERT, N. B. AGOCHUKWU, M. E. IBOS et al., 2005 Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary. Genetics 171: 913-922.
    • (2005) Genetics , vol.171 , pp. 913-922
    • JAMBUNATHAN, N.1    MARTINEZ, A.W.2    ROBERT, E.C.3    AGOCHUKWU, N.B.4    IBOS, M.E.5
  • 13
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • JENUWEIN, T., and C. D. ALLIS, 2001 Translating the histone code. Science 293: 1074-1080.
    • (2001) Science , vol.293 , pp. 1074-1080
    • JENUWEIN, T.1    ALLIS, C.D.2
  • 14
    • 29144468972 scopus 로고    scopus 로고
    • Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
    • JOSHI, A. A., and K. STRUHL, 2005 Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol. Cell 20: 971-978.
    • (2005) Mol. Cell , vol.20 , pp. 971-978
    • JOSHI, A.A.1    STRUHL, K.2
  • 15
    • 27744587302 scopus 로고    scopus 로고
    • Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
    • KEOGH, M. C., S. K. KURDISTANI, S. A. MORRIS, S.H. AHN, V. PODOLNY et al., 2005 Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123: 593-605.
    • (2005) Cell , vol.123 , pp. 593-605
    • KEOGH, M.C.1    KURDISTANI, S.K.2    MORRIS, S.A.3    AHN, S.H.4    PODOLNY, V.5
  • 16
    • 0036843170 scopus 로고    scopus 로고
    • Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing
    • KIMURA, A., T. UMEHARA and M. HORIKOSHI, 2002 Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing. Nat. Genet. 32: 370-377.
    • (2002) Nat. Genet , vol.32 , pp. 370-377
    • KIMURA, A.1    UMEHARA, T.2    HORIKOSHI, M.3
  • 18
    • 0037979272 scopus 로고    scopus 로고
    • Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
    • KROGAN, N. J., M. KIM, A. TONG, A. GOLSHANI, G. CAGNEY et al., 2003 Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol. Cell. Biol. 23: 4207-4218.
    • (2003) Mol. Cell. Biol , vol.23 , pp. 4207-4218
    • KROGAN, N.J.1    KIM, M.2    TONG, A.3    GOLSHANI, A.4    CAGNEY, G.5
  • 19
    • 0037131524 scopus 로고    scopus 로고
    • Setting the boundaries of chromatin domains and nuclear organization
    • LABRADOR, M., and V. G. CORCES, 2002 Setting the boundaries of chromatin domains and nuclear organization. Cell 111: 151-154.
    • (2002) Cell , vol.111 , pp. 151-154
    • LABRADOR, M.1    CORCES, V.G.2
  • 20
    • 0037163016 scopus 로고    scopus 로고
    • Disruptor of telomeric silencing-1 is a chromatin-specific histone H3 methyltransferase
    • LACOSTE, N., R. T. UTLEY, J. M. HUNTER, G. G. POIRIER and J. COTE, 2002 Disruptor of telomeric silencing-1 is a chromatin-specific histone H3 methyltransferase. J. Biol. Chem. 277: 30421-30424.
    • (2002) J. Biol. Chem , vol.277 , pp. 30421-30424
    • LACOSTE, N.1    UTLEY, R.T.2    HUNTER, J.M.3    POIRIER, G.G.4    COTE, J.5
  • 21
    • 0037512273 scopus 로고    scopus 로고
    • LI, B., L. HOWE, S. ANDERSON, J. R. YATES, 3RD and J. L. WORKMAN, 2003 The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem. 278: 8897-8903.
    • LI, B., L. HOWE, S. ANDERSON, J. R. YATES, 3RD and J. L. WORKMAN, 2003 The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem. 278: 8897-8903.
  • 22
    • 0037147121 scopus 로고    scopus 로고
    • Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation
    • LI, J., D. MOAZED and S. P. GYGI, 2002 Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation. J. Biol. Chem. 277: 49383-49388.
    • (2002) J. Biol. Chem , vol.277 , pp. 49383-49388
    • LI, J.1    MOAZED, D.2    GYGI, S.P.3
  • 23
    • 0037097940 scopus 로고    scopus 로고
    • Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast
    • LUO, K., M. A. VEGA-PALAS and M. GRUNSTEIN, 2002 Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast. Genes Dev. 16: 1528-1539.
