Myriapod monophyly and relationships among myriapod classes based on nearly complete 28S and 18S rDNA sequences

Zoological Science

Volumn 23, Issue 12, 2006, Pages 1101-1108

  Gai, Yong Hua ^a   Song, Da Xiang ^a,b   Sun, Hong Ying ^a   Zhou, Kai Ya ^a  

^a NANJING NORMAL UNIVERSITY   (China)

^b HEBEI UNIVERSITY   (China)

Author keywords

18S; 28S; Monophyly; Myriapoda; Phylogeny

Indexed keywords

RNA 18S; RNA 28S;

ANIMAL; ARTHROPOD; ARTICLE; CLASSIFICATION; DNA BASE COMPOSITION; GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALS; ARTHROPODS; BASE COMPOSITION; BASE SEQUENCE; PHYLOGENY; RNA, RIBOSOMAL, 18S; RNA, RIBOSOMAL, 28S;

ARTHROPODA; CHILOPODA; DIPLOPODA; MYRIAPODA; PAUROPODA; SYMPHYLA;

EID: 34147157163     PISSN: 02890003     EISSN: 02890003     Source Type: Journal    
DOI: 10.2108/zsj.23.1101     Document Type: Article

References (64)

1. Averof M, Akam M (1995) Hox genes and the diversification of insect and crustacean body plans. Nature 376: 420-423
2. Boore JL, Lavrov DV, Brown WM (1998) Gene translocation links insects and crustaceans. Nature 392: 667-668
3. Boudreaux HB (1979) Arthropod Phylogeny with Special Reference to Insects. John Wiley and Sons, New York
4. Carapelli A, Nardi F, Dallai R, Boore JL, Lio P, Frati F (2005) Relationships between hexapods and crustaceans based on four mitochondrial genes. Crustac Issues 16: 295-306
5. Cook CE, Smith ML, Telford MJ, Bastianello A, Akam M (2001) Hox genes and the phylogeny of the arthropods. Curr Biol 11: 759-763
6. Cunningham CW, Zhu H, Hillis DM (1998) Best-fit maximum likelihood models for phylogenetic inference: empirical tests with known phylogenies. Evolution 52: 978-987
7. Delsuc F, Phillips MJ, Penny D (2003) Comment on "Hexapod origins: monophyletic or paraphyletic?" Science 301: 1482
8. Deutsch JS (2001) Are Hexapoda members of the Crustacea? Evidence from comparative developmental genetics. Ann Soc Entomol Fr 37:41-49
9. Dohle W (1974) The origin and inter-relations of the myriapod groups. Symp Zool Soc Lond 32: 191-198
10. Dohle W (1980) Sind die Myriapoden eine monophyletiche Gruppe? Eine Diskussion der Verwandtschaftsbeziehungen der Antennaten. Abh naturwiss Ver Hamburg 23: 45-104
11. Dohle W (1997) Are the insects more closely related to the crustaceans than to the myriapods? Ent Scand Suppl 51: 7-16
12. Dohle W (1998) Myriapod-insect relationships as opposed to an insect-crustacean sister group relationship. In "Arthropod Relationships" Ed by RA Fortey, RH Thomas, Chapman and Hall, London, pp 305-315
13. Dohle W (2001) Are the insects terrestrial crustaceans? A discussion of some new facts and arguments and the proposal of the proper name "Tetraconata" for the monophyletic unit Crustacea + Hexapoda. Ann Soc Entomol Fr 37: 85-103
14. Duman-Scheel M, Patel NH (1999) Analysis of molecular marker expression reveals neuronal homology in distantly related arthropods. Development 126: 2327-2334
15. Edgecombe GD (2004) Morphological data, extant Myriapoda, and the myriapod stem-group. Contrib Zool 73: 207-252
16. Edgecombe GD, Giribet G (2002) Myriapod phylogeny and the relationships of Chilopoda. In "Biodiversidad, Taxonomia y Biogeografia de Artrópodos de México: Hacia una Síntesis de su Conocimiento" Ed by JE Bousquets, JJ Morrone, H Ponce Ulloa, Prensas de Ciencias, Universidad Nacional Autómoma de México, Mexico DF, pp 143-168
17. Enghoff H, Dohle W, Blower JG (1993) Anamorphosis in millipedes (Diplopoda) - The present state of knowledge with some developmental and phylogenetic considerations. Zool J Linn Soc 109: 103-234
18. Farris JS, Källersjö M, Kluge AG, Bult C (1994) Testing significance of incongruence. Cladistics 10: 315-319
19. Friedrich M, Tautz D (1995) Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods. Nature 376: 165-167
20. Giribet G (2002) Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian explosion? Mol Phylogenet Evol 24: 345-357
21. Giribet G, Ribera C (1998) The position of arthropods in the animal kingdom: a search for a reliable outgroup for internal arthropod phylogeny. Mol Phylogenet Evol 9: 481-488
22. Giribet G, Ribera C (2000) A review of arthropod phylogeny: new data based on ribosomal DNA sequences and direct character optimization. Cladistics 16: 204-231
23. Giribet G, Wheeler WC (2001) Some unusual small-subunit ribosomal RNA sequences of metazoans. Am Mus Novitat 3337: 1-14
24. Giribet G, Carranza S, Baguñà J, Riutort M, Ribera C (1996) First molecular evidence for the existence of a Tardigrada + Arthropoda clade. Mol Biol Evol 13: 76-84
25. Giribet G, Edgecombe GD, Wheeler WC (2001) Arthropod phylogeny based on eight molecular loci and morphology. Nature 413: 157-161
26. Gloor GB, Preston CR, Johnson-Schlitz DM, Nassif NA, Phillis RW, Benz WK, Robertson HM, Engels WR (1993) Type I repressors of P element mobility. Genetics 135: 81-95
27. Gutell RR (1994) Collection of small subunit (16S- and 16S-like) ribosomal RNA structures. Nucleic Acids Res 22: 3502-3507
28. Hassanin A (2006) Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol Phylogenet Evol 38: 100-116
