메뉴 건너뛰기




Volumn 6, Issue 2, 2007, Pages 137-145

Differential protein expression patterns obtained by mass spectrometry can aid in the diagnosis of Hodgkin's disease

Author keywords

Feature selection; Hodgkin's disease; Lymphoma; Pattern recognition; Proteomics

Indexed keywords

ARTICLE; CANCER CELL; CANCER PATIENT; CLINICAL ARTICLE; CONTROLLED STUDY; EARLY DIAGNOSIS; HODGKIN DISEASE; HUMAN; MASS SPECTROMETRY; PRIORITY JOURNAL; PROGNOSIS; PROTEIN EXPRESSION; PROTEOMICS;

EID: 33947407619     PISSN: 13594117     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (56)
  • 1
    • 5444227855 scopus 로고    scopus 로고
    • Proteomic patterns as a diagnostic tool for early-stage cancer: A review of its progress to a clinically relevant tool
    • Conrads TP, Hood BL, Issaq HJ, Veenstra TD: Proteomic patterns as a diagnostic tool for early-stage cancer: a review of its progress to a clinically relevant tool. Mol Diagn 8:77-85, 2004.
    • (2004) Mol Diagn , vol.8 , pp. 77-85
    • Conrads, T.P.1    Hood, B.L.2    Issaq, H.J.3    Veenstra, T.D.4
  • 2
    • 4344698090 scopus 로고    scopus 로고
    • Promise and challenge: Markers of prostate cancer detection, diagnosis and prognosis
    • Troyer DA, Mubiru J, Leach RJ, Naylor SL: Promise and challenge: Markers of prostate cancer detection, diagnosis and prognosis. Dis Markers 20:117-128, 2004.
    • (2004) Dis Markers , vol.20 , pp. 117-128
    • Troyer, D.A.1    Mubiru, J.2    Leach, R.J.3    Naylor, S.L.4
  • 3
    • 33644926988 scopus 로고    scopus 로고
    • Polymorphisms in the prostate-specific antigen gene promoter do not predict serum prostate-specific antigen levels in African-American men
    • Beebe-Dimmer JL, Lange LA, Cain JE, Lewis RC, Ray AM, Sarma AV et al.: Polymorphisms in the prostate-specific antigen gene promoter do not predict serum prostate-specific antigen levels in African-American men. Prostate Cancer Prostatic Dis 9:50-55, 2005.
    • (2005) Prostate Cancer Prostatic Dis , vol.9 , pp. 50-55
    • Beebe-Dimmer, J.L.1    Lange, L.A.2    Cain, J.E.3    Lewis, R.C.4    Ray, A.M.5    Sarma, A.V.6
  • 6
    • 24144470761 scopus 로고    scopus 로고
    • Prostate cancer screening attitudes and continuing education needs of primary care physicians
    • Curran V, Solberg S, Mathews M, Church J, Buehler S, Wells J et al.: Prostate cancer screening attitudes and continuing education needs of primary care physicians. J Cancer Educ 20:162-166, 2005.
    • (2005) J Cancer Educ , vol.20 , pp. 162-166
    • Curran, V.1    Solberg, S.2    Mathews, M.3    Church, J.4    Buehler, S.5    Wells, J.6
  • 8
    • 0035668456 scopus 로고    scopus 로고
    • A proteomic approach for the discovery of early detection markers of hepatocellular carcinoma
    • Steel LF, Mattu TS, Mehta A, Hebestreit H, Dwek R, Evans AA et al.: A proteomic approach for the discovery of early detection markers of hepatocellular carcinoma. Dis Markers 17:179-189, 2001.
    • (2001) Dis Markers , vol.17 , pp. 179-189
    • Steel, L.F.1    Mattu, T.S.2    Mehta, A.3    Hebestreit, H.4    Dwek, R.5    Evans, A.A.6
  • 10
    • 0036324715 scopus 로고    scopus 로고
    • Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer
    • Li J, Zhang Z, Rosenzweig J, Wang YY, Chan DW: Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. Clin Chem 48:1296-1304, 2002.
