PSSARD (2.0): A database server for making flexible queries relating amino acid sequences to main-chain secondary structure conformations for proteins of known three-dimensional structure and certain useful applications

International Journal of Biological Macromolecules

Volumn 41, Issue 1, 2007, Pages 109-113

  Sridhar, Settu ^a   Babu, A V N ^a   Guruprasad, Kunchur ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Protein Data Bank; Protein fold and structure prediction; Protein modeling and design; Protein sequence structure analysis; Structural motifs

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; INFORMATION PROCESSING; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DATA BANK; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRUCTURAL BIOINFORMATICS; STRUCTURAL PROTEOMICS;

EID: 33947525545     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2006.10.006     Document Type: Article

References (25)

1. Sussman J.L., Lin D., Jiang J., Manning N.O., Prilusky J., Ritter O., and Abola E.E. Acta. Crystallogr. D: Biol. Crystallogr. 54 (1998) 1078-1084
2. Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. Nucl. Acids Res. 28 (2000) 235-242
3. Bairoch A., and Boeckmann B. Nucl. Acids Res. 19 (1991) 2247-2249
4. Stoehr P.J., and Cameron G.N. Nucl. Acids Res. 19 (1991) 2227-2230
5. Thornton J.M., and Gardner S.P. Trends Biochem. Sci. 14 (1989) 300-304
6. Islam S.A., and Sternberg M.J.E. Prot. Eng. 2 (1989) 431-442
7. Huysmans M., Richelle J., and Wodak S.J. Proteins 11 (1991) 59-76
8. Suzuki H., Kolaskar A.S., Samuel S.L., Otsuka J., and Tsugita A. Protein Seq. Data Anal. 4 (1991) 97-104
9. Gardner S., and Thornton J.M. Acta Crystallogr. D: Biol. Crystallogr. 54 (1998) 1071-1077
10. Sali A., Overington J.P., Johnson M.S., and Blundell T.L. Trends Biochem. Sci. 15 (1990) 235-240
11. Laskowski R.A. Nucl. Acids Res. 29 (2001) 221-222
12. Kabsch W., and Sander C. Biopolymers 22 (1983) 2577-2637
13. Murzin A., Brenner S.E., Hubbard T., and Chothia C. J. Mol. Biol. 247 (1995) 536-540
14. Orengo C.A., Michie A.D., Jones S., Jones D.T., Swindells M.B., and Thornton J.M. Structure 5 (1997) 1093-1108
15. Mizuguchi K., Deane C.M., Blundell T.L., and Overington J.P. Protein Sci. 7 (1998) 2469-2471
16. Sowdhamini R., Burke D.F., Huang J.-F., Mizuguchi K., Nagarajaram H.A., Srinivasan N., Steward R.E., and Blundell T.L. Structure 6 (1998) 1087-1094
17. Mizuguchi K., Deane C.M., Johnson M.S., Blundell T.L., and Overington J.P. Bioinformatics 14 (1998) 617-623
18. Sander C., and Schneider R. Proteins-Struct. Funct. Genet. 9 (1991) 56-68
19. Holm L., and Sander C. Nucl. Acids Res. 22 (1994) 3600-3609
20. Siddiqui A.S., Dengler U., and Barton G.J. Bioinformatics 17 (2001) 200-201
21. Guruprasad K., Prasad M.S., and Kumar G.R. Bioinformatics 16 (2000) 372-375
22. Hutchinson E.G., and Thornton J.M. Protein Sci. 5 (1996) 212-220
23. Golovin A., Oldfield T.J., Tate J.G., Velankar S., Barton G.J., Boutselakis H., Dimitropoulos D., Fillon J., Hussain A., Ionides J.M., John M., Keller P.A., Krissinel E., McNeil P., Naim A., Newman R., Pajon A., Pineda J., Rachedi A., Copeland J., Sitnov A., Sobhany S., Suarez-Uruena A., Swaminathan G.J., Tagari M., Tromm S., Vranken W., and Henrick K. Nucl. Acids Res. 32 (2004) D211-D216
24. Guruprasad K., Srikanth K., and Babu A.V.N. Int. J. Biol. Macromol. 36 (2005) 259-262
25. Kleiger G., and Eisenberg D. J Mol. Biol. 323 (2002) 69-76