    • (2002) Genes Dev , vol.16 , pp. 1528-1539
    • LUO, K.1    VEGA-PALAS, M.A.2    GRUNSTEIN, M.3
  • 24
    • 0037423930 scopus 로고    scopus 로고
    • Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin
    • MENEGHINI, M. D., M. WU and H. D. MADHANI, 2003 Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell 112: 725-736.
    • (2003) Cell , vol.112 , pp. 725-736
    • MENEGHINI, M.D.1    WU, M.2    MADHANI, H.D.3
  • 25
    • 0034791301 scopus 로고    scopus 로고
    • Common themes in mechanisms of gene silencing
    • MOAZED, D., 2001 Common themes in mechanisms of gene silencing. Mol. Cell 8: 489-498.
    • (2001) Mol. Cell , vol.8 , pp. 489-498
    • MOAZED, D.1
  • 26
    • 1342346506 scopus 로고    scopus 로고
    • Barrier proteins remodel and modify chromatin to restrict silenced domains
    • OKI, M., L. VALENZUELA, T. CHIBA, T. ITO and R. T. KAMAKAKA, 2004 Barrier proteins remodel and modify chromatin to restrict silenced domains. Mol. Cell. Biol. 24: 1956-1967.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 1956-1967
    • OKI, M.1    VALENZUELA, L.2    CHIBA, T.3    ITO, T.4    KAMAKAKA, R.T.5
  • 28
    • 23944462969 scopus 로고    scopus 로고
    • Genome-wide map of nucleosome acetylation and methylation in yeast
    • POKHOLOK, D. K., C. T. HARBISON, S. LEVINE, M. COLE, N. M. HANNETT et al., 2005 Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527.
    • (2005) Cell , vol.122 , pp. 517-527
    • POKHOLOK, D.K.1    HARBISON, C.T.2    LEVINE, S.3    COLE, M.4    HANNETT, N.M.5
  • 29
    • 26844511498 scopus 로고    scopus 로고
    • Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin
    • RAISNER, R. M., P. D. HARTLEY, M. D. MENEGHINI, M. Z. BAO, C. L. LIU et al., 2005 Histone variant H2A.Z marks the 5′ ends of both active and inactive genes in euchromatin. Cell 123: 233-248.
    • (2005) Cell , vol.123 , pp. 233-248
    • RAISNER, R.M.1    HARTLEY, P.D.2    MENEGHINI, M.D.3    BAO, M.Z.4    LIU, C.L.5
  • 30
    • 27144458417 scopus 로고    scopus 로고
    • Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide
    • RAO, B., Y. SHIBATA, B. D. STRAHL and J. D. LIEB, 2005 Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Mol. Cell. Biol. 25: 9447-9459.
    • (2005) Mol. Cell. Biol , vol.25 , pp. 9447-9459
    • RAO, B.1    SHIBATA, Y.2    STRAHL, B.D.3    LIEB, J.D.4
  • 31
    • 0037599617 scopus 로고    scopus 로고
    • NSD1 is essential for early post-implantation development and has a catalytically active SET domain
    • RAYASAM, G. V., O. WENDLING, P. O. ANGRAND, M. MARK, K. NIEDERREITHER et al., 2003 NSD1 is essential for early post-implantation development and has a catalytically active SET domain. EMBO J. 22: 3153-3163.
    • (2003) EMBO J , vol.22 , pp. 3153-3163
    • RAYASAM, G.V.1    WENDLING, O.2    ANGRAND, P.O.3    MARK, M.4    NIEDERREITHER, K.5
  • 32
    • 0036324497 scopus 로고    scopus 로고
    • Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae
    • RUSCHE, L. N., A. L. KIRCHMAIER and J. RINE, 2002 Ordered nucleation and spreading of silenced chromatin in Saccharomyces cerevisiae. Mol. Biol. Cell 13: 2207-2222.
    • (2002) Mol. Biol. Cell , vol.13 , pp. 2207-2222
    • RUSCHE, L.N.1    KIRCHMAIER, A.L.2    RINE, J.3
  • 33
    • 0033786367 scopus 로고    scopus 로고
    • Role for the silencing protein Dot1 in meiotic checkpoint control
    • SAN-SEGUNDO, P. A., and G. S. ROEDER, 2000 Role for the silencing protein Dot1 in meiotic checkpoint control. Mol. Biol. Cell 11: 3601-3615.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 3601-3615
    • SAN-SEGUNDO, P.A.1    ROEDER, G.S.2
  • 34
    • 9144253287 scopus 로고    scopus 로고
    • Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin
    • SANTOS-ROSA, H., A. J. BANNISTER, P. M. DEHE, V. GELI and T. KOUZARIDES, 2004 Methylation of H3 lysine 4 at euchromatin promotes Sir3p association with heterochromatin. J. Biol. Chem. 279: 47506-47512.
