Role of multiple CytR binding sites on cooperativity, competition, and induction at the Escherichia coli udp promoter

Journal of Biological Chemistry

Volumn 274, Issue 23, 1999, Pages 16010-16019

  Gavigan, Stacey A ^a   Nguyen, Tulan ^a   Nguyen, Nghia ^a   Senear, Donald F ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP; CYTIDINE; RECEPTOR PROTEIN;

ARTICLE; BINDING COMPETITION; BINDING SITE; DNA BINDING; DNA FOOTPRINTING; ESCHERICHIA COLI; GENE EXPRESSION; GENE EXPRESSION REGULATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION REGULATION;

ESCHERICHIA COLI; EUKARYOTA; PROKARYOTA;

EID: 0033522913     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.23.16010     Document Type: Article

References (36)

1. Valentin-Hansen, P., Sogaard-Andereen, L., and Pedersen, H. (1996) Mol. Microbiol. 20, 461-466
2. Martinussen, J., Mollegaard, N. E., Holst, B., Douthwaite, S. R., and Valentin-Hansen, P. (1989) in DNA-Protein Interactions in Transcription (Gralla, J. D., ed), pp. 31-41, Alan R. Liss, New York
3. Barbier, C. S., Short, S. A., and Senear, D. F. (1997) J. Biol. Chem. 272, 16962-16971
4. Pedersen, H., Sogaard-Andersen, L., Holst, B., and Valentin-Hansen, P. (1991) J. Biol. Chem. 266, 17804-17808
5. Perini, L. T., Doherty, E. A., Werner, E., and Senear, D. F. (1996) J. Biol. Chem. 271, 33242-33255
6. Kristensen, H. H., Valentin-Hansen, P., and Sogaard-Andersen, L. (1996) J. Mol. Biol. 260, 113-119
7. Rasmussen, P. B., Sogaard-Andersen, L., and Valentin-Hansen, P. (1993) Nucleic Acids Res. 21, 879-885
8. Pedersen, H., and Valentin-Hansen, P. (1997) EMBO J. 16, 2108-2118
9. Jorgensen, C. I., Kallipolitis, B. H., and Valentin-Hansen, P. (1998) Mol. Microbiol. 27, 41-50
10. Belyaeva, T. A., Rhodius, V. A., Webster, C. L., and Busby, S. J. (1998) J. Mol. Biol. 277, 789-804
11. Ushida, C., and Aiba, H. (1990) Nucleic Acids Res. 18, 6325-6330
12. Ebright, R. H. (1993) Mol. Microbiol. 8, 797-802
13. Kallipolitis, B. H., Norregaard, M. M., and Valentin-Hansen, P. (1997) Cell 89, 1101-1109
14. Brenowitz, M., Senear, D. F., Shea, M. A., and Ackers, G. K. (1986) Methods Enzymol. 130, 132-181
15. Brenowitz, M., and Senear, D. F. (1989) in Current Protocols in Molecular Biology (Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., eds), Vol. 2, Supplement 7, pp. 12.4.1-12.4.16, Greene Publishing Associates and Wiley-Interscience Associates, New York
16. Gronenborn, A. M., and Clore, G. M. (1986) Biochem. J. 236, 643-649
17. Waxman, E., Rusinova, E., Hasselbacher, C. A., Schwartz, G. P., Laws, W. R., and Ross, J. B. A. (1993) Anal. Biochem. 210, 425-428
18. Wetlaufer, D. B. (1962) Adv. Protein Chem. 17, 303-390
19. Takahashi, M., Blazy, B., Baudras, A., and Hillen, W. (1989) J. Mol. Biol. 207, 783-796
20. Choi, K. Y., and Zalkin, H. (1992) J. Bacteriol 174, 6207-6214
21. Files, J. G., and Weber, K. (1976) J. Biol. Chem. 251, 3386-3391
22. Barbier, C. S., and Short, S. A. (1992) J. Bacteriol. 174, 2881-2890
23. Maniatas, T., Fritsch, E. F., and Sambrook, J. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
24. Senear, D. F., and Batey, R. (1991) Biochemistry 30, 6677-6688
25. Ackers, G. K., Shea, M. A., and Smith, F. R. (1983) J. Mol. Biol. 170, 223-242
26. Senear, D. F., and Ackers, G. K (1990) Biochemistry 29, 6568-6577
27. Senear, D. F., Perini, L. T., and Gavigan, S. A. (1998) Methods Enzymol. 29, 403-424
28. Senear, D. F., and Bolen, D. W. (1992) Methods Enzymol. 210, 463-481
29. Johnson, M. L., and Faunt, L. M. (1992) Methods Enzymol. 210, 1-37
30. Rasmussen, P. B., Holst, B., and Valentin-Hansen, P. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 10151-10155
31. Kristensen, H. H., Valentin-Hansen, P., and Sogaard-Andersen, L. (1997) J. Mol. Biol. 266, 866-876
32. Pedersen, H., Dall, J., Dandanell, G., and Valentin-Hansen, P. (1995) Mol. Microbiol. 17, 843-853
33. Lewis, M., Chang, G., Horton, N, C., Kercher, M. A., Pace, H. C., Schumacher, M. A., Brennan, R. G., and Lu, P. (1996) Science 271, 1247-1254
34. Schumacher, M. A., Choi, K. Y., Zalkin, H., and Brennan, R. G. (1994) Science 266, 763-770
35. Schumacher, M. A., Choi, K. Y., Lu, F., Zalkin, H., and Brennan, R. G. (1995) Cell 83, 147-155
36. Weickert, M. J., and Adhya, S. (1992) J. Biol. Chem. 267, 15869-15874