-
1
-
-
0014868212
-
Circular R-factor molecules controlling penicillinase synthesis, replicating in Escherichia coli under relaxed or stringent control
-
Kontomichalou P., Mitani M., and Clowes R.C. Circular R-factor molecules controlling penicillinase synthesis, replicating in Escherichia coli under relaxed or stringent control. J. Bacteriol. 104 (1970) 34-44
-
(1970)
J. Bacteriol.
, vol.104
, pp. 34-44
-
-
Kontomichalou, P.1
Mitani, M.2
Clowes, R.C.3
-
2
-
-
4344679790
-
Participating elements in the replication of iteron-containing plasmids (ICPs)
-
Funnell B.E., and Phillips G.J. (Eds), ASM Press, Washington, DC
-
Krüger R., Rakowski S.A., and Filutowicz M. Participating elements in the replication of iteron-containing plasmids (ICPs). In: Funnell B.E., and Phillips G.J. (Eds). Plasmid Biology (2004), ASM Press, Washington, DC 25-45
-
(2004)
Plasmid Biology
, pp. 25-45
-
-
Krüger, R.1
Rakowski, S.A.2
Filutowicz, M.3
-
3
-
-
0018351589
-
Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K
-
Stalker D.M., Kolter R., and Helinski D.R. Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6K. Proc. Natl Acad. Sci. USA 76 (1979) 1150-1154
-
(1979)
Proc. Natl Acad. Sci. USA
, vol.76
, pp. 1150-1154
-
-
Stalker, D.M.1
Kolter, R.2
Helinski, D.R.3
-
4
-
-
0032475810
-
Replication of R6K γ origin in vitro: discrete start sites for DNA synthesis dependent on π and its copy-up variants
-
Chen D., Feng J., Krüger R., Urh M., Inman R.B., and Filutowicz M. Replication of R6K γ origin in vitro: discrete start sites for DNA synthesis dependent on π and its copy-up variants. J. Mol. Biol. 282 (1998) 775-787
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 775-787
-
-
Chen, D.1
Feng, J.2
Krüger, R.3
Urh, M.4
Inman, R.B.5
Filutowicz, M.6
-
5
-
-
0022868961
-
Positive and negative roles of an initiator protein at an origin of replication
-
Filutowicz M., McEachern M.J., and Helinski D.R. Positive and negative roles of an initiator protein at an origin of replication. Proc. Natl Acad. Sci. USA 83 (1986) 9645-9649
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 9645-9649
-
-
Filutowicz, M.1
McEachern, M.J.2
Helinski, D.R.3
-
6
-
-
0032582789
-
Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfaces
-
Urh M., Wu J., Forest K., Inman R.B., and Filutowicz M. Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfaces. J. Mol. Biol. 283 (1998) 619-631
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 619-631
-
-
Urh, M.1
Wu, J.2
Forest, K.3
Inman, R.B.4
Filutowicz, M.5
-
7
-
-
0031443658
-
Two forms of replication initiator protein: positive and negative controls
-
Wu J., Sektas M., Chen D., and Filutowicz M. Two forms of replication initiator protein: positive and negative controls. Proc. Natl Acad. Sci. USA 94 (1997) 13967-13972
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 13967-13972
-
-
Wu, J.1
Sektas, M.2
Chen, D.3
Filutowicz, M.4
-
8
-
-
0035830971
-
Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication origin
-
Krüger R., Konieczny I., and Filutowicz M. Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication origin. J. Mol. Biol. 306 (2001) 945-955
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 945-955
-
-
Krüger, R.1
Konieczny, I.2
Filutowicz, M.3
-
9
-
-
1342282974
-
Biochemical investigations of control of replication initiation of plasmid R6K
-
Abhyankar M.M., Reddy J.M., Sharma R., Bullesbach E., and Bastia D. Biochemical investigations of control of replication initiation of plasmid R6K. J. Biol. Chem. 279 (2004) 6711-6719
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6711-6719
-
-
Abhyankar, M.M.1
Reddy, J.M.2
Sharma, R.3
Bullesbach, E.4
Bastia, D.5
-
10
-
-
7644239021
-
Origin pairing ('handcuffing') and unpairing in the control of P1 plasmid replication
-
Das N., and Chattoraj D.K. Origin pairing ('handcuffing') and unpairing in the control of P1 plasmid replication. Mol. Microbiol. 54 (2004) 836-849
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 836-849
-
-
Das, N.1
Chattoraj, D.K.2
-
11
-
-
0032479998
-
Protein domains and conformational changes in the activation of RepA, a DNA replication initiator
-
Giraldo R., Andreu J.M., and Díaz-Orejas R. Protein domains and conformational changes in the activation of RepA, a DNA replication initiator. EMBO J. 17 (1998) 4511-4526
-
(1998)
EMBO J.
