Sequence and organization of the Heliothis virescens ascovirus genome

Journal of General Virology

Volumn 88, Issue 4, 2007, Pages 1120-1132

  Asgari, Sassan ^a   Davis, John ^a   Wood, David ^a   Wilson, Peter ^a   McGrath, Annette ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE; CYTOSINE; GUANINE; VIRUS DNA;

ARTICLE; ASCOVIRUS; BASE PAIRING; DNA SEQUENCE; GENE IDENTIFICATION; GENETIC ORGANIZATION; HELIOTHIS VIRESCENS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE METABOLISM; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN CONTENT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; VIRUS GENOME; VIRUS REPLICATION;

AMINO ACID SEQUENCE; ANIMALS; APOPTOSIS; ASCOVIRIDAE; BACULOVIRIDAE; BASE COMPOSITION; BASE SEQUENCE; DNA, VIRAL; GENES, VIRAL; GENOME, VIRAL; IRIDOVIRUS; MOLECULAR SEQUENCE DATA; MOTHS; OPEN READING FRAMES; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS; VIRUS REPLICATION;

ASCOVIRUS; HELIOTHIS VIRESCENS; IRIDOVIRUS; SPODOPTERA FRUGIPERDA; SPODOPTERA FRUGIPERDA ASCOVIRUS 1A; TRICHOPLUSIA NI;

EID: 34047150410     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.82651-0     Document Type: Article

References (32)

1. Ayres, M. D., Howard, S. C., Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202, 586-605.
2. Bawden, A. L., Glassberg, K. J., Diggans, J., Shaw, R., Farmerie, W. & Moyer, R. W. (2000). Complete genomic sequence of the Amsacta moorei entomopoxvirus: analysis and comparison with other poxviruses. Virology 274, 120-139.
3. Bideshi, D. K., Renault, S., Stasiak, K., Federici, B. A. & Bigot, Y. (2003). Phylogenetic analysis and possible function of bro-like genes, a multigene family widespread among large double-stranded DNA viruses of invertebrates and bacteria. J Gen Virol 84, 2531-2544.
4. Bideshi, D. K., Tan, Y., Bigot, Y. & Federici, B. A. (2005). A viral caspase contributes to modified apoptosis for virus transmission. Genes Dev 19, 1416-1421.
5. Bideshi, D. K., Demattei, M. V., Rouleux-Bonnin, F., Stasiak, K., Tan, Y., Bigot, S., Bigot, Y. & Federici, B. A. (2006). Genomic sequence of the Spodoptera frugiperda ascovirus 1a, an enveloped, double-stranded DNA insect virus that manipulates apoptosis for viral reproduction. J Virol 80, 11791-11805.
6. Bigot Y., Rabouille, A., Doury, G., Sizaret, P.-Y., Belbost, F., Hamelin, M.-H. & Periquet G. (1997a). Biological and molecular features of the relationships between Diadromus pulchellus ascovirus, a parasitoid hymenopteran wasp (Diadromus pulchellus) and its lepidopteran host, Acrolepiopsis assectella. J Gen Virol 78, 1149-1163.
7. Bigot, Y., Rabouille, A., Sizaret, P. Y., Hamelin, M. H. & Periquet, G. (1997b). Particle and genomic characteristics of a new member of the Ascoviridae: Diadromus pulchellus ascovirus. J Gen Virol 78, 1139-1147.
8. Cheng, X.-W., Carner, G. R. & Brown, T. M. (1999). Circular configuration of the genome of ascoviruses. J Gen Virol 80, 1537-1540.
9. Cheng, X.-W., Wang, L., Carner, G. R. & Arif, B. M. (2005). Characterization of three ascovirus isolates from cotton insects. J Invertebr Pathol 89, 193-202.
10. Coulombe, B. & Langelier, M. F. (2005). Functional dissection of the catalytic mechanism of mammalian RNA polymerase II. Biochem Cell Biol 83, 497-504.
11. Delaroque, N., Wolf, S., Muller, D. G. & Knippers, R. (2000). The brown algal virus EsV-1 particle contains a putative hybrid histidine kinase. Virology 273, 383-390.
12. Delcher, A. L., Harmon, D., Kasif, S., White, O. & Salzberg, S. L. (1999). Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27, 4636-4641.
13. Espagne, E., Dupuy, C., Huguet, E., Cattolico, L., Provost, B., Martins, N., Poirie, M., Periquet G. & Drezen, J.-M. (2004). Genome sequence of a polydnavirus: insights into symbiotic virus evolution. Science 306, 286-289.
14. Federici, B. A. (1983). Enveloped double-stranded DNA insect virus with novel structure and cytopathology. Proc Natl Acad Sci U S A 80, 7664-7668.
15. Federici, B. A. & Bigot, Y. (2003). Origin and evolution of polydnaviruses by symbiogenesis of insect DNA viruses in endoparasitic wasps. J Insect Physiol 49, 419-432.
16. Federici, B. A., Hamm, J. J. & Styer, E. L. (1991). Ascoviridae. In Atlas of Invertebrate Viruses, pp. 339-349. Edited by J. R. Adams & J. R. Bonami. Boca Raton, FL: CRC Press.
17. Federici, B. A., Bigot, Y., Granados, R. R., Hamm, J. J., Miller, L. K., Newton, I., Stasiak, K. & Vlak, J. M. (2005). Family Ascoviridae. In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, pp. 269-274. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. San Diego: Elsevier Academic Press.
18. Hu, Z. H., Arif, B. M., Jin, F., Martens, J. W. M., Chen, X. W., Sun, J. S., Zuidema, D., Goldbach, R. W. & Vlak, J. M. (1998). Distinct gene arrangement in the Buzura suppressaria single-nucleocapsid nucleo-polyhedrovirus genome. J Gen Virol 79, 2841-2851.
19. Jakob, N. J., Müller, K., Bahr, U. & Darai, G. (2001). Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus. Virology 286, 182-196.
20. Kang, W., Suzuli, M., Evgueni, Z., Okano, K. & Maeda, S. (1999). Characterization of baculovirus repeated open reading frames (bro) in Bombyx mori nucleopolyhedrovirus. J Virol 73, 10339-10345.
21. Li, L., Donly, C., Li, Q., Willis, L. G., Keddie, B. A., Erlandson, M. A. & Theilmann, D. A. (2002). Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata. Virology 297, 226-244.
22. Marchler-Bauer, A., Anderson, J. B., Cherukuri, P. F., DeWeese-Scott, C., Geer, L. Y., Gwadz, M., He, S., Hurwitz, D. I., Jackson, J. D. & other authors (2005). CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res 33, D192-D196.
23. Miller, L. K (1998). Ascoviruses. In The Insect Viruses, pp. 91-104. Edited by L. K. Miller & L. A. Ball. New York: Plenum Press.
24. Newton, I. R. (2003). The biology and characterisation of the ascoviruses (Ascoviridae: Ascovirus) of Helicoverpa armigera Hübner and Helicoverpa punctigera Wallengren (Lepidoptera: Noctuidae) in Australia. Brisbane, Australia: University of Queensland.
25. Parsons, J. D. (1995). Miropeats: graphical DNA sequence comparisons. Comput Appl Biosci 11, 615-619.
26. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning. A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
27. Stasiak, K., Renault, S., Demattei, M.-V., Bigot, Y. & Federici, B. A. (2003). Evidence for the evolution of ascoviruses from iridoviruses. J Gen Virol 84, 2999-3009.
28. Stasiak, K., Renault, S., Federici, B. A. & Bigot Y. (2005). Characteristics of pathogenic and mutualistic relationships of ascoviruses in field populations of parasitoid wasps. J Insect Physiol 51, 103-115.
29. Wang, L., Xue, J., Seaborn, C. P., Arif, B. M. & Cheng, X.-W. (2006). Sequence and organization of the Trichoplusia ni ascovirus 2C (Ascoviridae) genome. Virology 354, 167-177.
30. Webb, B. A., Strand, M. R., Dickey, S. E., Beck, M. H., Hilgarth, R. S., Barney, W. E., Kadash, K., Kroemer, J. A., Lindstrom, K. G. & other authors (2006). Polydnavirus genomes reflect their dual roles as mutualists and pathogens. Virology 347, 160-174.
31. Whitfield, J. B. & Asgari, S. (2003). Virus or not? Phylogenetics of polydnaviruses and their wasp carriers. J Insect Physiol 49, 397-405.
32. Zemskov, E. A., Kang, W. & Maeda, S. (2000). Evidence for nucleic acid binding ability and nucleosome association of Bombyx mori nucleopolyhedrovirus BRO proteins. J Virol 74, 6784-6789.