Microsatellite variation in Avena sterilis oat germplasm

Theoretical and Applied Genetics

Volumn 114, Issue 6, 2007, Pages 1029-1038

  Fu, Yong Bi ^a   Chong, James ^b   Fetch, Tom ^b   Wang, Ming Li ^c  

^a SASKATOON RESEARCH CENTRE   (Canada)

^b Cereal Research Centre   (Canada)

^c U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; GENES; MOLECULAR DYNAMICS;

GENETIC DIVERSITY; GERMPLASM; MICROSATELLITE VARIATION; STEM RUSTS;

CELLS;

MICROSATELLITE DNA; PLANT DNA; PRIMER DNA;

ALGORITHM; ALLELE; ARTICLE; BASE PAIRING; BASIDIOMYCETES; CLASSIFICATION; CLUSTER ANALYSIS; EXPRESSED SEQUENCE TAG; GENE; GENE FREQUENCY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; ISOLATION AND PURIFICATION; MICROBIOLOGY; NUCLEOTIDE SEQUENCE; OAT; PATHOGENICITY; POLYMERASE CHAIN REACTION;

ALGORITHMS; ALLELES; AVENA SATIVA; BASE PAIRING; BASE SEQUENCE; BASIDIOMYCOTA; CLUSTER ANALYSIS; DNA PRIMERS; DNA, PLANT; EXPRESSED SEQUENCE TAGS; GENE FREQUENCY; GENES, PLANT; GENETIC MARKERS; GEOGRAPHY; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; VARIATION (GENETICS);

ALLELES; CELLS; GENES; OATS;

AVENA; AVENA SATIVA; AVENA STERILIS; PUCCINIA CORONATA; PUCCINIA GRAMINIS F. SP. AVENAE; UREDINALES;

EID: 34047124196     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0496-7     Document Type: Article

References (56)