, vol.17
, pp. 4511-4526
-
-
Giraldo, R.1
Andreu, J.M.2
Díaz-Orejas, R.3
-
12
-
-
4644371284
-
Binding modes of the initiator and inhibitor forms of the replication protein π to the γ ori iteron of plasmid R6K
-
Kunnimalaiyaan S., Krüger R., Ross W., Rakowski S.A., and Filutowicz M. Binding modes of the initiator and inhibitor forms of the replication protein π to the γ ori iteron of plasmid R6K. J. Biol. Chem. 279 (2004) 41058-41066
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 41058-41066
-
-
Kunnimalaiyaan, S.1
Krüger, R.2
Ross, W.3
Rakowski, S.A.4
Filutowicz, M.5
-
13
-
-
0028825297
-
Buffer composition mediates a switch between cooperative and independent binding of an initiator protein to DNA
-
Urh M., York D., and Filutowicz M. Buffer composition mediates a switch between cooperative and independent binding of an initiator protein to DNA. Gene 164 (1995) 1-7
-
(1995)
Gene
, vol.164
, pp. 1-7
-
-
Urh, M.1
York, D.2
Filutowicz, M.3
-
14
-
-
0028004129
-
Cooperative binding of initiator protein to replication origin conferred by single amino acid substitution
-
Filutowicz M., York D., and Levchenko I. Cooperative binding of initiator protein to replication origin conferred by single amino acid substitution. Nucl. Acids Res. 22 (1994) 4211-4215
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4211-4215
-
-
Filutowicz, M.1
York, D.2
Levchenko, I.3
-
15
-
-
0016361516
-
Actin is the naturally occurring inhibitor of deoxyribonuclease I
-
Lazarides E., and Lindberg U. Actin is the naturally occurring inhibitor of deoxyribonuclease I. Proc. Natl Acad. Sci. USA 71 (1974) 4742-4746
-
(1974)
Proc. Natl Acad. Sci. USA
, vol.71
, pp. 4742-4746
-
-
Lazarides, E.1
Lindberg, U.2
-
16
-
-
0029090166
-
A variant of lambda repressor with an altered pattern of cooperative binding to DNA sites
-
Astromoff A., and Ptashne M. A variant of lambda repressor with an altered pattern of cooperative binding to DNA sites. Proc. Natl Acad. Sci. USA 92 (1995) 8110-8114
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8110-8114
-
-
Astromoff, A.1
Ptashne, M.2
-
17
-
-
2642607009
-
Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2
-
Barbaric S., Munsterkotter M., Goding C., and Horz W. Cooperative Pho2-Pho4 interactions at the PHO5 promoter are critical for binding of Pho4 to UASp1 and for efficient transactivation by Pho4 at UASp2. Mol. Cell Biol. 18 (1998) 2629-2639
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 2629-2639
-
-
Barbaric, S.1
Munsterkotter, M.2
Goding, C.3
Horz, W.4
-
19
-
-
0028856072
-
The activation domain of GAL4 protein mediates cooperative promoter binding with general transcription factors in vivo
-
Vashee S., and Kodadek T. The activation domain of GAL4 protein mediates cooperative promoter binding with general transcription factors in vivo. Proc. Natl Acad. Sci. USA 92 (1995) 10683-10687
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10683-10687
-
-
Vashee, S.1
Kodadek, T.2
-
20
-
-
0032531831
-
Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo
-
Burz D.S., Rivera-Pomar R., Jackle H., and Hanes S.D. Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo. EMBO J 17 (1998) 5998-6009
-
(1998)
EMBO J
, vol.17
, pp. 5998-6009
-
-
Burz, D.S.1
Rivera-Pomar, R.2
Jackle, H.3
Hanes, S.D.4
-
21
-
-
0023575486
-
Plasmid incompatibility
-
Novick R.P. Plasmid incompatibility. Microbiol. Rev. 51 (1987) 381-395