    • (2004) J. Biol. Chem , vol.279 , pp. 47506-47512
    • SANTOS-ROSA, H.1    BANNISTER, A.J.2    DEHE, P.M.3    GELI, V.4    KOUZARIDES, T.5
  • 35
    • 0038719825 scopus 로고    scopus 로고
    • The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation
    • SCHAFT, D., A. ROGUEV, K. M. KOTOVIC, A. SHEVCHENKO, M. SAROV et al., 2003 The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation. Nucleic Acids Res. 31: 2475-2482.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2475-2482
    • SCHAFT, D.1    ROGUEV, A.2    KOTOVIC, K.M.3    SHEVCHENKO, A.4    SAROV, M.5
  • 36
    • 0036683308 scopus 로고    scopus 로고
    • Unsafe SETs: Histone lysine methyltransferases and cancer
    • SCHNEIDER, R., A. J. BANNISTER and T. KOUZARIDES, 2002 Unsafe SETs: histone lysine methyltransferases and cancer. Trends Biochem. Sci. 27: 396-402.
    • (2002) Trends Biochem. Sci , vol.27 , pp. 396-402
    • SCHNEIDER, R.1    BANNISTER, A.J.2    KOUZARIDES, T.3
  • 37
    • 0022647177 scopus 로고
    • A position effect on the expression of a tRNA gene mediated by the SIR genes in Saccharomyces cerevisiae
    • SCHNELL, R., and J. RINE, 1986 A position effect on the expression of a tRNA gene mediated by the SIR genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 6: 494-501.
    • (1986) Mol. Cell. Biol , vol.6 , pp. 494-501
    • SCHNELL, R.1    RINE, J.2
  • 39
    • 0036170767 scopus 로고    scopus 로고
    • Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression
    • STRAHL, B. D., P. A. GRANT, S. D. BRIGGS, Z. W. SUN, J. R. BONE et al., 2002 Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Mol. Cell. Biol. 22: 1298-1306.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 1298-1306
    • STRAHL, B.D.1    GRANT, P.A.2    BRIGGS, S.D.3    SUN, Z.W.4    BONE, J.R.5
  • 40
    • 0036842129 scopus 로고    scopus 로고
    • Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin
    • SUKA, N., K. LUO and M. GRUNSTEIN, 2002 Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin. Nat. Genet. 32: 378-383.
    • (2002) Nat. Genet , vol.32 , pp. 378-383
    • SUKA, N.1    LUO, K.2    GRUNSTEIN, M.3
  • 41
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • TUSHER, V. G., R. TIBSHIRANI and G. CHU, 2001 Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98: 5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • TUSHER, V.G.1    TIBSHIRANI, R.2    CHU, G.3
  • 42
    • 0037077178 scopus 로고    scopus 로고
    • Dot1p modulates silencing in yeast by methylation of the nucleosome core
    • VAN LEEUWEN, F., P. R. GAFKEN and D. E. GOTTSCHLING, 2002 Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell 109: 745-756.
    • (2002) Cell , vol.109 , pp. 745-756
    • VAN LEEUWEN, F.1    GAFKEN, P.R.2    GOTTSCHLING, D.E.3
  • 43
    • 0037336041 scopus 로고    scopus 로고
    • Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
    • XIAO, T., H. HALL, K. O. KIZER, Y. SHIBATA, M. C. HALL et al., 2003 Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev. 17: 654-663.
    • (2003) Genes Dev , vol.17 , pp. 654-663
    • XIAO, T.1    HALL, H.2    KIZER, K.O.3    SHIBATA, Y.4    HALL, M.C.5
  • 44
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • ZHANG, H., D. N. ROBERTS and B. R. CAIRNS, 2005 Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123: 219-231.
    • (2005) Cell , vol.123 , pp. 219-231
    • ZHANG, H.1    ROBERTS, D.N.2    CAIRNS, B.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.