메뉴 건너뛰기




Volumn 6, Issue 3, 2007, Pages 1139-1144

Enhancement of the efficiency of phosphoproteomic identification by removing phosphates after phosphopeptide enrichment

Author keywords

Immobilized metal affinity chromatography (IMAC) titanium oxide (TiO2); Mass spectrometry; Phosphoproteomics; Phosphorylation

Indexed keywords

ALKALINE PHOSPHATASE; PHOSPHATE; PHOSPHOPEPTIDE; SERINE; TITANIUM DIOXIDE; TYROSINE;

EID: 33947575134     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060452w     Document Type: Article
Times cited : (68)

References (29)
  • 1
    • 20444383859 scopus 로고    scopus 로고
    • Protein phosphorylation in signaling - 50 years and counting
    • Pawson, T.; Scott, J. D. Protein phosphorylation in signaling - 50 years and counting. Trends Biochem. Sci. 2005, 30, 286-290.
    • (2005) Trends Biochem. Sci , vol.30 , pp. 286-290
    • Pawson, T.1    Scott, J.D.2
  • 2
    • 29144510554 scopus 로고    scopus 로고
    • Substrate specificity of protein kinases and computational prediction of substrates
    • Kobe, B.; Kampmann, T.; Forwood, J. K.; Listwan, P.; Brinkworth, R. I. Substrate specificity of protein kinases and computational prediction of substrates. Biochim. Biophys. Acta 2005, 1754, 200-209.
    • (2005) Biochim. Biophys. Acta , vol.1754 , pp. 200-209
    • Kobe, B.1    Kampmann, T.2    Forwood, J.K.3    Listwan, P.4    Brinkworth, R.I.5
  • 3
    • 0032577261 scopus 로고    scopus 로고
    • Protein phosphorylation: Technologies for the identification of phosphoamino acids
    • Yan, J. X.; Packer, N. H.; Gooley, A. A.; Williams, K. L. Protein phosphorylation: technologies for the identification of phosphoamino acids. J. Chromatogr,. A 1998, 808, 23-41.
    • (1998) J. Chromatogr,. A , vol.808 , pp. 23-41
    • Yan, J.X.1    Packer, N.H.2    Gooley, A.A.3    Williams, K.L.4
  • 4
    • 0018869832 scopus 로고
    • Protein phosphorylation: Quantitative analysis in vivo and in intact cell systems
    • Manning, D. R.; DiSalvo, J.; Stull, J. T. Protein phosphorylation: quantitative analysis in vivo and in intact cell systems. Mol. Cell. Endocrinol. 1980, 19, 1-19.
    • (1980) Mol. Cell. Endocrinol , vol.19 , pp. 1-19
    • Manning, D.R.1    DiSalvo, J.2    Stull, J.T.3
  • 5
    • 0034602654 scopus 로고    scopus 로고
    • Analysis of receptor signaling pathways by mass spectrometry: Identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors
    • Pandey, A.; et al. Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 179-184.
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 179-184
    • Pandey, A.1
  • 6
    • 0031856746 scopus 로고    scopus 로고
    • Electrophoresis combined with novel mass spectrometry techniques: Powerful tools for the analysis of proteins and proteomes
    • Figeys, D.; et al. Electrophoresis combined with novel mass spectrometry techniques: powerful tools for the analysis of proteins and proteomes. Electrophoresis 1998, 19, 1811-1818.
    • (1998) Electrophoresis , vol.19 , pp. 1811-1818
    • Figeys, D.1
  • 7
    • 4344574540 scopus 로고    scopus 로고
    • Large-scale characterization of HeLa cell nuclear phosphoproteins
    • Beausoleil, S. A.; et al. Large-scale characterization of HeLa cell nuclear phosphoproteins. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12130-12135.
    • (2004) Proc. Natl. Acad. Sci. U.S.A , vol.101 , pp. 12130-12135
    • Beausoleil, S.A.1
  • 8
    • 0035067251 scopus 로고    scopus 로고
    • Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
    • Oda, Y.; Nagasu, T.; Chait, B. T. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat. Biotechnol. 2001, 19, 379-382.
    • (2001) Nat. Biotechnol , vol.19 , pp. 379-382
    • Oda, Y.1    Nagasu, T.2    Chait, B.T.3
  • 9
    • 27744563093 scopus 로고    scopus 로고
    • State-of-the-art in phosphoproteomics
    • Reinders, J.; Sickmann, A. State-of-the-art in phosphoproteomics. Proteomics 2005, 5, 4052-4061.
    • (2005) Proteomics , vol.5 , pp. 4052-4061
    • Reinders, J.1    Sickmann, A.2
  • 10
    • 27744469683 scopus 로고    scopus 로고
    • ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer
    • Zhang, N.; et al. ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer. Proteomics 2005, 5, 4096-4106.
    • (2005) Proteomics , vol.5 , pp. 4096-4106
    • Zhang, N.1
  • 11
    • 20844457100 scopus 로고    scopus 로고
    • Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
    • Chen, Y.; Kwon, S. W.; Kim, S. C.; Zhao, Y. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. J. Proteome Res. 2005, 4, 998-1005.
    • (2005) J. Proteome Res , vol.4 , pp. 998-1005
    • Chen, Y.1    Kwon, S.W.2    Kim, S.C.3    Zhao, Y.4
  • 12
    • 21044459357 scopus 로고    scopus 로고
    • A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results
    • Weatherly, D. B.; et al. A Heuristic method for assigning a false-discovery rate for protein identifications from Mascot database search results. Mol. Cell. Proteomics 2005, 4, 762-772.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 762-772
    • Weatherly, D.B.1
  • 13
    • 5444256180 scopus 로고    scopus 로고
    • Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-beta-D-maltoside as an additive for gel-based membrane proteomics
    • Katayama, H.; et al. Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-beta-D-maltoside as an additive for gel-based membrane proteomics. Rapid Commun. Mass Spectrom. 2004, 18, 2388-2394.
    • (2004) Rapid Commun. Mass Spectrom , vol.18 , pp. 2388-2394
    • Katayama, H.1
  • 14
    • 23744460968 scopus 로고    scopus 로고
    • Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis
    • Kokubu, M.; Ishihama, Y.; Sato, T.; Nagasu, T.; Oda, Y. Specificity of immobilized metal affinity-based IMAC/C18 tip enrichment of phosphopeptides for protein phosphorylation analysis. Anal. Chem. 2005, 77, 5144-5154.
    • (2005) Anal. Chem , vol.77 , pp. 5144-5154
    • Kokubu, M.1    Ishihama, Y.2    Sato, T.3    Nagasu, T.4    Oda, Y.5
  • 15
    • 0037032628 scopus 로고    scopus 로고
    • Microcolumns with self-assembled particle frits for proteomics
    • Ishihama, Y.; Rappsilber, J.; Andersen, J. S.; Mann, M. Microcolumns with self-assembled particle frits for proteomics. J. Chromatogr, A 2002, 979, 233-239.
    • (2002) J. Chromatogr, A , vol.979 , pp. 233-239
    • Ishihama, Y.1    Rappsilber, J.2    Andersen, J.S.3    Mann, M.4
  • 16
    • 0036198435 scopus 로고    scopus 로고
    • Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
    • Ficarro, S. B.; et al. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 2002, 20, 301-305.
    • (2002) Nat. Biotechnol , vol.20 , pp. 301-305
    • Ficarro, S.B.1
  • 17
    • 1842427490 scopus 로고    scopus 로고
    • Chemo-affinity of titania for the column-switching HPLC analysis of phosphopeptides
    • Sano, A.; Nakamura, H. Chemo-affinity of titania for the column-switching HPLC analysis of phosphopeptides. Anal. Sci. 2004, 20, 565-566.
    • (2004) Anal. Sci , vol.20 , pp. 565-566
    • Sano, A.1    Nakamura, H.2
  • 18
    • 24944519450 scopus 로고    scopus 로고
    • Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
    • Larsen, M. R.; Thingholm, T. E.; Jensen, O. N.; Roepstorff, P.; Jorgensen, T. J. Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol. Cell. Proteomics 2005, 4, 873-886.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 873-886
    • Larsen, M.R.1    Thingholm, T.E.2    Jensen, O.N.3    Roepstorff, P.4    Jorgensen, T.J.5
  • 19
    • 0037962064 scopus 로고    scopus 로고
    • Pseudo-MS3 in a MALDI orthogonal quadrupole-time of flight mass spectrometer
    • Raska, C. S.; et al. Pseudo-MS3 in a MALDI orthogonal quadrupole-time of flight mass spectrometer. J. Am. Soc. Mass Spectrom. 2002, 13, 1034-1041.
    • (2002) J. Am. Soc. Mass Spectrom , vol.13 , pp. 1034-1041
    • Raska, C.S.1
  • 20
    • 0028362020 scopus 로고
    • An approach to locate phosphorylation sites in a phosphoprotein: Mass mapping by combining specific enzymatic degradation with matrix-assisted laser desorption/ionization mass spectrometry
    • Liao, P. C.; Leykam, J.; Andrews, P. C.; Gage, D. A.; Allison, J. An approach to locate phosphorylation sites in a phosphoprotein: mass mapping by combining specific enzymatic degradation with matrix-assisted laser desorption/ionization mass spectrometry. Anal. Biochem. 1994, 219, 9-20.
    • (1994) Anal. Biochem , vol.219 , pp. 9-20
    • Liao, P.C.1    Leykam, J.2    Andrews, P.C.3    Gage, D.A.4    Allison, J.5
  • 21
    • 0032523409 scopus 로고    scopus 로고
    • Identification of phosphorylation sites in proteins separated by polyacrylamide gel electrophoresis
    • Zhang, X.; et al., Identification of phosphorylation sites in proteins separated by polyacrylamide gel electrophoresis. Anal. Chem. 1998, 70, 2050-2059.
    • (1998) Anal. Chem , vol.70 , pp. 2050-2059
    • Zhang, X.1
  • 22
    • 0035258256 scopus 로고    scopus 로고
    • Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis
    • Stensballe, A.; Andersen, S.; Jensen, O. N. Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis. Proteomics 2001, 1, 207-222.
    • (2001) Proteomics , vol.1 , pp. 207-222
    • Stensballe, A.1    Andersen, S.2    Jensen, O.N.3
  • 23
    • 26844468117 scopus 로고    scopus 로고
    • Phosphatase-directed phosphorylation-site determination: A synthesis of methods for the detection and identification of phosphopeptides
    • Torres, M. P.; Thapar, R.; Marzluff, W. F.; Borchers, C. H. Phosphatase-directed phosphorylation-site determination: a synthesis of methods for the detection and identification of phosphopeptides. J. Proteome Res. 2005, 4, 1628-1635.
    • (2005) J. Proteome Res , vol.4 , pp. 1628-1635
    • Torres, M.P.1    Thapar, R.2    Marzluff, W.F.3    Borchers, C.H.4
  • 24
    • 0000109995 scopus 로고
    • Transforming gene product of Rous sarcoma virus phosphorylates tyrosine
    • Hunter, T.; Sefton, B. M. Transforming gene product of Rous sarcoma virus phosphorylates tyrosine. Proc. Natl. Acad. Sci. U.S.A. 1980, 77, 1311-1315.
    • (1980) Proc. Natl. Acad. Sci. U.S.A , vol.77 , pp. 1311-1315
    • Hunter, T.1    Sefton, B.M.2
  • 25
    • 33750456519 scopus 로고    scopus 로고
    • Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
    • Olsen, J. V.; et al. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127, 635-648.
    • (2006) Cell , vol.127 , pp. 635-648
    • Olsen, J.V.1
  • 26
    • 0035870175 scopus 로고    scopus 로고
    • Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics
    • Shen, Y.; et al. Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics. Anal. Chem. 2001, 73, 1766-1775.
    • (2001) Anal. Chem , vol.73 , pp. 1766-1775
    • Shen, Y.1
  • 27
    • 31644439146 scopus 로고    scopus 로고
    • Phosphorylation analysis by mass spectrometry: Myths, facts, and the consequences for qualitative and quantitative measurements
    • Steen, H.; Jebanathirajah, J. A.; Rush, J.; Morrice, N.; Kirschner, M. W. Phosphorylation analysis by mass spectrometry: Myths, facts, and the consequences for qualitative and quantitative measurements. Mol. Cell. Proteomics 2006, 5, 172-181.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 172-181
    • Steen, H.1    Jebanathirajah, J.A.2    Rush, J.3    Morrice, N.4    Kirschner, M.W.5
  • 29
    • 22844436250 scopus 로고    scopus 로고
    • Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
    • Ishihama, Y.; et al. Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nat. Biotechnol. 2005, 23, 617-621.
    • (2005) Nat. Biotechnol , vol.23 , pp. 617-621
    • Ishihama, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.