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 381-395
-
-
Novick, R.P.1
-
22
-
-
7044250369
-
Direct repeats of nucleotide sequences are involved in plasmid replication and incompatability
-
Ray D.S. (Ed), Academic Press, New York
-
Stalker D.M., Shafferman A., Tolun A., Kolter R., Yang S., and Helinski D.R. Direct repeats of nucleotide sequences are involved in plasmid replication and incompatability. In: Ray D.S. (Ed). The Initiation of DNA Replication vol. 22 (1981), Academic Press, New York 113-124
-
(1981)
The Initiation of DNA Replication
, vol.22
, pp. 113-124
-
-
Stalker, D.M.1
Shafferman, A.2
Tolun, A.3
Kolter, R.4
Yang, S.5
Helinski, D.R.6
-
23
-
-
0029742634
-
Preponderance of Fis-binding sites in the R6K γ origin and the curious effect of the penicillin resistance marker on replication of this origin in the absence of Fis
-
(published erratum appears in J Bacteriol 1997 Apr;179(7):2464)
-
Wu F., Wu J., Ehley J., and Filutowicz M. Preponderance of Fis-binding sites in the R6K γ origin and the curious effect of the penicillin resistance marker on replication of this origin in the absence of Fis. J. Bacteriol. 178 (1996) 4965-4974 (published erratum appears in J Bacteriol 1997 Apr;179(7):2464)
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4965-4974
-
-
Wu, F.1
Wu, J.2
Ehley, J.3
Filutowicz, M.4
-
24
-
-
0037072480
-
Long CTG*CAG repeats from myotonic dystrophy are preferred sites for intermolecular recombination
-
Pluciennik A., Iyer R.R., Napierala M., Larson J.E., Filutowicz M., and Wells R.D. Long CTG*CAG repeats from myotonic dystrophy are preferred sites for intermolecular recombination. J. Biol. Chem. 277 (2002) 34074-34086
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34074-34086
-
-
Pluciennik, A.1
Iyer, R.R.2
Napierala, M.3
Larson, J.E.4
Filutowicz, M.5
Wells, R.D.6
-
25
-
-
0028121003
-
Cooperative DNA-protein interactions. Effects of changing the spacing between adjacent binding sites
-
Mao C., Carlson N.G., and Little J.W. Cooperative DNA-protein interactions. Effects of changing the spacing between adjacent binding sites. J. Mol. Biol. 235 (1994) 532-544
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 532-544
-
-
Mao, C.1
Carlson, N.G.2
Little, J.W.3
-
26
-
-
0343619345
-
Dimers of π protein bind the A+T-rich region of the R6K γ origin near the leading-strand synthesis start sites: regulatory implications
-
Krüger R., and Filutowicz M. Dimers of π protein bind the A+T-rich region of the R6K γ origin near the leading-strand synthesis start sites: regulatory implications. J. Bacteriol. 182 (2000) 2461-2467
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2461-2467
-
-
Krüger, R.1
Filutowicz, M.2
-
27
-
-
0021915343
-
Mutations in direct repeat sequences and in a conserved sequence adjacent to the repeats result in a defective replication origin in plasmid R6K
-
McEachern M.J., Filutowicz M., and Helinski D.R. Mutations in direct repeat sequences and in a conserved sequence adjacent to the repeats result in a defective replication origin in plasmid R6K. Proc. Natl Acad. Sci. USA 82 (1985) 1480-1484
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 1480-1484
-
-
McEachern, M.J.1
Filutowicz, M.2
Helinski, D.R.3
-
28
-
-
17144433412
-
Isomerization and apparent DNA bending by π, the replication protein of plasmid R6K
-
