Patterns of AFLP variation in a core subset of cultivated hexaploid oat germplasm

Theoretical and Applied Genetics

Volumn 111, Issue 3, 2005, Pages 530-539

  Fu, Yong Bi ^a   Peterson, Gregory W ^a   Williams, David ^a   Richards, Ken W ^a   Fetch, Jennifer Mitchell ^b  

^a SASKATOON RESEARCH CENTRE   (Canada)

^b Cereal Research Centre   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; CULTIVATION; GENES; SET THEORY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP); CROP GERMPLASM; GERMPLASM MANAGEMENT; POLYMORPHIC BANDS;

GENETIC ENGINEERING;

PLANT DNA;

ARTICLE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; OAT; PHYLOGENY; PLOIDY; RANDOM AMPLIFIED POLYMORPHIC DNA;

AVENA SATIVA; DNA, PLANT; GENETIC MARKERS; GEOGRAPHY; PHYLOGENY; PLOIDIES; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; VARIATION (GENETICS);

CULTIVATION; FARM CROPS; GENES; GENETIC ENGINEERING;

AVENA SATIVA;

EID: 24044522902     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-2044-2     Document Type: Article

References (42)

1. Baum BR (1977) Oats. Thorn Press, Ottawa
2. Brown AHD (1989a) The case for core collection. In: Brown AHD, Frankel OH, Marshall DR, Williams JT (eds) The use of plant genetic resources. Cambridge University Press, Cambridge, pp 136-156
3. Brown AHD (1989b) Core collections: a practical approach to genetic resources management. Genome 31:818-824
4. Brown AHD, Spillane C (1999) Implementing core collections - principles, procedures, progress, problems and promise. In: Johnson RC, Hodgkin T (eds) Collections for today and tomorrow. International Plant Genetic Resources Institute, Rome, pp 1-9
5. Coffman FA (1977) Oat history, identification and classification. USDA-ARS Tech Bull No 1516, Washington. D.C.
6. Diederichsen A (2004) Case studies for the use of infraspecific classification in managing germplasm collection of cultivated plants. Acta Hortic 634:127-139
7. Diederichsen A, Timmermans E, Williams DJ, Richards KW (2001) Holding of Avena germplasm at plant gene resources of Canada and status of the collection. Oat Newslet 47:35-42
8. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
9. FAO (Food and Agriculture Organization) (1998) Report on the State of the World's Plant Genetic Resources for Food and Agriculture. Food and Agriculture Organization, Rome Italy
10. Frankel OH, Brown AHD (1984) Plant genetic resources today: a critical appraisal. In: Holden JHW, Williams JT (eds) Crop genetic resources: conservation and evaluation. George Allen and Unwin, Winchester, pp 249-268
11. Fu YB (2003) Applications of bulking in molecular characterization of plant germplasm: a critical review. Plant Genet Resour 1:161-167
12. Fu YB, Peterson GW, Scoles G, Rossnagel B, Schoen DJ, Richards KW (2003) Allelic diversity changes in 96 Canadian oat cultivars released from 1886 to 2001. Crop Sci 43:1989-1995
13. Fu YB, Kibite S, Richards KW (2004) Amplified fragment length polymorphism analysis of 96 Canadian oat cultivars released between 1886 and 2001. Can J Plant Sci 84:23-30
14. Hansen M, Kraft T, Christiansson M, Nilsson N-O (1999) Evaluation of AFLP in beta. Theor Appl Genet 98:845-852
15. Harlan JR (1972) Genetic resources in sorghum. In: Rao NGP, House LR (eds) Sorghum in the seventies. Oxford/ IBH, New Delhi, pp 1-13
16. Huff DR (1997) RAPD characterization of heterogeneous perennial ryegrass cultivars. Crop Sci 37:557-564
17. Jellen EN, Beard J (2000) Geographical distribution of a chromosome 7C and 17 intergenomic translocation in cultivated oat. Crop Sci 40:256-263
