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Volumn , Issue , 2006, Pages 5826-5829

A fast algorithm for low-resolution protein structure prediction

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN DATA BANK (PDB); STRUCTURAL MODELS; TERTIARY STRUCTURE PREDICTION;

EID: 34047144904     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2006.259358     Document Type: Conference Paper
Times cited : (4)

References (21)
  • 1
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • Kitchen DB, Decornez H, Furr JR, Bajorath J (2004). Docking and scoring in virtual screening for drug discovery: methods and applications. Nat Rev Drug Discov. 3(11):935-949.
    • (2004) Nat Rev Drug Discov , vol.3 , Issue.11 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 3
    • 34047123240 scopus 로고    scopus 로고
    • progress, bottlenecks and prognosis in protein structure prediction
    • Moult J (2005). A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
    • (2005) A decade of CASP
    • Moult, J.1
  • 4
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three-dimensional structure
    • Bowie JU, Luthy R, Eisenberg D (1991). A method to identify protein sequences that fold into a known three-dimensional structure. Science. 253:164-170.
    • (1991) Science , vol.253 , pp. 164-170
    • Bowie, J.U.1    Luthy, R.2    Eisenberg, D.3
  • 5
    • 0027300346 scopus 로고
    • Modeling protein structures: Construction and their applications
    • Ring CS, Cohen FE (1993). Modeling protein structures: construction and their applications. FASEB J. 7(9):783-790.
    • (1993) FASEB J , vol.7 , Issue.9 , pp. 783-790
    • Ring, C.S.1    Cohen, F.E.2
  • 6
    • 0023430366 scopus 로고
    • Monte carlo-minimization approach to the multiple-minima problem in protein folding
    • Li Z, Scheraga HA (1987). Monte carlo-minimization approach to the multiple-minima problem in protein folding. Proc Natl Acad Sci USA 84:6611-6615.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6611-6615
    • Li, Z.1    Scheraga, H.A.2
  • 7
    • 0031585984 scopus 로고    scopus 로고
    • Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
    • Simons KT, Kooperberg C, Huang E, Baker D (1997). Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions. J. Mol. Biol. 268(1):209-225.
    • (1997) J. Mol. Biol , vol.268 , Issue.1 , pp. 209-225
    • Simons, K.T.1    Kooperberg, C.2    Huang, E.3    Baker, D.4
  • 8
    • 0032555696 scopus 로고    scopus 로고
    • Prediction of local structure in proteins using a library of sequence-structure motifs
    • Bystroff C, Baker D (1999). Prediction of local structure in proteins using a library of sequence-structure motifs. J. Mol. Biol. 281:565-577.
    • (1999) J. Mol. Biol , vol.281 , pp. 565-577
    • Bystroff, C.1    Baker, D.2
  • 9
    • 2942552020 scopus 로고    scopus 로고
    • Inbar Y, Benyamini H, Nussinov R, Wolfson HJ (2003). Protein structure prediction via combinatorial assembly of sub-structural units. Bioinformatics. 19 Suppl 1:il58-il68.
    • Inbar Y, Benyamini H, Nussinov R, Wolfson HJ (2003). Protein structure prediction via combinatorial assembly of sub-structural units. Bioinformatics. 19 Suppl 1:il58-il68.
  • 10
    • 0142116211 scopus 로고    scopus 로고
    • A reversible fragment assembly method for de novo protein structure prediction
    • Chikenji G, Fujitsuka Y, Takada S (2003). A reversible fragment assembly method for de novo protein structure prediction. Journal of Chemical Physics. 119:6895-6903.
    • (2003) Journal of Chemical Physics , vol.119 , pp. 6895-6903
    • Chikenji, G.1    Fujitsuka, Y.2    Takada, S.3
  • 11
    • 4043058565 scopus 로고    scopus 로고
    • Lee J, Kim SY, Joo K, Kim I, Lee J (2004). Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing. Proteins. 1;56(4):704-714.
    • Lee J, Kim SY, Joo K, Kim I, Lee J (2004). Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing. Proteins. 1;56(4):704-714.
  • 13
    • 0242267499 scopus 로고    scopus 로고
    • Assessment of progress over the CASP experiments
    • Venclovas C, Zemla A, Fidelis K, Moult J (2003). Assessment of progress over the CASP experiments. Proteins. 53 Suppl 6:585-595.
    • (2003) Proteins , vol.53 , Issue.SUPPL. 6 , pp. 585-595
    • Venclovas, C.1    Zemla, A.2    Fidelis, K.3    Moult, J.4
  • 14
    • 1842584571 scopus 로고    scopus 로고
    • High-resolution prediction of protein helix positions and orientations
    • Li X, Jacobson MP, Friesner RA (2004). High-resolution prediction of protein helix positions and orientations. Proteins. 55(2):368-82.
    • (2004) Proteins , vol.55 , Issue.2 , pp. 368-382
    • Li, X.1    Jacobson, M.P.2    Friesner, R.A.3
  • 15
    • 24944493938 scopus 로고    scopus 로고
    • Toward high-resolution de novo structure prediction for small proteins
    • Bradley P, Misura KM, Baker D (2005). Toward high-resolution de novo structure prediction for small proteins. Science. 309(5742):1868-71.
    • (2005) Science , vol.309 , Issue.5742 , pp. 1868-1871
    • Bradley, P.1    Misura, K.M.2    Baker, D.3
  • 19
    • 0028205447 scopus 로고
    • Enlarged Representative set of protein structures
    • Hobohm U, Sander C (1994). Enlarged Representative set of protein structures, Protein Science 3: 522.
    • (1994) Protein Science , vol.3 , pp. 522
    • Hobohm, U.1    Sander, C.2
  • 21
    • 84945709831 scopus 로고
    • Algorithm 97: Shortest Path
    • Floyd RW (1962). Algorithm 97: Shortest Path. Communications of the ACM 5 (6): 345.
    • (1962) Communications of the ACM , vol.5 , Issue.6 , pp. 345
    • Floyd, R.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.