    • (2002) Clin Chem , vol.48 , pp. 1296-1304
    • Li, J.1    Zhang, Z.2    Rosenzweig, J.3    Wang, Y.Y.4    Chan, D.W.5
  • 11
    • 0036645099 scopus 로고    scopus 로고
    • Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
    • Adam BL, Qu Y, Davis JW, Ward MD, Clements MA, Cazares LH et al.: Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. Cancer Res 62:3609-3614, 2002.
    • (2002) Cancer Res , vol.62 , pp. 3609-3614
    • Adam, B.L.1    Qu, Y.2    Davis, J.W.3    Ward, M.D.4    Clements, M.A.5    Cazares, L.H.6
  • 12
    • 0036791428 scopus 로고    scopus 로고
    • Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients
    • Qu Y, Adam BL, Yasui Y, Ward MD, Cazares LH, Schellhammer PF et al.: Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. Clin Chem 48:1835-1843, 2002.
    • (2002) Clin Chem , vol.48 , pp. 1835-1843
    • Qu, Y.1    Adam, B.L.2    Yasui, Y.3    Ward, M.D.4    Cazares, L.H.5    Schellhammer, P.F.6
  • 15
    • 0742269626 scopus 로고    scopus 로고
    • Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum
    • Lilien RH, Farid H, Donald BR: Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum. J Comput Biol 10:925-946, 2003.
    • (2003) J Comput Biol , vol.10 , pp. 925-946
    • Lilien, R.H.1    Farid, H.2    Donald, B.R.3
  • 17
    • 0003450542 scopus 로고
    • Jordan M, Lauritzen F, Lawless J, Nair V, eds. Springer-Verlag: New York, Inc
    • Vapnik VN: The nature of statistical learning theory. Jordan M, Lauritzen F, Lawless J, Nair V., eds. Springer-Verlag: New York, Inc. 1995.
    • (1995) The nature of statistical learning theory
    • Vapnik, V.N.1
  • 18
    • 4043081192 scopus 로고    scopus 로고
    • Data mining and genetic algorithm based gene/SNP selection
    • Shan S C., Kusiak A: Data mining and genetic algorithm based gene/SNP selection. Artifitial Intelligence in Medicine 2004. 31:183-196.
    • (2004) Artifitial Intelligence in Medicine , vol.31 , pp. 183-196
    • Shan, S.C.1    Kusiak, A.2
  • 19
    • 12844284750 scopus 로고    scopus 로고
    • Effects of classifier structures and training regimes on integrated segmentation and recognition of handwritten numeral strings
    • Liu CL, Sako H, Fujisawa H: Effects of classifier structures and training regimes on integrated segmentation and recognition of handwritten numeral strings. IEEE Trans Pattern Anal Mach Intell 26:1395-1407, 2004.
    • (2004) IEEE Trans Pattern Anal Mach Intell , vol.26 , pp. 1395-1407
    • Liu, C.L.1    Sako, H.2    Fujisawa, H.3
  • 20
    • 0030198250 scopus 로고    scopus 로고
    • Managing temporal worlds for medical trend diagnosis
    • Haimowitz IJ, Kohane IS: Managing temporal worlds for medical trend diagnosis. Artif Intell Med 8:299-321, 1996.
    • (1996) Artif Intell Med , vol.8 , pp. 299-321
    • Haimowitz, I.J.1    Kohane, I.S.2
  • 21
    • 0038118135 scopus 로고    scopus 로고
    • An enhanced branch-and-bound algorithm for a partitioning problem
    • Brusco MJ: An enhanced branch-and-bound algorithm for a partitioning problem. Br J Math Stat Psychol 56:83-92, 2003.
