Genotypic characterization of Bradyrhizobium strains nodulating small senegalese legumes by 16S-23S rRNA intergenic gene spacers and amplified fragment length polymorphism fingerprint analyses

Applied and Environmental Microbiology

Volumn 66, Issue 9, 2000, Pages 3987-3997

  Doignon Bourcier, F ^a   Willems, A ^a   Coopman, R ^a   Laguerre, G ^a   Gillis, M ^a   De Lajudie, P ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ARTICLE; BRADYRHIZOBIUM; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOIL MICROFLORA; STRAIN DIFFERENCE;

BACTERIAL TYPING TECHNIQUES; BRADYRHIZOBIUM; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, INTERGENIC; DNA, RIBOSOMAL; FABACEAE; GENOTYPE; PLANTS, MEDICINAL; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; SENEGAL;

ABRUS; ALYSICARPUS; BACTERIA (MICROORGANISMS); BRADYRHIZOBIUM; BRYASPIS; CASSIA; CHAMAECRISTA; CHAMAECRISTA FASCICULATA FASCICULATA; CROTALARIA; DESMODIUM; ERIOSEMA; FABACEAE; INDIGOFERA; MOGHANIA; NEGIBACTERIA; RHYNCHOSIA; SESBANIA; TEPHROSIA; ZORNIA;

EID: 0033831427     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.9.3987-3997.2000     Document Type: Article

References (46)

1. Stem and root nodulation in Aeschynomene spp
2. Biodiversity of bradyrhizobia nodulating Lupinus spp
3. The 16s/23s ribosomal spacer region as a target for DNA probes to identify eubacteria
4. Amplified fragment length polymorphism (AFLP): A review of the procedure and its applications
5. Comparison of nucleotide diversity and symbiotic properties of Rhizobium meliloti populations from annual Medicago species
6. Comparison of randomly amplified polymorphic DNA with amplified fragment length polymorphism to assess genetic diversity and genetic relatedness within genospecies III of Pseudomonas syringae
7. Description of Allorhizobium undicola gen. nov. sp. nov. for nitrogen-fixing bacteria efficiently nodulating Neptunia natans in Senegal
8. Diversity of bradyrhizobia from 27 tropical leguminosae species native of Senegal
9. Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida
10. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
11. Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
12. DNA:DNA hybridization studies of Rhizobium japonicum and related Rhizobiaceae
13. Genotypic diversity among Aeromonas isolates recovered from drinking water production plants as revealed by AFLP(TM) analysis
14. Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy
15. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
16. Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. nov., a genus of slow growing root nodule bacteria from leguminous plants
17. Genetic diversity and phylogeny of rhizobia that nodulate Acacia spp. in Morocco assessed by analysis of rRNA genes
18. Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov.
19. Numerical taxonomy of photosynthetic rhizobia nodulating Aeschynomene species
20. Rapid identification of rhizobia by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
21. Typing of rhizobia by PCR DNA fingerprinting and PCR-restriction fragment length polymorphism analysis of chromosomal and symbiotic gene regions: Application to Rhizobium leguminosarum and its different biovars
22. 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny
23. Rhizobium phylogenies and bacterial genetic diversity
24. Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group
25. Characterization of rhizobia from different divergence groups of tropical Leguminosae by comparative polyacrylamide gel electrophoresis of their total proteins
26. Biodiversity of rhizobia isolated from a wide range of forest legumes in Brazil
27. Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer
28. Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions
29. DNA homology between species of the rhizobia
30. Characterization of Rhizobium 'hedysari' by RFLP analysis of PCR amplified rDNA and by genomic PCR fingerprinting
31. Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia on the basis of fatty acid and rRNA analyses
32. Phylogeny of Rhizobium galegae with respect to other rhizobia and agrobacteria
33. Genetic and phenotypic analyses of Bradyrhizobium strains nodulating Peanut (Arachis hypogaea L.) roots
34. Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms
35. Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR-restriction fragment length polymorphism analysis of genes encoding 16S rRNA (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic PCR genomic fingerprinting, and partial 16S rDNA sequencing
36. AFLP: A new technique for DNA fingerprinting
37. Phylogenetic analysis of rhizobia and agrobacteria based on 16S rRNA gene sequences
38. AFLP fingerprint analysis of Bradyrhizobium strains isolated from Faidherbia albida and Aeschynomene species
39. Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions
40. Bradyrhizobium liaoningense sp. nov. isolated from the root nodules of soybean
41. Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16s rRNA gene using PCR and DNA sequencer
42. Diversity and phylogeny of rhizobia
43. Phylogeny of the phototrophic Rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment