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Volumn 6, Issue 6, 2005, Pages 647-653

SELDI-TOF mass spectrometry for cancer biomarker discovery and serum proteomic diagnostics

Author keywords

Biomarker; Mass spectrometry; Proteomics; SELDI TOF

Indexed keywords

AMYLOID A PROTEIN; BIOLOGICAL MARKER; CA 125 ANTIGEN; GLOBIN; PROTEOLIPID PROTEIN;

EID: 25144519779     PISSN: 14622416     EISSN: 17448042     Source Type: Journal    
DOI: 10.2217/14622416.6.6.647     Document Type: Article
Times cited : (42)

References (51)
  • 1
    • 0037132844 scopus 로고    scopus 로고
    • Molecular markers in colorectal cancer
    • Anderson GR, Brenner BM: Molecular markers in colorectal cancer. Lancet 359(9302), 183-184 (2002).
    • (2002) Lancet , vol.359 , Issue.9302 , pp. 183-184
    • Anderson, G.R.1    Brenner, B.M.2
  • 2
    • 0029832847 scopus 로고    scopus 로고
    • Identification of needs in biomarker research
    • Ward JB Jr, Henderson RE: Identification of needs in biomarker research. Environ. Health Perspect. 104(Suppl. 5), 895-900 (1996).
    • (1996) Environ. Health Perspect. , vol.104 , Issue.SUPPL. 5 , pp. 895-900
    • Ward Jr., J.B.1    Henderson, R.E.2
  • 3
    • 0020559574 scopus 로고
    • A radioimmunoassay using a monoclonal antibody to monitor the course of epithelial ovarian cancer
    • Bast RC Jr, King TL, St John E et al.: A radioimmunoassay using a monoclonal antibody to monitor the course of epithelial ovarian cancer. N. Engl. J. Med. 309(15), 883-887 (1983).
    • (1983) N. Engl. J. Med. , vol.309 , Issue.15 , pp. 883-887
    • Bast Jr., R.C.1    King, T.L.2    St. John, E.3
  • 4
    • 0034931954 scopus 로고    scopus 로고
    • Three-dimensional power Doppler ultrasound improves the diagnostic accuracy for ovarian cancer prediction
    • Cohen LS, Escobar PF, Scharm C, Glimco B, Fishman DA: Three-dimensional power Doppler ultrasound improves the diagnostic accuracy for ovarian cancer prediction. Gynecol. Oncol. 82(1), 40-48 (2001).
    • (2001) Gynecol. Oncol. , vol.82 , Issue.1 , pp. 40-48
    • Cohen, L.S.1    Escobar, P.F.2    Scharm, C.3    Glimco, B.4    Fishman, D.A.5
  • 5
    • 0034463113 scopus 로고    scopus 로고
    • Recent developments in ovarian cancer screening
    • Menon U, Jacobs IJ: Recent developments in ovarian cancer screening. Curr. Opin. Obstet. Gynecol. 12(1), 39-42 (2000).
    • (2000) Curr. Opin. Obstet. Gynecol. , vol.12 , Issue.1 , pp. 39-42
    • Menon, U.1    Jacobs, I.J.2
  • 8
    • 0028829508 scopus 로고
    • Toward an optimal algorithm for ovarian cancer screening with longitudinal tumor markers
    • Skates SJ, Xu FJ, Yu YH et al.: Toward an optimal algorithm for ovarian cancer screening with longitudinal tumor markers. Cancer 76(Suppl. 10), 2004-2010 (1995).
    • (1995) Cancer , vol.76 , Issue.SUPPL. 10 , pp. 2004-2010
    • Skates, S.J.1    Xu, F.J.2    Yu, Y.H.3
  • 9
    • 2542568705 scopus 로고    scopus 로고
    • The human plasma proteome: A nonredundant list developed by combination of four separate sources
    • Anderson NL, Polanski M, Pieper R et al.: The human plasma proteome: a nonredundant list developed by combination of four separate sources. Mol. Cell Proteomics 3(4), 311-326 (2004).
    • (2004) Mol. Cell Proteomics , vol.3 , Issue.4 , pp. 311-326
    • Anderson, N.L.1    Polanski, M.2    Pieper, R.3
  • 11
    • 0036402746 scopus 로고    scopus 로고
