Tagging SNPs in non-homologous end-joining pathway genes and risk of glioma

Carcinogenesis

Volumn 28, Issue 9, 2007, Pages 1906-1913

  Liu, Yanhong ^a   Zhang, Haishi ^b   Zhou, Keke ^b   Chen, Lina ^c   Xu, Zhonghui ^a   Zhong, Yu ^a   Liu, Hongliang ^a   Li, Rui ^a   Shugart, Yin Yao ^c,d   Wei, Qingyi ^e   Jin, Li ^a   Huang, Fengping ^b   Lu, Daru ^a   Zhou, Liangfu ^b  

^a FUDAN UNIVERSITY   (China)

^b FUDAN UNIVERSITY   (China)

^c UNIVERSITY OF BRISTOL   (United Kingdom)

^d JOHNS HOPKINS UNIVERSITY   (United States)

^e UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ADULT; ARTICLE; CANCER RISK; CANCER SUSCEPTIBILITY; CHILD; CONTROLLED STUDY; DNA REPAIR; DNA STRAND BREAKAGE; FEMALE; GENE INTERACTION; GENETIC ANALYSIS; GENETIC RISK; GENETIC VARIABILITY; GLIOMA; HAPLOTYPE; HUMAN; MAJOR CLINICAL STUDY; MALE; PRIORITY JOURNAL; RISK ASSESSMENT; RISK FACTOR; RISK REDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM;

1-PHOSPHATIDYLINOSITOL 3-KINASE; BRAIN NEOPLASMS; CENTRAL NERVOUS SYSTEM NEOPLASMS; CHROMOSOME MAPPING; DNA DAMAGE; DNA HELICASES; DNA REPAIR; GENOTYPE; GLIOMA; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; RISK FACTORS;

EID: 34247511318     PISSN: 01433334     EISSN: 14602180     Source Type: Journal    
DOI: 10.1093/carcin/bgm073     Document Type: Article

References (41)