29. Hassouna N, Michot B, Bachellerie JP (1984) The complete nucleotide sequence of mouse 28S rRNA gene: implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res 12: 3563-3583
30. Hendriks L, Van Broeckhoven C, Vandenberghe A, Van de Peer Y, De Wachter R (1988) Primary and secondary structure of the 18S ribosomal RNA of the bird spider Eurypelma californica and evolutionary relationships among eukaryotic phyla. Eur J Biochem 177:15-20
31. Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755
32. Hwang UW, Friedrich M, Tautz D, Park CJ, Kim W (2001) Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 413: 154-157
33. Jermin LS, Ho SYW, Ababneh F, Robinson J, Larkum AWD (2004) The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated. Syst Biol 53: 638-643
34. Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of Hominoidea. J Mol Evol 29: 170-179
35. Koch M (2003) Monophyly of the Myriapoda? Reliability of current arguments. Afr Invert 44: 137-153
36. Kraus O (1998) Phylogenetic relationships between higher taxa of tracheate arthropods. In "Arthropod Relationships" Ed by RA Fortey, RH Thomas, Chapman and Hall, London, pp 295-303
37. Kraus O (2001) "Myriapoda" and the ancestry of the Hexapoda. Ann Soc Entomol Fr (N.S.) 37: 105-127
38. Kraus O, Kraus M (1994) Phylogenetic system of the Tracheata (Mandibulata): on "Myriapoda": Insecta interrelationships, phylogenetic age and primary ecological niches. Verh Naturwiss Ver Hamburg 34: 5-31
39. Kraus O, Kraus M (1996) On myriapod/insect interrelationships. Mém Mus Nat Hist Natl 169: 283-290
40. Luan YX, Mallatt JM, Xie RD, Yang YM, Yin WY (2005) The phylogenetic positions of three basal-hexapod groups (Protura, Diplura, and Collembola) based on ribosomal RNA gene sequences. Mol Biol Evol 22:1579-1592
41. Mallatt J, Sullivan J (1998) 28S and 18S rDNA sequences support the monophyly of lampreys and hagfishes. Mol Biol Evol 15: 1706-1718
42. Mallatt JM, Garey JR, Shultz JW (2004) Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol Phylogenet Evol 31: 178-191
43. Negrisolo E, Minelli A, Valle G (2004) The mitochondrial genome of the house centipede Scutigera and the monophyly versus paraphyly of myriapods. Mol Biol Evol 21: 770-780
44. Panganiban G, Sebring A, Nagy L, Carroll S (1995) The development of crustacean limbs and the evolution of arthropods. Science 270: 1363-1366
45. Petrov NB, Vladychenskaya NS (2005) Phylogeny of molting protostomes (Ecdysozoa) as inferred from 18S and 28S rRNA gene sequences. Mol Biol 39: 503-513
46. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818
47. Regier JC, Shultz JW (1997) Molecular phylogeny of the major arthropod groups indicates polyphyly of crustaceans and a new hypothesis for the origin of hexapods. Mol Biol Evol 14: 902-913
48. Regier JC, Shultz JW (2001) A phylogenetic analysis of Myriapoda (Arthropoda) using two nuclear protein-encoding genes. Zool J Linn Soc 132:469-486
49. Regier JC, Wilson HM, Shultz JW (2005) Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes. Mol Phylogenet Evol 34: 147-158
50. Sambrook JE, Fitch F, Maniatis T (1989) Molecular Cloning, A Laboratory Manual. 2nd ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor
51. Schnare MN, Damberger SH, Gray MW, Gutell RR (1996) Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA. J Mol Biol 256:701-719
52. Sharov AG (1966) Basic Arthropodan Stock with Special Reference to Insects. Pergamon Press, Oxford
53. Shultz JW, Regier JC (2000) Phylogenetic analysis of arthropods using two nuclear protein-encoding genes supports a crustacean + hexapod clade. Proc R Soc London B 267: 1011-1019
54. Simpson P (2001) A review of early development of the nervous system in some arthropods: comparison between insects, crustaceans and myriapods. Ann Soc Entomol Fr 37: 71-84
55. Snodgrass RE (1938) Evolution of the Annelida, Onychophora and Arthropoda. Smithson Misc Coll 97: 1-159
56. Sullivan J, Swofford DL (2001) Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated? Syst Biol 50: 723-729
57. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b10. Sinauer Associates, Sunderland, Mass
58. Swofford DL, Waddell PJ, Huelsenbeck JP, Foster PG, Lewis PO, Rogers JS (2001) Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst Biol 50: 525-539
59. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882
60. Tiegs OW (1947) The development and affinities of the Pauropoda, based on a study of Pauropus silvaticus. Quart J Microsc Sci 88: 165-336
61. Van der Auwera G, Chapelle S, De Wachter R (1994) Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phytogeny of the oomycetes. FEBS Lett 338: 133-136
62. Wheeler WC (1998) Molecular systematics and arthropods. In "Arthropod Fossils and Phylogeny" Ed by GD Edgecombe, Columbia University Press, New York, pp 9-32
63. Wheeler WC, Cartwright P, Hayashi CY (1993) Arthropod phylogeny: a combined approach. Cladistics 9: 1-39
64. Winchell CJ, Sullivan J, Cameron CB, Swalla BJ, Mallatt J (2002) Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol Biol Evol 19: 762-776