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Volumn 23, Issue 5, 2007, Pages 563-572

Molecular basis for specificity in the druggable kinome: Sequence-based analysis

Author keywords

[No Author keywords available]

Indexed keywords

4 (4 FLUOROPHENYL) 2 (4 HYDROXYPHENYL) 5 (4 PYRIDYL)IMIDAZOLE; 4 (4 FLUOROPHENYL) 2 (4 METHYLSULFINYLPHENYL) 5 (4 PYRIDYL)IMIDAZOLE; 4 [6 METHOXY 7 [3 (1 PIPERIDINYL)PROPOXY] 4 QUINAZOLINYL] 1 PIPERAZINECARBOXYLIC ACID (4 ISOPROPOXYPHENYL)AMIDE; 5 (2,6 DICHLOROPHENYL) 2 (2,4 DIFLUOROPHENYLTHIO)PYRIMIDO[1,6 B]PYRIDAZIN 6 ONE; ABELSON KINASE; ADENOSINE TRIPHOSPHATE; ANTHRA[1,9 CD]PYRAZOL 6(2H) ONE; AURORA A KINASE; AURORA B KINASE; CANERTINIB; CYCLIN DEPENDENT KINASE 2; DEATH ASSOCIATED PROTEIN KINASE; DORAMAPIMOD; EPIDERMAL GROWTH FACTOR RECEPTOR; ERLOTINIB; FLAVOPIRIDOL; GEFITINIB; IMATINIB; LAPATINIB; PELITINIB; PHOSPHOTRANSFERASE INHIBITOR; PREGNANE X RECEPTOR; ROSCOVITINE; RUBOXISTAURIN; SOLVENT; SORAFENIB; SUNITINIB; UNINDEXED DRUG; VANDETANIB; VATALANIB;

EID: 34047098911     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl666     Document Type: Article
Times cited : (36)