1. Baum BR (1977) Oats: wild and cultivated, a monograph of the Genus Avena L. (Poaceae). Thorn Press, Ottawa
2. Becker J, Heun M (1995) Barley microsatellites: allele variation and mapping. Plant Mol Biol 27:835-845
3. Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172:1165-1177
4. Brown AHD (1989) Core collections: a practical approach to genetic resources management. Genome 31:818-824
5. Brown AHD, Spillane C (1999) Implementing core collections - principles, procedures, progress, problems and promise. In: Johnson RC, Hodgkin T (eds) Collections for today and tomorrow. International Plant Genetic Resources Institute, Rome, pp 1-9
6. Clamot G, Rivoal R (1984) Genetic resistance to cereal cyst nematode Heterodera avenae Woll. in wild oat Avena sterilis I. 376. Euphytica 33:27-32
7. Coffman FA (1977) Oat history, identification and classification. USDA-ARS Tech Bull No 1516, Washington
8. Diederichsen A, Timmermans E, Williams DJ, Richards KW (2001) Holdings of Avena germplasm at Plant Gene Resources of Canada and status of the collection. Oat Newslett 47:35-42
9. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
10. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.01: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50
11. Fox SL, Brown PD, Chong J (1997) Inheritance of crown rust resistance in four accessions of Avena sterilis L. Crop Sci 37:342-345
12. Frey KJ (1991) Genetic resources of oats. In: Shands HL, Wiesner L (eds) Use of plant introduction in cultivar development. Crop Science Society of America Special Publication No. 17, Madison, pp 15-24
13. Fu YB (2003) Applications of bulking in molecular characterization of plant germplasm: a critical review. Plant Genet Res 1:161-167
14. Fu YB, Peterson GW, Scoles G, Rossnagel B, Schoen DJ, Richards KW (2003) Allelic diversity changes in 96 Canadian oat cultivars released from 1886 to 2001. Crop Sci 43:1989-1995
15. Fu YB, Peterson GW, Williams D, Richards KW, Mitchell Fetch J (2005) Patterns of AFLP variation in a core subset of cultivated hexaploid oat germplasm. Theor Appl Genet 111:530-539
16. Gao LF, Tang JF, Li HW, Jia JZ (2003) Analysis of microsatellites in major crops assessed by computational and experimental approaches. Mol Breed 12:245-261
17. Goffreda JC, Burnquist WB, Beer SC, Tanksley SD, Sorrells ME (1992) Application of molecular markers to assess genetic relationships among accessions of wild oat, Avena sterilis. Theor Appl Genet 85:146-151
18. Harder DE, Chong J, Brown PD, Martens JW (1990) Inheritance of resistance to Puccinia coronata avenae and P. graminis avenae in an accession of Avena sterilis from Spain. Genome 33:198-202
19. Harder DE, Chong J, Brown PD, Sebesta J, Fox S (1992) Wild oat as a source of disease resistance: history, utilization, and prospects. In: Proceedings of the 4th international oat conference, wild oats in world agriculture, vol II. Adelaide, Australia, pp 71-81
20. Holland JB, Helland SJ, Sharopova N, Rhyne DC (2001) Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat. Genome 44:1065-1076
21. Hunter DE II, Murphy JP, Phillips TD (1995) Isozyme variation in Avena sterilis L. collected in Turkey. Crop Sci 35:1477-1482
22. Jannink J-L, Gardner SW (2005) Expanding the pool of PCR-based markers for oat. Crop Sci 45:2383-2387
23. Karp A (2002) The new genetic era: will it help us in managing genetic diversity? In: Engels JMM, Rao VR, Brown AHD, Jackson MT (eds) Managing plant genetic diversity. International Plant Genetic Resources Institute, Rome, pp 43-56
24. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
25. Li CD, Rossnagel BG, Scoles GJ (2000) The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theor Appl Genet 101:1259-1268
26. Liu ZW, Biyashev RM, Saghai Maroof MA (1996) Development of single sequence repeat markers and their integration into a barley linkage map. Theor Appl Genet 93:869-876
27. Martens JW (1985) Oat stem rust. In: Roelfs AP, Bushnell WR (eds) The cereal rusts, vol II. Academic, New York, pp 103-129
28. Martens JW, McKenzie RIH, Harder DE (1980) Resistance to Puccinia graminis avenae and P. coronata avenae in the wild and cultivated Avena populations of Iran, Iraq, and Turkey. Can J Genet Cytol 22:641-649
29. McKenzie RIH, Harder DE (1995) Oat. In: Slinkard AE, Knott DR (eds) Harvest of gold: the history of field crop breeding in Canada. University of Saskatchewan, Saskatoon, pp 98-112
30. McKenzie RIH, Martens JW, Brown PD, Harder DE, Nielsen J, Boughton GR (1981) Registration of Fidler oats. Crop Sci 21:632-633
31. McKenzie RIH, Brown PD, Martens JW, Harder DE, Nielsen J, Gill CC, Boughton GR (1984) Registration of Dumont oats. Crop Sci 24:207
32. McMullen MS, Patterson FL (1992) Oat Cultivar Development in the USA and Canada. In: Marshall HG, Sorrells ME (eds) Oat science and technology. American Soc Agron Inc. and Crop Sci Soc America Publishers, Madison, pp 573-612
33. Murphy JP, Phillips TD (1993) Isozyme variation in cultivated oat and its progenitor species Avena sterilis L. Crop Sci 33:1366-1372
34. Pal N, Sandhu JS, Domier LL, Kolb FL (2002) Development and characterization of microsatellite and RFLP-derived PCR markers in oat. Crop Sci 42:912-918
35. Phillips TD, Murphy JP, Goodman MM (1993) Isozyme variation in germplasm accessions of the wild oat Avena sterilis L. Theor Appl Genet 86:54-64
36. Rajhathy T, Thomas H (1974) Cytogenetics of oats (Avena L.). The Genetics Society of Canada, Misc Publ No 2
37. Rezai A, Frey KJ (1988) Variation in relation to geographic distribution of wild oats - seed traits. Euphytica 39:113-118
38. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007-2023
39. Rohlf FJ (1997) NTSYS-pc 2.1. Numerical taxonomy and multivariate analysis system. Exeter Software, Setauket
40. Roussel V, Koenig J, Bechert M, Balfourier F (2004) Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theor Appl Genet 108:920-930
41. Saha MC, Rouf Mian MA, Eujayl I, Zwonitzer JC, Wang L, May GD (2004) Tall fescue EST-SSR markers with transferability across several grass species. Theor Appl Genet 109:783-791
42. SAS Institute Inc (2004) The SAS system for windows V8.02. SAS Institute Incorporated, Cary
43. Schoen DJ, Brown AHD (1993) Conservation of allelic richness in wild crop relatives is aided by assessment of genetic markers. Proc Natl Acad Sci USA 90:10623-10627
44. Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 38:1409-1438
45. Somody CN, Nalewaja JD, Miller SD (1984) Wild oat (Avena fatua and Avena sterilis) morphological characteristics and response to herbicides. Weed Sci 32:353-359
46. Swofford DL (1998) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland
47. Takeda K, Frey KJ (1977) Growth rate inheritance and association with other traits in backcross populations of Avena sativa x A. sterilis. Euphytica 26:309-317
48. Thomas H (1995) Oats. In: Smartt J, Simmonds NW (eds) Evolution of crop plants. Longman Group, New York, pp 132-140
49. Wahl I (1958) Studies on crown rust and stem rust on oats in Israel. Bull Res Counc Isr Sec D 6:145-166
50. Wahl I (1970) Prevalence and geographic distribution of resistance to crown rust in Avena sterilis. Phytopathology 60:746-749
51. Wang ML, Barkley NA, Yu J-K, Dean RE, Newman ML, Sorrells ME, Pederson GA (2005) Transfer of simple sequence repeat (SSR) markers from major cereal crops to minor grass species for germplasm characterization and evaluation. Plant Genet Res 3:45-57
52. Wu X, Larson SR, Hu Z, Palazzo AJ, Jones TA, Wang RR-C, Jensen KB, Chatterton NJ (2003) Molecular genetic linkage maps for allotetraploid Leymus wildryes (Gramineae: Triticeae). Genome 46:627-646
53. Yu J-K, Dake TM, Singh S, Benscher D, Li WL, Gill B, Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818
54. Zeven AC, Zhukovsky PM (1975) Dictionary of cultivated plants and their centres of diversity. Centre for Agricultural Publishing and Documentation, Wageningen
55. Zhou X, Jellen EN, Murphy JP (1999) Progenitor germplasm of domesticated hexaploid oat. Crop Sci 39:1208-1214
56. Zohary D, Hopf M (2000) Domestication of plants in the old world: the origin and spread of cultivated plants in West Asia, Europe and the Nile Valley, 3rd edn. Oxford University Press, Oxford