    • (2003) Br J Math Stat Psychol , vol.56 , pp. 83-92
    • Brusco, M.J.1
  • 22
    • 2442498884 scopus 로고    scopus 로고
    • An efficient branch-and-bound algorithm for the assignment of protein backbone NMR peaks
    • Lin G, Xu D, Chen ZZ, Jiang T, Wen J, Xu Y: An efficient branch-and-bound algorithm for the assignment of protein backbone NMR peaks. Proc IEEE Comput Soc Bioinform Conf 1:165-174, 2002.
    • (2002) Proc IEEE Comput Soc Bioinform Conf , vol.1 , pp. 165-174
    • Lin, G.1    Xu, D.2    Chen, Z.Z.3    Jiang, T.4    Wen, J.5    Xu, Y.6
  • 23
    • 0036677932 scopus 로고    scopus 로고
    • A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families
    • Pupko T, Pe'er I, Hasegawa M, Graur D, Friedman N: A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Bioinformatics 18:1116-1123, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 1116-1123
    • Pupko, T.1    Pe'er, I.2    Hasegawa, M.3    Graur, D.4    Friedman, N.5
  • 24
    • 20444414876 scopus 로고    scopus 로고
    • Myocardial border detection by branch-and-bound dynamic programming in magnetic resonance images
    • Yeh JY, Fu JC, Wu CC, Lin HM, Chai JW: Myocardial border detection by branch-and-bound dynamic programming in magnetic resonance images. Comput Methods Programs Biomed 79:19-29, 2005.
    • (2005) Comput Methods Programs Biomed , vol.79 , pp. 19-29
    • Yeh, J.Y.1    Fu, J.C.2    Wu, C.C.3    Lin, H.M.4    Chai, J.W.5
  • 25
    • 28244484386 scopus 로고    scopus 로고
    • Role of plasma lipids and lipoproteins in predicting amphotericin B-induced nephrotoxicity in pediatric oncology patients
    • Wasan KM, Wong JC, Corr T, Pritchard S: Role of plasma lipids and lipoproteins in predicting amphotericin B-induced nephrotoxicity in pediatric oncology patients. Cancer Chemother Pharmacol 57:120-124, 2005.
    • (2005) Cancer Chemother Pharmacol , vol.57 , pp. 120-124
    • Wasan, K.M.1    Wong, J.C.2    Corr, T.3    Pritchard, S.4
  • 27
    • 0034774018 scopus 로고    scopus 로고
    • Optimal filter-based detection of microcalcifications
    • Gulsrud TO, Husoy JH: Optimal filter-based detection of microcalcifications. IEEE Trans Biomed Eng 48:1272-1281, 2001.
    • (2001) IEEE Trans Biomed Eng , vol.48 , pp. 1272-1281
    • Gulsrud, T.O.1    Husoy, J.H.2
  • 28
    • 0036161259 scopus 로고    scopus 로고
    • Gene Selection for Cancer Classification using Support Vector Machines
    • Guyon I, Weston J, Barnhill S, Vapnik V. Gene Selection for Cancer Classification using Support Vector Machines. Mach Learn 46:389-422, 2002.
    • (2002) Mach Learn , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 29
    • 0347286872 scopus 로고    scopus 로고
    • Thomas RK, Re D, Wolf J, Diehl V: Part I: Hodgkin's lymphoma - molecular biology of Hodgkin and Reed-Sternberg cells. Lancet Oncol 5:11-18, 2004
    • Thomas RK, Re D, Wolf J, Diehl V: Part I: Hodgkin's lymphoma - molecular biology of Hodgkin and Reed-Sternberg cells. Lancet Oncol 5:11-18, 2004
  • 30
    • 0347286860 scopus 로고    scopus 로고
    • Part II: Hodgkin's lymphoma-diagnosis and treatment
    • Diehl V, Thomas RK, Re D: Part II: Hodgkin's lymphoma-diagnosis and treatment. Lancet Oncol 5:19-26, 2004
    • (2004) Lancet Oncol , vol.5 , pp. 19-26
    • Diehl, V.1    Thomas, R.K.2    Re, D.3
  • 33
    • 0036161259 scopus 로고    scopus 로고
    • Gene Selection for Cancer Classification using Support Vector Machines
    • Guyon I, Weston J, Barnhill S, Vapnik V. Gene Selection for Cancer Classification using Support Vector Machines. Mach Learn 46:389-422, 2002.
    • (2002) Mach Learn , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 35
    • 0033493715 scopus 로고    scopus 로고
    • Prostate-specific antigen: Current status
    • Brawer MK: Prostate-specific antigen: current status. CA Cancer J Clin 49:264-281, 1999.
    • (1999) CA Cancer J Clin , vol.49 , pp. 264-281
    • Brawer, M.K.1
  • 36
    • 0142008803 scopus 로고    scopus 로고
    • A data-analytic strategy for protein biomarker discovery: Profiling of high-dimensional proteomic data for cancer detection
    • Yasui Y, Pepe M, Thompson ML, Adam BL, Wright GL, Jr., Qu Y et al.: A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection. Biostatistics 4:449-463, 2003.
    • (2003) Biostatistics , vol.4 , pp. 449-463
    • Yasui, Y.1    Pepe, M.2    Thompson, M.L.3    Adam, B.L.4    Wright Jr., G.L.5    Qu, Y.6
  • 37
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments
    • Baggerly KA, Morris JS, Coombes KR: Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics, 20:777-785, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 38
    • 12944272015 scopus 로고    scopus 로고
    • Plasma protein profiling by mass spectrometry for cancer diagnosis: Opportunities and limitations
    • Diamandis EP, van der Merwe DE: Plasma protein profiling by mass spectrometry for cancer diagnosis: opportunities and limitations. Clin Cancer Res 11:963-965, 2005.
    • (2005) Clin Cancer Res , vol.11 , pp. 963-965
    • Diamandis, E.P.1    van der Merwe, D.E.2
  • 39
    • 2542640080 scopus 로고    scopus 로고
    • Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: Opportunities and potential limitations
    • Diamandis EP: Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol Cell Proteomics 3:367-378, 2004.
    • (2004) Mol Cell Proteomics , vol.3 , pp. 367-378
    • Diamandis, E.P.1
  • 40
    • 1542378202 scopus 로고    scopus 로고
    • Analysis of serum proteomic patterns for early cancer diagnosis: Drawing attention to potential problems
    • Diamandis EP: Analysis of serum proteomic patterns for early cancer diagnosis: drawing attention to potential problems. J Natl Cancer Inst 96:353-356, 2004.
    • (2004) J Natl Cancer Inst , vol.96 , pp. 353-356
    • Diamandis, E.P.1
  • 41
    • 0042367739 scopus 로고    scopus 로고
    • Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?
    • Diamandis EP: Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics? Clin Chem 49:1272-1275, 2003.
    • (2003) Clin Chem , vol.49 , pp. 1272-1275
    • Diamandis, E.P.1
  • 43
  • 44
    • 0012472421 scopus 로고    scopus 로고
    • Identification of prostate specific membrane antigen (PSMA) as the target of monoclonal antibody 107-1A4 by proteinchip; array, surface-enhanced laser desorption/ionization (SELDI) technology
    • Wang S, Diamond DL, Mass GM, Sokoloff R, Vessella RL: Identification of prostate specific membrane antigen (PSMA) as the target of monoclonal antibody 107-1A4 by proteinchip; array, surface-enhanced laser desorption/ionization (SELDI) technology. Int J Cancer 92:871-876, 2001.
    • (2001) Int J Cancer , vol.92 , pp. 871-876
    • Wang, S.1    Diamond, D.L.2    Mass, G.M.3    Sokoloff, R.4    Vessella, R.L.5
  • 45
    • 25144519779 scopus 로고    scopus 로고
    • SELDI-TOF mass spectrometry for cancer biomarker discovery and serum proteomic diagnostics
    • Simpkins F, Czechowicz JA, Liotta L, Kohn EC: SELDI-TOF mass spectrometry for cancer biomarker discovery and serum proteomic diagnostics. Pharmacogenomics 6:647-653, 2005.
    • (2005) Pharmacogenomics , vol.6 , pp. 647-653
    • Simpkins, F.1    Czechowicz, J.A.2    Liotta, L.3    Kohn, E.C.4
  • 47
    • 19444377202 scopus 로고    scopus 로고
    • Serum protein profiling by SELDI mass spectrometry: Detection of multiple variants of serum amyloid alpha in renal cancer patients
    • Marshall FF: Serum protein profiling by SELDI mass spectrometry: detection of multiple variants of serum amyloid alpha in renal cancer patients. J Urol 173:1919-1920, 2005.
    • (2005) J Urol , vol.173 , pp. 1919-1920
    • Marshall, F.F.1
  • 48
    • 2642540143 scopus 로고    scopus 로고
    • Application of SELDI-TOF mass spectrometry for the identification of differentially expressed proteins in transformed follicular lymphoma
    • Lin Z, Jenson SD, Lim MS, Elenitoba-Johnson KS: Application of SELDI-TOF mass spectrometry for the identification of differentially expressed proteins in transformed follicular lymphoma. Mod Pathol 17:670-678, 2004
    • (2004) Mod Pathol , vol.17 , pp. 670-678
    • Lin, Z.1    Jenson, S.D.2    Lim, M.S.3    Elenitoba-Johnson, K.S.4
  • 49
    • 16544370448 scopus 로고    scopus 로고
    • Surfaced-enhanced laser desorption/ionization time-of-flight (SELDI-TOF) differentiation of serum protein profiles of BRCA-1 and sporadic breast cancer
    • Becker S, Cazares LH, Watson P, Lynch H, Semmes OJ, Drake RR et al.: Surfaced-enhanced laser desorption/ionization time-of-flight (SELDI-TOF) differentiation of serum protein profiles of BRCA-1 and sporadic breast cancer. Ann Surg Oncol 11:907-914, 2004
    • (2004) Ann Surg Oncol , vol.11 , pp. 907-914
    • Becker, S.1    Cazares, L.H.2    Watson, P.3    Lynch, H.4    Semmes, O.J.5    Drake, R.R.6
  • 50
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments
    • Baggerly KA, Morris JS, Coombes KR: Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 20:777-785, 2004
    • (2004) Bioinformatics , vol.20 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 51
    • 12944272015 scopus 로고    scopus 로고
    • Plasma protein profiling by mass spectrometry for cancer diagnosis: Opportunities and limitations
    • Diamandis EP, van der Merwe DE: Plasma protein profiling by mass spectrometry for cancer diagnosis: opportunities and limitations. Clin Cancer Res 11:963-965, 2005.
    • (2005) Clin Cancer Res , vol.11 , pp. 963-965
    • Diamandis, E.P.1    van der Merwe, D.E.2
  • 53
    • 23944524368 scopus 로고    scopus 로고
    • Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
    • Echan LA, Tang HY, Li-Khan N, Lee K, Speicher DW: Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma. Proteomics 5:3292-3303, 2005.
    • (2005) Proteomics , vol.5 , pp. 3292-3303
    • Echan, L.A.1    Tang, H.Y.2    Li-Khan, N.3    Lee, K.4    Speicher, D.W.5
  • 54
    • 0042868833 scopus 로고    scopus 로고
    • Counterpoint: The vision for a new diagnostic paradigm
    • Petricoin E, III, Liotta LA: Counterpoint: The vision for a new diagnostic paradigm. Clin Chem 49:1276-1278, 2003.
    • (2003) Clin Chem , vol.49 , pp. 1276-1278
    • Petricoin III, E.1    Liotta, L.A.2
  • 55
    • 0042367739 scopus 로고    scopus 로고
    • Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics?
    • Diamandis EP: Point: Proteomic patterns in biological fluids: do they represent the future of cancer diagnostics? Clin Chem 49:1272-1275, 2003
    • (2003) Clin Chem , vol.49 , pp. 1272-1275
    • Diamandis, E.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.