References (26)
  • 1
    • 0037392942 scopus 로고    scopus 로고
    • The specificities of protein kinase inhibitors: An update
    • Bain,J. et al. (2003) The specificities of protein kinase inhibitors: An update. Biochem. J., 371, 199-204.
    • (2003) Biochem. J. , vol.371 , pp. 199-204
    • Bain, J.1
  • 2
    • 0036968925 scopus 로고    scopus 로고
    • De novo prediction of three-dimensional structures for major protein families
    • Bonneau,R. et al. (2002) De novo prediction of three-dimensional structures for major protein families. J. Mol. Biol., 322, 65-78.
    • (2002) J. Mol. Biol. , vol.322 , pp. 65-78
    • Bonneau, R.1
  • 3
    • 4744349987 scopus 로고    scopus 로고
    • Combining prediction, computation and experiment for the characterization of protein disorder
    • Braken,C. et al. (2004) Combining prediction, computation and experiment for the characterization of protein disorder. Curr. Opin. Struct. Biol., 14, 570-576.
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 570-576
    • Braken, C.1
  • 4
    • 30344443955 scopus 로고    scopus 로고
    • Prediction of CASP6 structures using automated Robetta protocols
    • (Supplementary Material)
    • Chivian,D. et al. (2005) Prediction of CASP6 structures using automated Robetta protocols. Proteins, 61 (Suppl. 7), 157-166 (Supplementary Material).
    • (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 157-166
    • Chivian, D.1
  • 5
    • 0016352763 scopus 로고
    • Hydrophobic bonding and accessible surface area in proteins
    • Chothia,C. (1974) Hydrophobic bonding and accessible surface area in proteins. Nature, 248, 338-339.
    • (1974) Nature , vol.248 , pp. 338-339
    • Chothia, C.1
  • 6
    • 3843119865 scopus 로고    scopus 로고
    • Imatinib mesylate inhibits T-cell proliferation in vitro and delayed-type hypersensitivity in vivo
    • Dietz,A.B. et al. (2004) Imatinib mesylate inhibits T-cell proliferation in vitro and delayed-type hypersensitivity in vivo. Blood, 104, 1094-1099.
    • (2004) Blood , vol.104 , pp. 1094-1099
    • Dietz, A.B.1
  • 7
    • 3543037572 scopus 로고    scopus 로고
    • Molecularly targeted therapy: Have the floodgates opened?
    • Druker,B.J. (2004) Molecularly targeted therapy: Have the floodgates opened? Oncologist, 9, 357-360.
    • (2004) Oncologist , vol.9 , pp. 357-360
    • Druker, B.J.1
  • 8
    • 0033858499 scopus 로고    scopus 로고
    • Ligand binding and nuclear receptor evolution
    • Escriva,H. et al. (2000) Ligand binding and nuclear receptor evolution. Bioessays, 22, 717-727.
    • (2000) Bioessays , vol.22 , pp. 717-727
    • Escriva, H.1
  • 9
    • 19744365702 scopus 로고    scopus 로고
    • A small molecule kinase interaction map for clinical kinase inhibitors
    • Fabian,M.A. et al. (2005) A small molecule kinase interaction map for clinical kinase inhibitors. Nat. Biotechnol., 23, 329-336.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 329-336
    • Fabian, M.A.1
  • 10
    • 23844500772 scopus 로고    scopus 로고
    • High throughput assays for promiscuous inhibitors
    • Feng,B.Y. et al. (2005) High throughput assays for promiscuous inhibitors. Nat. Chem. Biol., 1, 146-148.
    • (2005) Nat. Chem. Biol. , vol.1 , pp. 146-148
    • Feng, B.Y.1
  • 11
    • 4444354635 scopus 로고    scopus 로고
    • Keeping dry and crossing membranes
    • Fernández,A. (2004) Keeping dry and crossing membranes. Nat. Biotech., 22, 1081-1084.
    • (2004) Nat. Biotech. , vol.22 , pp. 1081-1084
    • Fernández, A.1
  • 12
    • 4544241303 scopus 로고    scopus 로고
    • Molecular dimension explored in evolution to promote proteomic complexity
    • Fernández,A. and Berry,R.S. (2004) Molecular dimension explored in evolution to promote proteomic complexity. Proc. Natl Acad. Sci. USA, 101, 13460-13465.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 13460-13465
    • Fernández, A.1    Berry, R.S.2
  • 13
    • 33744800555 scopus 로고    scopus 로고
    • A priori inference of cross reactivity for drug-targeted kinases
    • Fernández,A. and Maddipati,S. (2006) A priori inference of cross reactivity for drug-targeted kinases. J. Med. Chem., 49, 3092-3100.
    • (2006) J. Med. Chem. , vol.49 , pp. 3092-3100
    • Fernández, A.1    Maddipati, S.2
  • 14
    • 0036971123 scopus 로고    scopus 로고
    • Dynamics of hydrogen bond desolvation in protein folding
    • Fernández,A. et al. (2002) Dynamics of hydrogen bond desolvation in protein folding. J. Mol. Biol., 321, 659-675.
    • (2002) J. Mol. Biol. , vol.321 , pp. 659-675
    • Fernández, A.1
  • 15
    • 0001528720 scopus 로고    scopus 로고
    • Exact and efficient analytical calculation of the accessible surface areas and their gradient for macromolecules
    • Fraczkiewicz,R. and Braun,W. (1998) Exact and efficient analytical calculation of the accessible surface areas and their gradient for macromolecules. J. Comput. Chem., 19, 319-333.
    • (1998) J. Comput. Chem. , vol.19 , pp. 319-333
    • Fraczkiewicz, R.1    Braun, W.2
  • 16
    • 0029976603 scopus 로고    scopus 로고
    • Using CLUSTAL for multiple sequence alignments
    • Higgins,D.G. et al. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol., 266, 383-402.
    • (1996) Methods Enzymol. , vol.266 , pp. 383-402
    • Higgins, D.G.1
  • 17
    • 0030851311 scopus 로고    scopus 로고
    • Cn3D: A new generation of three-dimensional molecular structure viewer
    • Hogue,C.W.V. (1997) Cn3D: A new generation of three-dimensional molecular structure viewer. Trends Biochem. Sci., 22, 314-316.
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 314-316
    • Hogue, C.W.V.1
  • 18
    • 32344446028 scopus 로고    scopus 로고
    • Can we rationally design promiscuous drugs?
    • Hopkins,A.L. et al. (2006) Can we rationally design promiscuous drugs? Curr. Opin. Struct. Biol., 16, 127-136.
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 127-136
    • Hopkins, A.L.1
  • 19
    • 0037013143 scopus 로고    scopus 로고
    • The conformational plasticity of protein kinases
    • Huse,M. and Kuriyan,J. (2002) The conformational plasticity of protein kinases. Cell, 109, 275-282.
    • (2002) Cell , vol.109 , pp. 275-282
    • Huse, M.1    Kuriyan, J.2
  • 20
    • 24944497371 scopus 로고    scopus 로고
    • Features of selective kinase inhibitors
    • Knight,Z.A. and Shokat,K.M. (2005) Features of selective kinase inhibitors. Chem. Biol., 12, 621-637.
    • (2005) Chem. Biol. , vol.12 , pp. 621-637
    • Knight, Z.A.1    Shokat, K.M.2
  • 21
    • 0037609791 scopus 로고    scopus 로고
    • Protein-protein interactions structurally conserved residues distinguish between binding sites and exposed protein surfaces
    • Ma,B. et al. (2003) Protein-protein interactions structurally conserved residues distinguish between binding sites and exposed protein surfaces. Proc. Natl Acad. Sci. USA, 100, 5772-5777.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 5772-5777
    • Ma, B.1
  • 22
    • 0037032835 scopus 로고    scopus 로고
    • The protein kinase complement of the human genome
    • Manning,G. et al. (2002) The protein kinase complement of the human genome. Science, 298, 1912-1934.
    • (2002) Science , vol.298 , pp. 1912-1934
    • Manning, G.1
  • 23
    • 0023338543 scopus 로고
    • Accessible surface area as a measure of the thermodynamic parameters of hydration of peptides
    • Ooi,T. et al. (1987) Accessible surface area as a measure of the thermodynamic parameters of hydration of peptides. Proc. Natl Acad. Sci. USA, 84, 3086-3090.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 3086-3090
    • Ooi, T.1
  • 24
    • 0026342532 scopus 로고
    • Information-theoretical entropy as a measure of sequence variability
    • Shenkin,S.P. et al. (1991) Information-theoretical entropy as a measure of sequence variability. Proteins: Struct. Funct. Genet., 11, 297-313.
    • (1991) Proteins: Struct. Funct. Genet. , vol.11 , pp. 297-313
    • Shenkin, S.P.1
  • 25
    • 1542358841 scopus 로고    scopus 로고
    • Kinomics-structural biology and chemogenomics of kinase inhibitors and targets
    • Vieth,M. et al. (2004) Kinomics-structural biology and chemogenomics of kinase inhibitors and targets. Biochim. Biophys. Acta, 1697, 243-257.
    • (2004) Biochim. Biophys. Acta , vol.1697 , pp. 243-257
    • Vieth, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.