    • Comprehensive phenotyping and biological marker discovery
    • Kantor AB: Comprehensive phenotyping and biological marker discovery. Dis. Markers 18(2), 91-97 (2002).
    • (2002) Dis. Markers , vol.18 , Issue.2 , pp. 91-97
    • Kantor, A.B.1
  • 12
    • 0037116832 scopus 로고    scopus 로고
    • Use of proteomic patterns in serum to identify ovarian cancer
    • Petricoin EF, Ardekani AM, Hitt BA et al.: Use of proteomic patterns in serum to identify ovarian cancer. Lancet 359(9306), 572-577 (2002).
    • (2002) Lancet , vol.359 , Issue.9306 , pp. 572-577
    • Petricoin, E.F.1    Ardekani, A.M.2    Hitt, B.A.3
  • 13
  • 14
    • 0036324715 scopus 로고    scopus 로고
    • Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer
    • Li J, Zhang Z, Rosenzweig J, Wang YY, Chan DW: Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. Clin. Chem. 48(8), 1296-1304 (2002).
    • (2002) Clin. Chem. , vol.48 , Issue.8 , pp. 1296-1304
    • Li, J.1    Zhang, Z.2    Rosenzweig, J.3    Wang, Y.Y.4    Chan, D.W.5
  • 16
    • 0038498331 scopus 로고    scopus 로고
    • In search of an early warning system for pancreatic cancer
    • Hingorani SR, Tuveson DA: In search of an early warning system for pancreatic cancer. Cancer Biol. Ther. 2(1), 84-86 (2003).
    • (2003) Cancer Biol. Ther. , vol.2 , Issue.1 , pp. 84-86
    • Hingorani, S.R.1    Tuveson, D.A.2
  • 17
    • 0034013944 scopus 로고    scopus 로고
    • Recent advancements in surface-enhanced laser desorption/ionization time-of-flight mass spectrometry
    • Merchant M, Weinberger SR: Recent advancements in surface-enhanced laser desorption/ionization time-of-flight mass spectrometry. Electrophoresis 21(6), 1164-1177 (2000).
    • (2000) Electrophoresis , vol.21 , Issue.6 , pp. 1164-1177
    • Merchant, M.1    Weinberger, S.R.2
  • 18
    • 1242328742 scopus 로고    scopus 로고
    • SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer
    • Petricoin EF, Liotta LA: SELDI-TOF-based serum proteomic pattern diagnostics for early detection of cancer. Curr. Opin. Biotechnol. 15(1), 24-30 (2004).
    • (2004) Curr. Opin. Biotechnol. , vol.15 , Issue.1 , pp. 24-30
    • Petricoin, E.F.1    Liotta, L.A.2
  • 19
    • 0037434977 scopus 로고    scopus 로고
    • Biomedical informatics for proteomics
    • Boguski MS, McIntosh MW: Biomedical informatics for proteomics. Nature 422(6928), 233-237 (2003).
    • (2003) Nature , vol.422 , Issue.6928 , pp. 233-237
    • Boguski, M.S.1    McIntosh, M.W.2
  • 20
    • 2942581832 scopus 로고    scopus 로고
    • High-resolution serum proteomic features for ovarian cancer detection
    • Conrads TP, Fusaro VA, Ross S et al.: High-resolution serum proteomic features for ovarian cancer detection. Endocr. Relat. Cancer 11(2), 163-178 (2004).
    • (2004) Endocr. Relat. Cancer , vol.11 , Issue.2 , pp. 163-178
    • Conrads, T.P.1    Fusaro, V.A.2    Ross, S.3
  • 23
    • 0942265518 scopus 로고    scopus 로고
    • Diagnosis of ovarian cancer using decision tree classification of mass spectral data
    • Vlahou A, Schorge JO, Gregory BW, Coleman RL: Diagnosis of ovarian cancer using decision tree classification of mass spectral data. J. Biomed. Biotechnol. (5), 308-314 (2003).
    • (2003) J. Biomed. Biotechnol. , Issue.5 , pp. 308-314
    • Vlahou, A.1    Schorge, J.O.2    Gregory, B.W.3    Coleman, R.L.4
  • 24
    • 20944441736 scopus 로고    scopus 로고