18. Karp A (2002) The new genetic era: will it help us in managing genetic diversity? In: Engels JMM, Rao VR, Brown AHD, Jackson MT (eds) Managing plant genetic diversity. International Plant Genetic Resources Institute, Rome, pp 43-56
19. Liu F, Sun GL, Salomon B, Bothmer von R (2001) Distribution of allozymic alleles and genetic diversity in the American barley core collection. Theor Appl Genet 102:606-615
20. Murphy JP, Hoffman LA (1992) The origin, history, and production of oat. In: Marshall HG, Sorrells ME (eds) Oat science and technology. American Society of Agronomy/Crop Science Society of America, Madison, pp 1-28
21. Murphy JP, Phillips TD (1993) Isozyme variation in cultivated oat and its progenitor species Avena sterilis L. Crop Sci 33:1366-1372
22. O'Donoughue LS, Souza E, Tanksley SD, Sorrells ME (1994) Relationships among North American oat cultivars based on restriction fragment length polymorphisms. Crop Sci 34:1251-1258
23. Phillips TD, Murphy JP (1993) Distribution and analysis of isozyme polymorphism in North American cultivated oat germplasm. Crop Sci 33:460-469
24. Rodionova NA, Soldatov VN, Merzhko VE, Jarosh NP, Kobyljanskij VL (1994) Flora of cultivated plants, vol 2, part 3: oat (in Russian). Kolos, Moscow
25. Rohlf FJ (1997) NTSYS-PC 2.1. Numerical taxonomy and multivariate analysis system. Exeter Software, Setauket
26. SAS Institute (2004) The SAS system for windows V8.02. SAS Institute, Cary, N.C.
27. Schneider S, Roessli D, Excoffier L (2002) ARLEQUIN version 2.001: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland (available at http://lgb.unige.ch/ arlequin/software)
28. Schoen DJ, Brown AHD (1993) Conservation of allelic richness in wild crop relatives is aided by assessment of genetic markers. Proc Natl Acad Sci USA 90:10623-10627
29. Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. Univ Kansas Sci Bull 38:1409-1438
30. Souza E, Sorrells ME (1989) Pedigree analysis of North American oat cultivars released from 1951 to 1985. Crop Sci 29:595-601
31. Souza E, Sorrells ME (1991a) Relationships among 70 North American oat germplasms: I. Cluster analysis using quantitative characters. Crop Sci 31:599-605
32. Souza E, Sorrells ME (1991b) Relationships among 70 North American oat germplasms: II. Cluster analysis using qualitative characters. Crop Sci 31:605-612
33. Stanton TR (1923) Naked oats. J Hered 14:177-183
34. Thomas H (1995) Oats. In: Smartt J, Simmonds NW (eds) Evolution of crop plants. Longman Group, New York, pp 132-140
35. Ude G, Pillay M, Ogundiwin E, Tenkouano A (2003) Genetic diversity in an African plantain core collection using AFLP and RAPD markers. Theor Appl Genet 107:248-255
36. Vavilov NI (1926) Studies on the origin of cultivated plants (in Russian and English). State Press, Leningrad
37. Vavilov NI (1951) The origin, variation, immunity and breeding of cultivated plants. Chron Bot 13:1-366
38. Vos P, Hogers R, Bleeker M, Reijans M, van De Lee T, Hornes M, Frijters A, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
39. Zeven AC, Zhukovsky PM (1975) Dictionary of cultivated plants and their centres of diversity. Centre for Agricultural Publishing and Documentation, Wageningen
40. Zhou X, Jellen EN, Murphy JP (1999) Progenitor germplasm of domesticated hexaploid oat. Crop Sci 39:1208-1214
41. Zhukovsky PM (1968) New centres of the origin and new gene centres of cultivated plants including specifically endemic micro-centres of species closely allied to cultivated species (in Russian with English abstract). Bot Zh 53:430-460
42. Zohary D, Hopf M (2000) Domestication of plants in the old world: the origin and spread of cultivated plants in West Asia, Europe and the Nile Valley, 3rd edn. Oxford University Press, Oxford