Krüger R., Rakowski S.A., and Filutowicz M. Isomerization and apparent DNA bending by π, the replication protein of plasmid R6K. Biochem. Biophys. Res. Commun. 313 (2004) 834-840
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.313
, pp. 834-840
-
-
Krüger, R.1
Rakowski, S.A.2
Filutowicz, M.3
-
29
-
-
18944400736
-
Role of π dimers in coupling ("handcuffing") of plasmid R6K's γ ori iterons
-
Kunnimalaiyaan S., Inman R.B., Rakowski S.A., and Filutowicz M. Role of π dimers in coupling ("handcuffing") of plasmid R6K's γ ori iterons. J. Bacteriol. 187 (2005) 3779-3785
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3779-3785
-
-
Kunnimalaiyaan, S.1
Inman, R.B.2
Rakowski, S.A.3
Filutowicz, M.4
-
30
-
-
10944249587
-
The DnaK-DnaJ-GrpE chaperone system activates inert wild type π initiator protein of R6K into a form active in replication initiation
-
Zzaman S., Reddy J.M., and Bastia D. The DnaK-DnaJ-GrpE chaperone system activates inert wild type π initiator protein of R6K into a form active in replication initiation. J. Biol. Chem. 279 (2004) 50886-50894
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 50886-50894
-
-
Zzaman, S.1
Reddy, J.M.2
Bastia, D.3
-
32
-
-
33746549124
-
Small deletion variants of the replication protein, π, and their potential for over-replication-based antimicrobial activity
-
Peng Y., Rakowski S.A., and Filutowicz M. Small deletion variants of the replication protein, π, and their potential for over-replication-based antimicrobial activity. FEMS Microbiol. Letters 261 (2006) 245-252
-
(2006)
FEMS Microbiol. Letters
, vol.261
, pp. 245-252
-
-
Peng, Y.1
Rakowski, S.A.2
Filutowicz, M.3
-
33
-
-
0025978538
-
Computer simulations and experimental studies of gel mobility patterns for weak and strong non-cooperative protein binding to two targets on the same DNA: application to binding of tet repressor variants to multiple and single tet operator sites
-
Kleinschmidt C., Tovar K., and Hillen W. Computer simulations and experimental studies of gel mobility patterns for weak and strong non-cooperative protein binding to two targets on the same DNA: application to binding of tet repressor variants to multiple and single tet operator sites. Nucl. Acids Res. 19 (1991) 1021-1028
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 1021-1028
-
-
Kleinschmidt, C.1
Tovar, K.2
Hillen, W.3
-
34
-
-
0025768548
-
Determination of binding constants for cooperative site-specific protein-DNA interactions using the gel mobility-shift assay
-
Senear D.F., and Brenowitz M. Determination of binding constants for cooperative site-specific protein-DNA interactions using the gel mobility-shift assay. J. Biol. Chem. 266 (1991) 13661-13671
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 13661-13671
-
-
Senear, D.F.1
Brenowitz, M.2
-
35
-
-
0025788990
-
Monomerization of RepA dimers by heat shock proteins activates binding to DNA replication origin
-
Wickner S., Hoskins J., and McKenney K. Monomerization of RepA dimers by heat shock proteins activates binding to DNA replication origin. Proc. Natl. Acad. Sci. USA 88 (1991) 7903-7907
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7903-7907
-
-
Wickner, S.1
Hoskins, J.2
McKenney, K.3
-
36
-
-
0032167615
-
Mechanistic studies of initiator-initiator interaction and replication initiation
-
Lu Y.B., Datta H.J., and Bastia D. Mechanistic studies of initiator-initiator interaction and replication initiation. EMBO J. 17 (1998) 5192-5200
-
(1998)
EMBO J.