    • Prediction of pancreatic cancer by serum biomarkers using surface-enhanced laser desorption/ionization-based decision tree classification
    • Yu Y, Chen S, Wang LS et al.: Prediction of pancreatic cancer by serum biomarkers using surface-enhanced laser desorption/ionization-based decision tree classification. Oncology 68(1), 79-86 (2005).
    • (2005) Oncology , vol.68 , Issue.1 , pp. 79-86
    • Yu, Y.1    Chen, S.2    Wang, L.S.3
  • 25
    • 19544394460 scopus 로고    scopus 로고
    • Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
    • Yu JS, Ongarello S, Fiedler R et al.: Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. Bioinformatics 21(10), 2200-2209 (2005).
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2200-2209
    • Yu, J.S.1    Ongarello, S.2    Fiedler, R.3
  • 26
    • 14844340809 scopus 로고    scopus 로고
    • Using tree analysis pattern and SELDI-TOF-MS to discriminate transitional cell carcinoma of the bladder cancer from noncancer patients
    • Liu W, Guan M, Wu D et al.: Using tree analysis pattern and SELDI-TOF-MS to discriminate transitional cell carcinoma of the bladder cancer from noncancer patients. Eur. Urol. 47(4), 456-462 (2005).
    • (2005) Eur. Urol. , vol.47 , Issue.4 , pp. 456-462
    • Liu, W.1    Guan, M.2    Wu, D.3
  • 27
    • 20144377294 scopus 로고    scopus 로고
    • Classification of cancer types by measuring variants of host response proteins using SELDI serum assays
    • Fung ET, Yip TT, Lomas L et al.: Classification of cancer types by measuring variants of host response proteins using SELDI serum assays. Int. J. Cancer 115(5), 783-789 (2005).
    • (2005) Int. J. Cancer , vol.115 , Issue.5 , pp. 783-789
    • Fung, E.T.1    Yip, T.T.2    Lomas, L.3
  • 28
    • 0036645099 scopus 로고    scopus 로고
    • Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
    • Adam BL, Qu Y, Davis JW et al.: Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men. Cancer Res. 62(13), 3609-3614 (2002).
    • (2002) Cancer Res. , vol.62 , Issue.13 , pp. 3609-3614
    • Adam, B.L.1    Qu, Y.2    Davis, J.W.3
  • 29
    • 10744223905 scopus 로고    scopus 로고
    • Serum diagnosis of pancreatic adenocarcinoma using surface-enhanced laser desorption and ionization mass spectrometry
    • Koopmann J, Zhang Z, White N et al.: Serum diagnosis of pancreatic adenocarcinoma using surface-enhanced laser desorption and ionization mass spectrometry. Clin. Cancer Res. 10(3), 860-868 (2004).
    • (2004) Clin. Cancer Res. , vol.10 , Issue.3 , pp. 860-868
    • Koopmann, J.1    Zhang, Z.2    White, N.3
  • 30
    • 0036791428 scopus 로고    scopus 로고
    • Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients
    • Qu Y, Adam BL, Yasui Y et al.: Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. Clin. Chem. 48(10), 1835-1843 (2002).
    • (2002) Clin. Chem. , vol.48 , Issue.10 , pp. 1835-1843
    • Qu, Y.1    Adam, B.L.2    Yasui, Y.3
  • 31
    • 0142008803 scopus 로고    scopus 로고
    • A data-analytic strategy for protein biomarker discovery: Profiling of high-dimensional proteomic data for cancer detection
    • Yasui Y, Pepe M, Thompson ML et al.: A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection. Biostatistics 4(3), 449-463 (2003).
    • (2003) Biostatistics , vol.4 , Issue.3 , pp. 449-463
    • Yasui, Y.1    Pepe, M.2    Thompson, M.L.3
  • 32
    • 0346101457 scopus 로고    scopus 로고
