메뉴 건너뛰기




Volumn 34, Issue 16, 2006, Pages 4335-4341

RPA and PCNA suppress formation of large deletion errors by yeast DNA polymerase δ

Author keywords

[No Author keywords available]

Indexed keywords

CYCLINE; DNA DIRECTED DNA POLYMERASE DELTA; REPLICATION PROTEIN A; SINGLE STRANDED DNA BINDING PROTEIN;

EID: 33749996082     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl403     Document Type: Article
Times cited : (60)

References (40)
  • 1
    • 18044384092 scopus 로고    scopus 로고
    • DNA polymerases that propagate the eukaryotic DNA replication fork
    • Garg,P. and Burgers,P. (2005) DNA polymerases that propagate the eukaryotic DNA replication fork. Crit. Rev. Biochem. Mol. Biol., 40, 115-128.
    • (2005) Crit. Rev. Biochem. Mol. Biol. , vol.40 , pp. 115-128
    • Garg, P.1    Burgers, P.2
  • 2
    • 10044241865 scopus 로고    scopus 로고
    • Functions of DNA polymerases
    • Bebenek,K. and Kunkel,T.A. (2004) Functions of DNA polymerases. Adv. Protein Chem., 69, 137-165.
    • (2004) Adv. Protein Chem. , vol.69 , pp. 137-165
    • Bebenek, K.1    Kunkel, T.A.2
  • 4
    • 0345060498 scopus 로고    scopus 로고
    • Fidelity of DNA polymerase delta holoenzyme from Saccharomyces cerevisiae: The sliding clamp proliferating cell nuclear antigen decreases its fidelity
    • Hashimoto,K., Shimizu,K., Nakashima,N. and Sugino,A. (2003) Fidelity of DNA polymerase delta holoenzyme from Saccharomyces cerevisiae: The sliding clamp proliferating cell nuclear antigen decreases its fidelity. Biochemistry, 42, 14207-14213.
    • (2003) Biochemistry , vol.42 , pp. 14207-14213
    • Hashimoto, K.1    Shimizu, K.2    Nakashima, N.3    Sugino, A.4
  • 5
    • 23844522523 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae DNA polymerase {delta}: High fidelity for base substitutions but lower fidelity for single- and multi-base deletions
    • Fortune,J.M., Pavlov,Y.I., Welch,C.M., Johansson,E., Burgers,P.M. and Kunkel,T.A. (2005) Saccharomyces cerevisiae DNA polymerase {delta}: High fidelity for base substitutions but lower fidelity for single- and multi-base deletions. J. Biol. Chem., 280, 29980-29987.
    • (2005) J. Biol. Chem. , vol.280 , pp. 29980-29987
    • Fortune, J.M.1    Pavlov, Y.I.2    Welch, C.M.3    Johansson, E.4    Burgers, P.M.5    Kunkel, T.A.6
  • 6
    • 0030908093 scopus 로고    scopus 로고
    • Replication protein A: A heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism
    • Wold,M.S. (1997) Replication protein A: A heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. Annu. Rev. Biochem., 66, 61-92.
    • (1997) Annu. Rev. Biochem. , vol.66 , pp. 61-92
    • Wold, M.S.1
  • 7
    • 0033230401 scopus 로고    scopus 로고
    • Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme
    • Yuzhakov,A., Kelman,Z., Hurwitz,J. and O'Donnell,M. (1999) Multiple competition reactions for RPA order the assembly of the DNA polymerase delta holoenzyme. EMBO J., 18, 6189-6199.
    • (1999) EMBO J. , vol.18 , pp. 6189-6199
    • Yuzhakov, A.1    Kelman, Z.2    Hurwitz, J.3    O'Donnell, M.4
  • 8
    • 0022966781 scopus 로고
    • An auxiliary protein for DNA polymerase-delta from fetal calf thymus
    • Tan,C.K., Castillo,C., So,A.G. and Downey,K.M. (1986) An auxiliary protein for DNA polymerase-delta from fetal calf thymus. J. Biol. Chem., 261, 12310-12316.
    • (1986) J. Biol. Chem. , vol.261 , pp. 12310-12316
    • Tan, C.K.1    Castillo, C.2    So, A.G.3    Downey, K.M.4
  • 9
    • 0025189911 scopus 로고
    • Functions of replication factor C and proliferating-cell nuclear antigen: Functional similarity of DNA polymerase accessory proteins from human cells and bacteriophage T4
    • Tsurimoto,T. and Stillman,B. (1990) Functions of replication factor C and proliferating-cell nuclear antigen: Functional similarity of DNA polymerase accessory proteins from human cells and bacteriophage T4. Proc. Natl Acad. Sci. USA, 87, 1023-1027.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1023-1027
    • Tsurimoto, T.1    Stillman, B.2
  • 10
    • 0032860479 scopus 로고    scopus 로고
    • Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants
    • Chen,C. and Kolodner,R.D. (1999) Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants. Nature Genet., 23, 81-85.
    • (1999) Nature Genet. , vol.23 , pp. 81-85
    • Chen, C.1    Kolodner, R.D.2
  • 12
    • 0030031091 scopus 로고    scopus 로고
    • The large subunit of replication factor C (Rfc1p/Cdc44p) is required for DNA replication and DNA repair in Saccharomyces cerevisiae
    • McAlear,M.A., Tuffo,K.M. and Holm,C. (1996) The large subunit of replication factor C (Rfc1p/Cdc44p) is required for DNA replication and DNA repair in Saccharomyces cerevisiae. Genetics, 142, 65-78.
    • (1996) Genetics , vol.142 , pp. 65-78
    • McAlear, M.A.1    Tuffo, K.M.2    Holm, C.3
  • 13
    • 0032711721 scopus 로고    scopus 로고
    • Dominant mutations in three different subunits of replication factor C suppress replication defects in yeast PCNA mutants
    • Amin,N.S., Tuffo,K.M. and Holm,C. (1999) Dominant mutations in three different subunits of replication factor C suppress replication defects in yeast PCNA mutants. Genetics, 153, 1617-1628.
    • (1999) Genetics , vol.153 , pp. 1617-1628
    • Amin, N.S.1    Tuffo, K.M.2    Holm, C.3
  • 14
    • 0030857979 scopus 로고    scopus 로고
    • Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase delta and DNA polymerase epsilon
    • Eissenberg,J.C., Ayyagari,R., Gomes,X.V. and Burgers,P.M. (1997) Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase delta and DNA polymerase epsilon. Mol. Cell. Biol., 17, 6367-6378.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 6367-6378
    • Eissenberg, J.C.1    Ayyagari, R.2    Gomes, X.V.3    Burgers, P.M.4
  • 15
    • 0032741610 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae pol30 (proliferating cell nuclear antigen) mutations impair replication fidelity and mismatch repair
    • Chen,C., Merrill,B.J., Lau,P.J., Holm,C. and Kolodner,R.D. (1999) Saccharomyces cerevisiae pol30 (proliferating cell nuclear antigen) mutations impair replication fidelity and mismatch repair. Mol. Cell. Biol., 19, 7801-7815.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 7801-7815
    • Chen, C.1    Merrill, B.J.2    Lau, P.J.3    Holm, C.4    Kolodner, R.D.5
  • 17
    • 18844409530 scopus 로고    scopus 로고
    • Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy
    • Bebenek,A., Carver,G.T., Kadyrov,F.A., Kissling,G.E. and Drake,J.W. (2005) Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy. Genetics, 169, 1815-1824.
    • (2005) Genetics , vol.169 , pp. 1815-1824
    • Bebenek, A.1    Carver, G.T.2    Kadyrov, F.A.3    Kissling, G.E.4    Drake, J.W.5
  • 18
    • 0028277915 scopus 로고
    • Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit
    • Kunkel,T.A., Patel,S.S. and Johnson,K.A. (1994) Error-prone replication of repeated DNA sequences by T7 DNA polymerase in the absence of its processivity subunit. Proc. Natl Acad. Sci. USA, 91, 6830-6834.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6830-6834
    • Kunkel, T.A.1    Patel, S.S.2    Johnson, K.A.3
  • 20
    • 0035914329 scopus 로고    scopus 로고
    • The fidelity of human DNA polymerase gamma with and without exonucleolytic proofreading and the p55 accessory subunit
    • Longley,M.J., Nguyen,D., Kunkel,T.A. and Copeland,W.C. (2001) The fidelity of human DNA polymerase gamma with and without exonucleolytic proofreading and the p55 accessory subunit. J. Biol. Chem., 276, 38555-38562.
    • (2001) J. Biol. Chem. , vol.276 , pp. 38555-38562
    • Longley, M.J.1    Nguyen, D.2    Kunkel, T.A.3    Copeland, W.C.4
  • 21
    • 2342419732 scopus 로고    scopus 로고
    • DNA replication fidelity
    • Kunkel,T.A. (2004) DNA replication fidelity. J. Biol. Chem., 279, 16895-16898.
    • (2004) J. Biol. Chem. , vol.279 , pp. 16895-16898
    • Kunkel, T.A.1
  • 22
    • 0034437672 scopus 로고    scopus 로고
    • Streisinger revisited: DNA synthesis errors mediated by substrate misalignments
    • Bebenek,K. and Kunkel,T.A. (2000) Streisinger revisited: DNA synthesis errors mediated by substrate misalignments. Cold Spring Harb. Symp. Quant. Biol., 65, 81-91.
    • (2000) Cold Spring Harb. Symp. Quant. Biol. , vol.65 , pp. 81-91
    • Bebenek, K.1    Kunkel, T.A.2
  • 23
    • 0028857175 scopus 로고
    • Analyzing the fidelity of DNA polymerases
    • Bebenek,K. and Kunkel,T.A. (1995) Analyzing the fidelity of DNA polymerases. Methods Enzymol., 262, 217-232.
    • (1995) Methods Enzymol. , vol.262 , pp. 217-232
    • Bebenek, K.1    Kunkel, T.A.2
  • 24
    • 0028245269 scopus 로고
    • Recombinant replication protein A: Expression, complex formation, and functional characterization
    • Henricksen,L.A., Umbricht,C.B. and Wold,M.S. (1994) Recombinant replication protein A: Expression, complex formation, and functional characterization. J. Biol. Chem., 269, 11121-11132.
    • (1994) J. Biol. Chem. , vol.269 , pp. 11121-11132
    • Henricksen, L.A.1    Umbricht, C.B.2    Wold, M.S.3
  • 25
    • 0037449738 scopus 로고    scopus 로고
    • Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 AND DNA2
    • Ayyagari,R., Gomes,X.V., Gordenin,D.A. and Burgers,P.M. (2003) Okazaki fragment maturation in yeast. I. Distribution of functions between FEN1 AND DNA2. J. Biol. Chem., 278, 1618-1625.
    • (2003) J. Biol. Chem. , vol.278 , pp. 1618-1625
    • Ayyagari, R.1    Gomes, X.V.2    Gordenin, D.A.3    Burgers, P.M.4
  • 27
    • 0025370822 scopus 로고
    • Substrate requirements of human rhinovirus 3C protease for peptide cleavage in vitro
    • Cordingley,M.G., Callahan,P.L., Sardana,V.V., Garsky,V.M. and Colonno,R.J. (1990) Substrate requirements of human rhinovirus 3C protease for peptide cleavage in vitro. J. Biol. Chem., 265, 9062-9065.
    • (1990) J. Biol. Chem. , vol.265 , pp. 9062-9065
    • Cordingley, M.G.1    Callahan, P.L.2    Sardana, V.V.3    Garsky, V.M.4    Colonno, R.J.5
  • 28
    • 0035942104 scopus 로고    scopus 로고
    • The 3′→5′ exonuclease of DNA polymerase delta can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability
    • Jin,Y.H., Obert,R., Burgers,P.M., Kunkel,T.A., Resnick,M.A. and Gordenin,D.A. (2001) The 3′→5′ exonuclease of DNA polymerase delta can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc. Natl Acad. Sci. USA, 98, 5122-5127.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 5122-5127
    • Jin, Y.H.1    Obert, R.2    Burgers, P.M.3    Kunkel, T.A.4    Resnick, M.A.5    Gordenin, D.A.6
  • 29
    • 0032825991 scopus 로고    scopus 로고
    • Overexpression of multisubunit replication factors in yeast
    • Burgers,P.M. (1999) Overexpression of multisubunit replication factors in yeast. Methods, 18, 349-355.
    • (1999) Methods , vol.18 , pp. 349-355
    • Burgers, P.M.1
  • 30
    • 0032584599 scopus 로고    scopus 로고
    • Structure and processivity of two forms of Saccharomyces cerevisiae DNA polymerase delta
    • Burgers,P.M. and Gerik,K.J. (1998) Structure and processivity of two forms of Saccharomyces cerevisiae DNA polymerase delta. J. Biol. Chem., 273, 19756-19762.
    • (1998) J. Biol. Chem. , vol.273 , pp. 19756-19762
    • Burgers, P.M.1    Gerik, K.J.2
  • 32
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini,Y. and Hochberg,Y. (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R Stat. Soc. Ser. B, 57, 289-300.
    • (1995) J. R Stat. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 33
    • 0029743491 scopus 로고    scopus 로고
    • Fidelity and error specificity of the alpha catalytic subunit of Escherichia coli DNA polymerase III
    • Mo,J.Y. and Schaaper,R.M. (1996) Fidelity and error specificity of the alpha catalytic subunit of Escherichia coli DNA polymerase III. J. Biol. Chem., 271, 18947-18953.
    • (1996) J. Biol. Chem. , vol.271 , pp. 18947-18953
    • Mo, J.Y.1    Schaaper, R.M.2
  • 34
    • 0029906624 scopus 로고    scopus 로고
    • Proliferating cell nuclear antigen promotes misincorporation catalyzed by calf thymus DNA polymerase delta
    • Mozzherin,D.J., McConnell,M., Jasko,M.V., Krayevsky,A.A., Tan,C.K., Downey,K.M. and Fisher,P.A. (1996) Proliferating cell nuclear antigen promotes misincorporation catalyzed by calf thymus DNA polymerase delta. J. Biol. Chem., 271, 31711-31717.
    • (1996) J. Biol. Chem. , vol.271 , pp. 31711-31717
    • Mozzherin, D.J.1    McConnell, M.2    Jasko, M.V.3    Krayevsky, A.A.4    Tan, C.K.5    Downey, K.M.6    Fisher, P.A.7
  • 35
    • 0030836866 scopus 로고    scopus 로고
    • Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies
    • Bloom,L.B., Chen,X., Fygenson,D.K., Turner,J., O'Donnell,M. and Goodman,M.F. (1997) Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies. J. Biol. Chem., 272, 27919-27930.
    • (1997) J. Biol. Chem. , vol.272 , pp. 27919-27930
    • Bloom, L.B.1    Chen, X.2    Fygenson, D.K.3    Turner, J.4    O'Donnell, M.5    Goodman, M.F.6
  • 36
    • 0032483332 scopus 로고    scopus 로고
    • The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro
    • Pham,P.T., Olson,M.W., McHenry,C.S. and Schaaper,R.M. (1998) The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro. J. Biol. Chem., 273, 23575-23584.
    • (1998) J. Biol. Chem. , vol.273 , pp. 23575-23584
    • Pham, P.T.1    Olson, M.W.2    McHenry, C.S.3    Schaaper, R.M.4
  • 37
    • 0035851134 scopus 로고    scopus 로고
    • Fidelity of nucleotide incorporation by human mitochondrial DNA polymerase
    • Johnson,A.A. and Johnson,K.A. (2001) Fidelity of nucleotide incorporation by human mitochondrial DNA polymerase. J. Biol. Chem., 276, 38090-38096.
    • (2001) J. Biol. Chem. , vol.276 , pp. 38090-38096
    • Johnson, A.A.1    Johnson, K.A.2
  • 38
  • 39
    • 0023790391 scopus 로고
    • Mutagenesis by transient misalignment
    • Kunkel,T.A. and Soni,A. (1988) Mutagenesis by transient misalignment. J. Biol. Chem., 263, 14784-14789.
    • (1988) J. Biol. Chem. , vol.263 , pp. 14784-14789
    • Kunkel, T.A.1    Soni, A.2
  • 40
    • 0021872030 scopus 로고
    • The mutational specificity of DNA polymerase-β during in vitro DNA synthesis: Production of frameshift, base substitution, and deletion mutations
    • Kunkel,T.A. (1985) The mutational specificity of DNA polymerase-β during in vitro DNA synthesis: Production of frameshift, base substitution, and deletion mutations. J. Biol. Chem., 260, 5787-5796.
    • (1985) J. Biol. Chem. , vol.260 , pp. 5787-5796
    • Kunkel, T.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.