-
1
-
-
0037449738
-
Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 and DNA2
-
Ayyagari, R., X. V. Gomes, D. A. Gordenin, and P. M. J. Burgers. 2003. Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 and DNA2. J. Biol. Chem. 278:1618-1625.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 1618-1625
-
-
Ayyagari, R.1
Gomes, X.V.2
Gordenin, D.A.3
Burgers, P.M.J.4
-
2
-
-
0036861729
-
Dissecting the fidelity of bacteriophage RB69 DNA polymerase: Site-specific modulation of fidelity by polymerase accessory proteins
-
Bebenek, A., G. T. Carver, H. K. Dressman, F. A. Kadyrov, J. K. Haseman, V. Petrov, W. H. Konigsberg, J. D. Karam, and J. W. Drake. 2002. Dissecting the fidelity of bacteriophage RB69 DNA polymerase: site-specific modulation of fidelity by polymerase accessory proteins. Genetics 162:1003-1018.
-
(2002)
Genetics
, vol.162
, pp. 1003-1018
-
-
Bebenek, A.1
Carver, G.T.2
Dressman, H.K.3
Kadyrov, F.A.4
Haseman, J.K.5
Petrov, V.6
Konigsberg, W.H.7
Karam, J.D.8
Drake, J.W.9
-
3
-
-
18844409530
-
Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 polymerase in a sequence-specific manner, sometime enhancing and sometimes compromising accuracy
-
Bebenek, A., G. T. Carver, F. A. Kadyrov, G. E. Kissking, and J. W. Drake. 2005. Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 polymerase in a sequence-specific manner, sometime enhancing and sometimes compromising accuracy. Genetics 169:1815-1824.
-
(2005)
Genetics
, vol.169
, pp. 1815-1824
-
-
Bebenek, A.1
Carver, G.T.2
Kadyrov, F.A.3
Kissking, G.E.4
Drake, J.W.5
-
4
-
-
0038322040
-
The herpes simplex virus type 1 DNA polymerase processivity factor increases fidelity without altering pre-steady-state rate constants for polymerization or excision
-
Chaudhuri, M., L. Song, and D. S. Parris. 2003. The herpes simplex virus type 1 DNA polymerase processivity factor increases fidelity without altering pre-steady-state rate constants for polymerization or excision. J. Biol. Chem. 278:8996-9004.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 8996-9004
-
-
Chaudhuri, M.1
Song, L.2
Parris, D.S.3
-
5
-
-
0032741610
-
Saccharomyces cerevisiae pol30 (proliferating cell nuclear antigen) mutations impair replication fidelity and mismatch repair
-
Chen, C., B. J. Merrill, P. J. Lau, C. Holm, and R. D. Kolodner. 1999. Saccharomyces cerevisiae pol30 (proliferating cell nuclear antigen) mutations impair replication fidelity and mismatch repair. Mol. Cell. Biol. 19:7801-7815.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 7801-7815
-
-
Chen, C.1
Merrill, B.J.2
Lau, P.J.3
Holm, C.4
Kolodner, R.D.5
-
6
-
-
0028826076
-
Mutations that specifically impair the DNA binding activity of the herpes simplex virus protein UL42
-
Chow, C. S., and D. M. Coen. 1995. Mutations that specifically impair the DNA binding activity of the herpes simplex virus protein UL42. J. Virol. 69:6965-6971.
-
(1995)
J. Virol
, vol.69
, pp. 6965-6971
-
-
Chow, C.S.1
Coen, D.M.2
-
7
-
-
0030857979
-
Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase 8 and DNA polymerase ε
-
Eissenberg, J. C., R. Ayyagari, X. V. Gomes, and P. M. Burgers. 1997. Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase 8 and DNA polymerase ε. Mol. Cell. Biol. 17:6367-6378.
-
(1997)
Mol. Cell. Biol
, vol.17
, pp. 6367-6378
-
-
Eissenberg, J.C.1
Ayyagari, R.2
Gomes, X.V.3
Burgers, P.M.4
-
8
-
-
33749996082
-
RPA and PCNA suppress formation of large deletion errors by yeast DNA polymerase 8
-
Fortune, J. M., C. M. Stith, G. E. Kissling, P. M. J. Burgers, and T. A. Kunkel. 2006. RPA and PCNA suppress formation of large deletion errors by yeast DNA polymerase 8. Nucleic Acids Res. 34:4335-4341.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4335-4341
-
-
Fortune, J.M.1
Stith, C.M.2
Kissling, G.E.3
Burgers, P.M.J.4
Kunkel, T.A.5
-
9
-
-
0028342556
-
Interaction of herpes simplex virus type 1 DNA polymerase and the UL42 accessory protein with a model primer template
-
Gottlieb, J., and M. D. Challberg. 1994. Interaction of herpes simplex virus type 1 DNA polymerase and the UL42 accessory protein with a model primer template. J. Virol. 68:4937-4945.
-
(1994)
J. Virol
, vol.68
, pp. 4937-4945
-
-
Gottlieb, J.1
Challberg, M.D.2
-
10
-
-
0025253822
-
The herpes simplex virus type 1 UL42 gene product: A subunit of DNA polymerase that functions to increase processivity
-
Gottlieb, J., A. I. Marcy, D. M. Coen, and M. D. Challberg. 1990. The herpes simplex virus type 1 UL42 gene product: a subunit of DNA polymerase that functions to increase processivity. J. Virol. 64:5976-5987.
-
(1990)
J. Virol
, vol.64
, pp. 5976-5987
-
-
Gottlieb, J.1
Marcy, A.I.2
Coen, D.M.3
Challberg, M.D.4
-
11
-
-
0033957787
-
Sliding clamps: A (tail)ored fit
-
Hingorani, M. M., and M. Donnell. 2000. Sliding clamps: a (tail)ored fit. Curr. Biol. 10:R25-R29.
-
(2000)
Curr. Biol
, vol.10
-
-
Hingorani, M.M.1
Donnell, M.2
-
12
-
-
0032989101
-
Effects of exonuclease activity and nucleotide selectivity of the herpes simplex virus DNA polymerase on the fidelity of DNA replication in vivo
-
Hwang, Y. T., B.-Y. Liu, C.-Y. Hong, E. J. Shillitoe, and C. B. C. Hwang. 1999. Effects of exonuclease activity and nucleotide selectivity of the herpes simplex virus DNA polymerase on the fidelity of DNA replication in vivo. J. Virol. 73:5326-5332.
-
(1999)
J. Virol
, vol.73
, pp. 5326-5332
-
-
Hwang, Y.T.1
Liu, B.-Y.2
Hong, C.-Y.3
Shillitoe, E.J.4
Hwang, C.B.C.5
-
13
-
-
0037455584
-
Thymidine kinase of herpes simplex virus type 1 strain KOS lacks mutator activity
-
Hwang, Y. T., Y. A. Wang, Q. Lu, and C. B. Hwang. 2003. Thymidine kinase of herpes simplex virus type 1 strain KOS lacks mutator activity. Virology 305:388-396.
-
(2003)
Virology
, vol.305
, pp. 388-396
-
-
Hwang, Y.T.1
Wang, Y.A.2
Lu, Q.3
Hwang, C.B.4
-
14
-
-
33646050023
-
Herpes simplex virus type 1 recombinants without the oriL sequence replicate DNA with increased fidelity
-
Jiang, C., Y. T. Hwang, and C. B.-C. Hwang. 2006. Herpes simplex virus type 1 recombinants without the oriL sequence replicate DNA with increased fidelity. Virology 347:277-285.
-
(2006)
Virology
, vol.347
, pp. 277-285
-
-
Jiang, C.1
Hwang, Y.T.2
Hwang, C.B.-C.3
-
15
-
-
0037449727
-
Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3′-5′-exonuclease activities of Pol delta in the creation of a ligatable nick
-
Jin, Y. H., R. Ayyagari, M. A. Resnick, D. A. Gordenin, and P. M. J. Burgers. 2003. Okazaki fragment maturation in yeast. II. Cooperation between the polymerase and 3′-5′-exonuclease activities of Pol delta in the creation of a ligatable nick. J. Biol. Chem. 278:1626-1633.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 1626-1633
-
-
Jin, Y.H.1
Ayyagari, R.2
Resnick, M.A.3
Gordenin, D.A.4
Burgers, P.M.J.5
-
16
-
-
0035942104
-
The 3′right-arrow5′ exonuclease of DNA polymerase delta can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability
-
Jin, Y. H., R. Obert, P. M. J. Burgers, T. A. Kunkel, M. A. Resnick, and D. A. Gordenin. 2001. The 3′right-arrow5′ exonuclease of DNA polymerase delta can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc. Natl. Acad. Sci. USA 98:5122-5127.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 5122-5127
-
-
Jin, Y.H.1
Obert, R.2
Burgers, P.M.J.3
Kunkel, T.A.4
Resnick, M.A.5
Gordenin, D.A.6
-
17
-
-
0025957442
-
Isolation of a herpes simplex virus type 1 mutant deleted for the essential UL42 gene and characterization of its null phenotype
-
Johnson, P. A., M. G. Best, T. Friedmann, and D. S. Parris. 1991. Isolation of a herpes simplex virus type 1 mutant deleted for the essential UL42 gene and characterization of its null phenotype. J. Virol. 65:700-710.
-
(1991)
J. Virol
, vol.65
, pp. 700-710
-
-
Johnson, P.A.1
Best, M.G.2
Friedmann, T.3
Parris, D.S.4
-
18
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
Krishna, T. S. R., X.-P. Kong, S. Gary, P. M. Burgers, and J. Kuriyan. 1994. Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.S.R.1
Kong, X.-P.2
Gary, S.3
Burgers, P.M.4
Kuriyan, J.5
-
19
-
-
0036785567
-
Isolation and characterization of new proliferating cell nuclear antigen (POL30) mutator mutants that are defective in DNA mismatch repair
-
Lau, P. J., H. Flores-Rozas, and R. D. Kolodner. 2002. Isolation and characterization of new proliferating cell nuclear antigen (POL30) mutator mutants that are defective in DNA mismatch repair. Mol. Cell. Biol. 22:6669-6680.
-
(2002)
Mol. Cell. Biol
, vol.22
, pp. 6669-6680
-
-
Lau, P.J.1
Flores-Rozas, H.2
Kolodner, R.D.3
-
21
-
-
0023899276
-
The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1
-
McGeoch, D. J., M. A. Dalrymple, A. J. Dasison, A. Dolan, M. C. Frame, D. McNab, L. J. Perry, J. E. Scott, and P. Taylor. 1988. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J. Gen. Virol. 69:1531-1574.
-
(1988)
J. Gen. Virol
, vol.69
, pp. 1531-1574
-
-
McGeoch, D.J.1
Dalrymple, M.A.2
Dasison, A.J.3
Dolan, A.4
Frame, M.C.5
McNab, D.6
Perry, L.J.7
Scott, J.E.8
Taylor, P.9
-
22
-
-
0034628915
-
Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage
-
Moarefi, I., D. Jeruzalmi, J. Turner, M. Donnell, and J. Kuriyan. 2000. Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage. J. Mol. Biol. 296:1215-1223.
-
(2000)
J. Mol. Biol
, vol.296
, pp. 1215-1223
-
-
Moarefi, I.1
Jeruzalmi, D.2
Turner, J.3
Donnell, M.4
Kuriyan, J.5
-
23
-
-
0032005707
-
Interaction between the herpes simplex virus type 1 origin-binding and DNA polymerase accessory proteins
-
Monahan, S. J., L. A. Grinstead, W. Olivieri, and D. S. Parris. 1998. Interaction between the herpes simplex virus type 1 origin-binding and DNA polymerase accessory proteins. Virology 241:122-130.
-
(1998)
Virology
, vol.241
, pp. 122-130
-
-
Monahan, S.J.1
Grinstead, L.A.2
Olivieri, W.3
Parris, D.S.4
-
24
-
-
0029906624
-
Proliferating cell nuclear antigen promotes misincorporation catalyzed by calf thymus DNA polymerase delta
-
Mozzherin, D. J., M. McConnell, M. V. Jasko, A. A. Krayevsky, C.-K. Tan, K. M. Downey, and P. A. Fisher. 1996. Proliferating cell nuclear antigen promotes misincorporation catalyzed by calf thymus DNA polymerase delta. J. Biol. Chem. 271:31711-31717.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 31711-31717
-
-
Mozzherin, D.J.1
McConnell, M.2
Jasko, M.V.3
Krayevsky, A.A.4
Tan, C.-K.5
Downey, K.M.6
Fisher, P.A.7
-
25
-
-
0030986238
-
Proliferating cell nuclear antigen promotes DNA synthesis past template lesions by mammalian DNA polymerase delta
-
Mozzherin, D. J., S. Shibutani, C.-K. Tan, K. M. Downey, and P. A. Fisher. 1997. Proliferating cell nuclear antigen promotes DNA synthesis past template lesions by mammalian DNA polymerase delta. Proc. Natl. Acad. Sci. USA 94:6126-6131.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6126-6131
-
-
Mozzherin, D.J.1
Shibutani, S.2
Tan, C.-K.3
Downey, K.M.4
Fisher, P.A.5
-
26
-
-
0026715131
-
PCNA-induced DNA synthesis past cis-syn and trans-syn-L thymine dimers by calf thymus DNA polymerase 8 in vitro
-
O'Day, C., P. M. J. Burgers, and J.-S. Taylor. 1992. PCNA-induced DNA synthesis past cis-syn and trans-syn-L thymine dimers by calf thymus DNA polymerase 8 in vitro. Nucleic Acids Res. 20:5403-5406.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5403-5406
-
-
O'Day, C.1
Burgers, P.M.J.2
Taylor, J.-S.3
-
27
-
-
0023831378
-
Identification of the gene encoding the 65-kilodalton DNA-binding protein of herpes simplex virus type 1
-
Parris, D. S., A. Cross, L. Haarr, A. Orr, M. C. Frame, M. Murphy, D. J. McGeoch, and H. S. Marsden. 1988. Identification of the gene encoding the 65-kilodalton DNA-binding protein of herpes simplex virus type 1. J. Virol. 62:818-825.
-
(1988)
J. Virol
, vol.62
, pp. 818-825
-
-
Parris, D.S.1
Cross, A.2
Haarr, L.3
Orr, A.4
Frame, M.C.5
Murphy, M.6
McGeoch, D.J.7
Marsden, H.S.8
-
28
-
-
0017773789
-
Identification of the herpes simplex virus DNA polymerase gene
-
Purifoy, D. J. M., R. B. Lewis, and K. L. Powell. 1977. Identification of the herpes simplex virus DNA polymerase gene. Nature 269:621-623.
-
(1977)
Nature
, vol.269
, pp. 621-623
-
-
Purifoy, D.J.M.1
Lewis, R.B.2
Powell, K.L.3
-
29
-
-
0347627532
-
The herpes simplex virus processivity factor, UL42, binds DNA as a monomer
-
Randell, J. C., and D. M. Coen. 2004. The herpes simplex virus processivity factor, UL42, binds DNA as a monomer. J. Mol. Biol. 335:409-413.
-
(2004)
J. Mol. Biol
, vol.335
, pp. 409-413
-
-
Randell, J.C.1
Coen, D.M.2
-
30
-
-
0034753799
-
Linear diffusion on DNA despite high-affinity binding by a DNA polymerase processivity factor
-
Randell, J. C., and D. M. Coen. 2001. Linear diffusion on DNA despite high-affinity binding by a DNA polymerase processivity factor. Mol. Cell 8:911-920.
-
(2001)
Mol. Cell
, vol.8
, pp. 911-920
-
-
Randell, J.C.1
Coen, D.M.2
-
31
-
-
24644512131
-
Effects of substitutions of arginine residues on the basic surface of herpes simplex virus UL42 support a role for DNA binding in processive DNA synthesis
-
Randell, J. C. W., G. Komazin, C. Jiang, C. B. C. Hwang, and D. M. Coen. 2005. Effects of substitutions of arginine residues on the basic surface of herpes simplex virus UL42 support a role for DNA binding in processive DNA synthesis. J. Virol. 79:12025-12034.
-
(2005)
J. Virol
, vol.79
, pp. 12025-12034
-
-
Randell, J.C.W.1
Komazin, G.2
Jiang, C.3
Hwang, C.B.C.4
Coen, D.M.5
-
32
-
-
2442574958
-
Contribution of the 3′- to 5′-exonuclease activity of herpes simplex virus type 1 DNA polymerase to the fidelity of DNA synthesis
-
Song, L., M. Chaudhuri, C. W. Knopf, and D. S. Parris. 2004. Contribution of the 3′- to 5′-exonuclease activity of herpes simplex virus type 1 DNA polymerase to the fidelity of DNA synthesis. J. Biol. Chem. 279:18535-18543.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 18535-18543
-
-
Song, L.1
Chaudhuri, M.2
Knopf, C.W.3
Parris, D.S.4
-
33
-
-
0037168545
-
The patterns of accumulation of cellular RNAs in cells infected with a wild-type and a mutant herpes simplex virus 1 lacking the virion host shutoff gene
-
Taddeo, B., A. Esclatine, and B. Roizman. 2002. The patterns of accumulation of cellular RNAs in cells infected with a wild-type and a mutant herpes simplex virus 1 lacking the virion host shutoff gene. Proc. Natl. Acad. Sci. USA 99:17031-17036.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 17031-17036
-
-
Taddeo, B.1
Esclatine, A.2
Roizman, B.3
-
34
-
-
2442653990
-
Proteomics of herpes simplex virus replication compartments: Association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8
-
Taylor, T. J., and D. M. Knipe. 2004. Proteomics of herpes simplex virus replication compartments: association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8. J. Virol. 78:5856-5866.