1. Parkin,D.M. et al. (2002) Cancer Incidence in Five Continents IARC Press, Lyon.
2. Kleihues,P. et al. (2000) Pathology and Genetics of Tumors of the Nervous System. IARC Press, Lyon.
3. Little,M.P. et al. (1998) Risks of brain tumour following treatment for cancer in childhood: Modification by genetic factors, radiotherapy and chemotherapy. Int. J. Cancer, 78, 269-275.
4. Bondy,M.L. et al. (2001) Gamma-radiation sensitivity and risk of glioma. J. Natl. Cancer Inst., 93, 1553-1557.
5. Neglia,J.P. et al. (2006) New primary neoplasms of the central nervous system in survivors of childhood cancer: A report from the childhood cancer survivor study. J. Natl. Cancer Inst., 98, 1528-1537.
6. Morgan,W.F. et al. (1998) DNA double-strand breaks, chromosomal rearrangements, and genomic instability. Mutat. Res., 404, 125-128.
7. Khanna,K.K. et al. (2001) DNA double-strand breaks: Signaling, repair and the cancer connection. Nat. Genet., 27, 247-254.
8. Lieber,M.R. et al. (2003) Mechanism and regulation of human non-homologous DNA end-joining. Nat. Rev. Mol. Cell Biol., 4 712-720.
9. Thacker,J. (1999) The role of homologous recombination processes in the repair of severe forms of DNA damage in mammalian cells. Biochimie 81, 77-85.
10. Hartley,K.O. et al. (1995) DNA-dependent protein kinase catalytic subunit: A relative of phosphatidylinositol 3-kinase and the ataxia telangiectasia gene product. Cell, 82, 849-856.
11. Ferguson,D.O. et al. (2000) The nonhomologous end-joining pathway of DNA repair is required for genomic stability and the suppression of translocations. Proc. Natl. Acad. Sci. USA, 97, 6630-6633.
12. Singleton,B.K. et al. (1997) Molecular and biochemical characterisation of xrs mutants defective in Ku80. Mol. Cell. Biol. 17, 1264-1273.
13. Hsu,H.L. et al. (2000) Ku acts in a unique way at the mammalian telomere to prevent end joining. Genes Dev., 14, 2807-2812.
14. Auranen,A. et al. (2005) Polymorphisms in DNA repair genes and epithelial ovarian cancer risk. Int. J. Cancer, 117, 611-618.
15. Fu,Y.-P. et al. (2003) Breast cancer risk associated with genotypic polymorphism of the nonhomologous end-joining genes: A multigenic study on cancer susceptibility. Cancer Res., 63, 2440-2446.
16. Lee,K.-M. et al. (2005) Genetic polymorphisms of selected DNA repair genes, estrogen and progesterone receptor status, and breast cancer risk. Clin. Cancer Res., 11, 4620-4626.
17. Kuschel,B. et al. (2002) Variants in DNA double-stranded break repair genes and breast cancer susceptibility. Hum Mol. Genet., 11, 1399-1407.
18. Johnson,G.C.L. et al. (2001) Haplotype tagging for the identification of common disease genes. Nat. Genet., 29, 233-237.
19. Daly,M.J. et al. (2001) High-resolution haplotype structure in the human genome. Nat. Genet., 29, 229-232.
20. Gabriel,S.B. et al. (2002) The structure of haplotype blocks in the human genome. Science, 296, 2225-2229.
21. Zhang,K. et al. (2002) A dynamic programming algorithm for haplotype block partitioning. Proc. Natl. Acad. Sci. USA, 99 7335-7339.
22. Carlson,C.S. et al. (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am. J. Hum. Genet., 74, 106-120.
23. Akaike,H. (1974) A new look at the statistical model identification. IEEE Trans. Automat. Contr., 19, 716-723.
24. Schneider,S. et al. (2000) Arlequin Ver. 2.000: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Geneva.
25. Schaid,D.J. et al. (2002) Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am. J. Hum. Genet., 70, 425-434.
26. Ritchie,M.D. et al. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am. J. Hum. Genet., 69, 138-147.
27. Moore,J.H. et al. (2002) New strategies for identifying gene-gene interactions in hypertension. Ann. Med., 34, 88-95.
28. Hahn,L.W. et al. (2003) Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics, 19, 376-382.
29. Chen,D.J. et al. (1994) Regional assignment of a human DNA repair gene (XRCC5) to 2q35 by x-ray hybrid mapping. Genomics, 21, 423-427.
30. Wang,L.-E. et al. (2004) Polymorphisms of DNA repair genes and risk of glioma. Cancer Res., 64, 5560-5563.
31. Hirata,H. et al. (2006) Polymorphisms of DNA repair genes are associated with renal cell carcinoma. Biochem. Biophys. Res. Commun. 342, 1058-1062.
32. Chen,P. et al. (2000) Association of an ERCC1 polymorphism with adult-onset glioma. Cancer Epidemiol. Biomarkers Prev., 9, 843-847.
33. Parhar,P. et al. (2005) Possible association of p53 codon 72 polymorphism with susceptibility to adult and pediatric high-grade astrocytomas. Mol. Brain Res., 137, 98-103.
34. Yang,P. et al. (2005) Polymorphisms in GLTSCR1 and ERCC2 are associated with the development of oligodendrogliomas. Cancer, 103, 2363-2372.
35. Peters,E.S. et al. (2001) NAT2 and NQO1 polymorphisms am not associated with adult glioma. Cancer Epidemiol. Biomarkers Prev., 10, 151-152.
36. Inoue,R. et al. (2003) A genotype of the polymorphic DNA repair gene MGMT is associated with de novo glioblastoma. Neurol. Res., 25, 875-879.
37. Benjamini,Y. et al. (1995) Controlling the false-discovery rate: A practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B, 57, 289-300.
38. Rothman,K.J. (1990) No adjustments are needed for multiple comparisons: Epidemiology, 1, 43-46.
39. Perneger,T.V. (1998) What's wrong with Bonferroni adjustments. Br. Med. J., 316, 1236-1238.
40. Millikan,R.C. et al. (2005) Polymorphisms in DNA repair genes, medical exposure to ionizing radiation, and breast cancer risk. Cancer Epidemiol. Biomarkers Prev., 14, 2326-2334.
41. Sadetzki,S. et al. (2005) Genotyping of patients with sporadic and radiation-associated meningiomas. Cancer Epidemiol. Biomarkers Prev. 14, 969-976.