, vol.17
, pp. 5192-5200
-
-
Lu, Y.B.1
Datta, H.J.2
Bastia, D.3
-
37
-
-
0028970495
-
A DNA segment conferring stable maintenance on R6K γ-origin core replicons
-
Wu F., Levchenko I., and Filutowicz M. A DNA segment conferring stable maintenance on R6K γ-origin core replicons. J. Bacteriol. 177 (1995) 6338-6345
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6338-6345
-
-
Wu, F.1
Levchenko, I.2
Filutowicz, M.3
-
38
-
-
0024386239
-
Negative control of plasmid R6K replication: possible role of intermolecular coupling of replication origins
-
McEachern M.J., Bott M.A., Tooker P.A., and Helinski D.R. Negative control of plasmid R6K replication: possible role of intermolecular coupling of replication origins. Proc. Natl Acad. Sci. USA 86 (1989) 7942-7946
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 7942-7946
-
-
McEachern, M.J.1
Bott, M.A.2
Tooker, P.A.3
Helinski, D.R.4
-
39
-
-
0037126609
-
Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number
-
Park K., Han E., Paulsson J., and Chattoraj D.K. Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number. EMBO J. 20 (2001) 7323-7332
-
(2001)
EMBO J.
, vol.20
, pp. 7323-7332
-
-
Park, K.1
Han, E.2
Paulsson, J.3
Chattoraj, D.K.4
-
40
-
-
0035794113
-
Sequence recognition, cooperative interaction, and dimerization of the initiator protein DnaA of Streptomyces
-
Majka J., Zakrzewska-Czerwinska J., and Messer W. Sequence recognition, cooperative interaction, and dimerization of the initiator protein DnaA of Streptomyces. J. Biol. Chem. 276 (2001) 6243-6252
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 6243-6252
-
-
Majka, J.1
Zakrzewska-Czerwinska, J.2
Messer, W.3
-
41
-
-
9644283008
-
Cooperative binding of the leucine-responsive regulatory protein (Lrp) to DNA
-
Chen S., Iannolo M., and Calvo J.M. Cooperative binding of the leucine-responsive regulatory protein (Lrp) to DNA. J. Mol. Biol. 345 (2005) 251-264
-
(2005)
J. Mol. Biol.
, vol.345
, pp. 251-264
-
-
Chen, S.1
Iannolo, M.2
Calvo, J.M.3
-
42
-
-
0024814234
-
Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector
-
Kim J., Zwieb C., Wu C., and Adhya S. Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector. Gene 85 (1989) 15-23
-
(1989)
Gene
, vol.85
, pp. 15-23
-
-
Kim, J.1
Zwieb, C.2
Wu, C.3
Adhya, S.4
-
44
-
-
0033255928
-
6)-tag dependent protein dimerization: a cautionary tale
-
6)-tag dependent protein dimerization: a cautionary tale. Acta Biochim. Polonica 46 (1999) 591-599
-
(1999)
Acta Biochim. Polonica
, vol.46
, pp. 591-599
-
-
Wu, J.1
Filutowicz, M.2
-
45
-
-
0038121593
-
Characterization of His-tagged, R6K-encoded π protein variants
-
Krüger R., and Filutowicz M. Characterization of His-tagged, R6K-encoded π protein variants. Plasmid 50 (2003) 80-85
-
(2003)
Plasmid
, vol.50
, pp. 80-85
-
-
Krüger, R.1
Filutowicz, M.2
-
46
-
-
0033522913
-
Role of multiple CytR binding sites on cooperativity, competition, and induction at the Escherichia coli udp promoter
-
Gavigan S.A., Nguyen T., Nguyen N., and Senear D.F. Role of multiple CytR binding sites on cooperativity, competition, and induction at the Escherichia coli udp promoter. J. Biol. Chem. 274 (1999) 16010-16019
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16010-16019
-
-
Gavigan, S.A.1
Nguyen, T.2
Nguyen, N.3
Senear, D.F.4
-
47
-
-
0022437260
-
Quantitative DNase footprint titration: a method for studying protein-DNA interactions
-
Brenowitz M., Senear D.F., Shea M.A., and Ackers G.K. Quantitative DNase footprint titration: a method for studying protein-DNA interactions. Methods Enzymol 130 (1986) 132-181
-
(1986)
Methods Enzymol
, vol.130
, pp. 132-181
-
-
Brenowitz, M.1
Senear, D.F.2
Shea, M.A.3
Ackers, G.K.4
|