-
(2004)
J. Virol
, vol.78
, pp. 5856-5866
-
-
Taylor, T.J.1
Knipe, D.M.2
-
35
-
-
0242576925
-
Functional interaction between the herpes simplex virus type 1 polymerase processivity factor and origin-binding proteins: Enhancement of UL9 helicase activity
-
Trego, K. S., and D. S. Parris. 2003. Functional interaction between the herpes simplex virus type 1 polymerase processivity factor and origin-binding proteins: enhancement of UL9 helicase activity. J. Virol. 77:12646-12659.
-
(2003)
J. Virol
, vol.77
, pp. 12646-12659
-
-
Trego, K.S.1
Parris, D.S.2
-
36
-
-
0030271999
-
Requirement for PCNA in DNA mismatch repair at a step preceding DNA resynthesis
-
Umar, A., A. B. Buermeyer, J. A. Simon, D. C. Thomas, A. B. Clark, R. M. Liskay, and T. A. Kunkel. 1996. Requirement for PCNA in DNA mismatch repair at a step preceding DNA resynthesis. Cell 87:65-73.
-
(1996)
Cell
, vol.87
, pp. 65-73
-
-
Umar, A.1
Buermeyer, A.B.2
Simon, J.A.3
Thomas, D.C.4
Clark, A.B.5
Liskay, R.M.6
Kunkel, T.A.7
-
37
-
-
0032888971
-
Herpes simplex virus processivity factor UL42 imparts increased DNA-binding specificity to the viral DNA polymerase and decreased dissociation from primer-template without reducing the elongation rate
-
Weisshart, K., C. S. Chow, and D. M. Coen. 1999. Herpes simplex virus processivity factor UL42 imparts increased DNA-binding specificity to the viral DNA polymerase and decreased dissociation from primer-template without reducing the elongation rate. J. Virol. 73:55-66.
-
(1999)
J. Virol
, vol.73
, pp. 55-66
-
-
Weisshart, K.1
Chow, C.S.2
Coen, D.M.3
-
38
-
-
33947355192
-
HSV-1 DNA replication
-
R. M. Sandri-Goldin ed, Caister Academic Press, Norfolk, United Kingdom
-
Weller, S. K. 2006. HSV-1 DNA replication, p. 85-104. In R. M. Sandri-Goldin (ed.), Alphaherpesviruses: pathogenesis, molecular biology and infection control. Caister Academic Press, Norfolk, United Kingdom.
-
(2006)
Alphaherpesviruses: Pathogenesis, molecular biology and infection control
, pp. 85-104
-
-
Weller, S.K.1
-
39
-
-
3242886313
-
Homologous recombination-mediated double-strand break repair
-
Wyman, C., D. Ristic, and R. Kanaar. 2004. Homologous recombination-mediated double-strand break repair. DNA Repair 3:827-833.
-
(2004)
DNA Repair
, vol.3
, pp. 827-833
-
-
Wyman, C.1
Ristic, D.2
Kanaar, R.3
-
40
-
-
0141569285
-
3′ to 5′ exonuclease activity of herpes simplex virus type 1 DNA polymerase modulates its strand displacement activity
-
Zhu, Y., K. S. Trego, L. Song, and D. S. Parris. 2003. 3′ to 5′ exonuclease activity of herpes simplex virus type 1 DNA polymerase modulates its strand displacement activity. J. Virol. 77:10147-10153.
-
(2003)
J. Virol
, vol.77
, pp. 10147-10153
-
-
Zhu, Y.1
Trego, K.S.2
Song, L.3
Parris, D.S.4
-
41
-
-
0033867542
-
The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase
-
Zuccola, H. J., D. J. Filman, D. M. Coen, and J. M. Hogle. 2000. The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase. Mol. Cell 5:267-278.
-
(2000)
Mol. Cell
, vol.5
, pp. 267-278
-
-
Zuccola, H.J.1
Filman, D.J.2
Coen, D.M.3
Hogle, J.M.4
|