Transfer of simple sequence repeat (SSR) markers from major cereal crops to minor grass species for germplasm characterization and evaluation

Plant Genetic Resources: Characterisation and Utilisation

Volumn 3, Issue 1, 2005, Pages 45-57

  Wang, M L ^a   Barkley, N A ^a   Yu, J K ^b   Dean, R E ^c   Newman, M L ^a   Sorrells, M E ^b   Pederson, G A ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b 240 Emerson Hall ^*  (United States)

^c UNIVERSITY OF GEORGIA   (United States)

Author keywords

Germplasm; Poaceae; Polymorphism level; SSR marker; Transfer rate

Indexed keywords

CYNODON; CYNODON DACTYLON; ELEUSINE; ELEUSINE CORACANA; PASPALUM; PASPALUM VAGINATUM; POACEAE; TRITICUM AESTIVUM; ZEA MAYS;

EID: 18844365928     PISSN: 14792621     EISSN: None     Source Type: Journal    
DOI: 10.1079/PGR200461     Document Type: Article

References (29)

1. Bennetzen JL and Freeling M (1993) Grasses as a single genetic system - genome composition, colinerarity and compatibility. Trends in Genetics 9: 259-261.
2. Brown SM, Hopkins MS, Mitchell SE, Wang TY, Kresovich S, Duncan RR, Senior ML and Gonzalez-Candelas F (1996) Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum [Sorghum bicolor (L.) Moench]. Theoretical and Applied Genetics 93: 190-198.
3. Chen X, Cho YG and McCouch SR (2002) Sequence divergence of rice microsatellites in Oryza and other plant species. Molecular Genetics and Genomics 268: 331-343.
4. Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, McCouch SR, Park WD, Ayres N and Cartinhour S (2000) Diversity of microsatellites derived from genomic libraries and Gen-Bank sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics 100: 712-722.
5. Choi H-K, Mun J-H, Kim D-J, Zhu H, Baek J-M, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND and Cook DR (2004) Estimating genome conservation between crop and model legume species. Proceedings of the National Academy of Science USA 101: 15289-15294.
6. Cordeiro GM, Casu R, McIntyre CL, Manners JM and Henry RJ (2001) Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Science 160: 1115-1123.
7. Doyle JJ and Luckow MA (2003) The rest of the iceberg: legume diversity and evolution in a phylogenetic context. Plant Physiology 131: 900-910.
8. Eujayl I, Sorrells ME, Baum M and Wolters P (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theoretical and Applied Genetics 104: 399-407.
9. Gale MD and Devos KM (1998) Comparative genetics in the grasses. Proceedings of the National Academy of Science USA 95: 1971-1974.
10. Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytologist 154: 15-28.
11. 4 photosynthesis. American Journal of Botany 88: 1993-2012.
12. Goldstein D and Schlöterer C (1999) Microsatellite: Evolution and Applications. Oxford: Oxford University Press.
13. Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N and Balyan HS (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Molecular Genetics and Genomics 270: 315-323.
14. Hernández P, Dorado G, Laurie DA, Martín A and Snape JW (2001) Microsatellites and RFLP probes from maize are efficient sources of molecular markers for the biomass energy crop Miscanthus. Theoretical and Applied Genetics 102: 616-622.
15. Hilu KW and Alice LA (2001) A phylogeny of Chlorioideae (Poaceae) based on matK sequences. Systematic Botany 26: 386-405.
16. Kantety RV, Tota ML, Matthews DE and Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Molecular Biology 48: 501-510.
17. Kellogg EA (1998) Relationships of cereal crops and other grasses. Proceedings of the National Academy of Science USA 95: 2005-2010.
18. Kellogg EA (2000) The grasses: a case study of macroevolution. Annual Review of Ecology, Evolution and Systematics 31: 217-238.
19. Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiology 125: 1198-1205.
20. Moore G, Devos KM, Wang Z and Gale MD (1995) Grasses, line up and form a circle. Current Biology 5: 17-23.
21. Peakall R, Gilmore S, Keys W, Morgante M and Rafalski A (1998) Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Molecular Biology and Evolution 15: 1275-1287.
22. Reichardt M and Rogers S (1997) Preparation of genomic DNA from plant tissue. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA and Struhl K (eds) Current Protocols in Molecular Biology. New York: John Wiley & Sons, pp. 2.3.3-2.3.7.
23. Röder MS, Plaschke J, König SU, Börner A, Sorrells ME, Tanksley SD and Ganal MW (1995) Abundance, variability and chromosomal location of microsatellites in wheat. Molecular and General Genetics 246: 327-333.
24. Saha MC, Mian MAR, Eujayl I, Zwonitzer JC, Wang L and May GD (2004) Tall fescue EST-SSR markers with transferability across several grass species. Theoretical and Applied Genetics, 109: 783-791.
25. Shantz HL (1954) The place of grasslands in the earth's cover of vegetation. Ecology 35: 143-145.
26. Thiel T, Michalek W, Varshney RK and Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 106: 411-422.
27. Wang ML, Gillaspie AG, Newman ML, Dean RE, Pittman RN, Morris JB and Pederson GA (2004) Transfer of simple sequence repeat (SSR) markers across the legume family for germplasm characterization and evaluation. Plant Genetic Resources 2: 107-119.
28. Yu J-K, La Rota M, Kantety RV and Sorrells ME (2004) EST derived SSR markers for comparative mapping in wheat and rice. Molecular Genetics and Genomics 271: 742-751.
29. n microsatellite from rice (Oryza sativa L.). Plant Molecular Biology 21: 607-614.