    • An automated peak identification/calibration procedure for high-dimensional protein measures from mass spectrometers
    • Yasui Y, McLerran D, Adam BL, Winget M, Thornquist M, Feng Z: An automated peak identification/calibration procedure for high-dimensional protein measures from mass spectrometers. J. Biomed. Biotechnol. 4, 242-248 (2003).
    • (2003) J. Biomed. Biotechnol. , vol.4 , pp. 242-248
    • Yasui, Y.1    McLerran, D.2    Adam, B.L.3    Winget, M.4    Thornquist, M.5    Feng, Z.6
  • 33
    • 19944419092 scopus 로고    scopus 로고
    • Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility
    • Semmes OJ, Feng Z, Adam BL et al.: Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility. Clin. Chem. 51(1), 102-112 (2005).
    • (2005) Clin. Chem. , vol.51 , Issue.1 , pp. 102-112
    • Semmes, O.J.1    Feng, Z.2    Adam, B.L.3
  • 34
    • 25144497708 scopus 로고    scopus 로고
    • Identification of proteins from colorectal cancer tissue by two-dimensional gel electrophoresis and SELDI mass spectrometry
    • Melle C, Osterloh D, Ernst G, Schimmel B, Bleul A, von Eggeling F: Identification of proteins from colorectal cancer tissue by two-dimensional gel electrophoresis and SELDI mass spectrometry. Int. J. Mol. Med. 16(1), 11-17 (2005).
    • (2005) Int. J. Mol. Med. , vol.16 , Issue.1 , pp. 11-17
    • Melle, C.1    Osterloh, D.2    Ernst, G.3    Schimmel, B.4    Bleul, A.5    von Eggeling, F.6
  • 35
    • 19444377202 scopus 로고    scopus 로고
    • Serum protein profiling by SELDI mass spectrometry: Detection of multiple variants of serum amyloid α in renal cancer patients
    • Marshall FF: Serum protein profiling by SELDI mass spectrometry: detection of multiple variants of serum amyloid α in renal cancer patients. J. Urol. 173(6), 1919-1920 (2005).
    • (2005) J. Urol. , vol.173 , Issue.6 , pp. 1919-1920
    • Marshall, F.F.1
  • 36
    • 4344641407 scopus 로고    scopus 로고
    • New serum biomarkers for detection of HBV-induced liver cirrhosis using SELDI protein chip technology
    • Zhu XD, Zhang WH, Li CL, Xu Y, Liang WJ, Tien P: New serum biomarkers for detection of HBV-induced liver cirrhosis using SELDI protein chip technology. World J. Gastroenterol. 10(16), 2327-2329 (2004).
    • (2004) World J. Gastroenterol. , vol.10 , Issue.16 , pp. 2327-2329
    • Zhu, X.D.1    Zhang, W.H.2    Li, C.L.3    Xu, Y.4    Liang, W.J.5    Tien, P.6
  • 37
    • 16244390914 scopus 로고    scopus 로고
    • Identification of serum amyloid A as a biomarker to distinguish prostate cancer patients with bone lesions
    • Le L, Chi K, Tyldesley S et al.: Identification of serum amyloid A as a biomarker to distinguish prostate cancer patients with bone lesions. Clin. Chem. 51(4), 695-707 (2005).
    • (2005) Clin. Chem. , vol.51 , Issue.4 , pp. 695-707
    • Le, L.1    Chi, K.2    Tyldesley, S.3
  • 38
    • 0036120653 scopus 로고    scopus 로고
    • Convergence of multiple signaling cascades at glycogen synthase kinase 3: Edg receptor-mediated phosphorylation and inactivation by lysophosphatidic acid through a protein kinase C-dependent intracellular pathway
    • Fang X, Yu S, Tanyi JL, Lu Y, Woodgett JR, Mills GB: Convergence of multiple signaling cascades at glycogen synthase kinase 3: Edg receptor-mediated phosphorylation and inactivation by lysophosphatidic acid through a protein kinase C-dependent intracellular pathway. Mol. Cell Biol. 22(7), 2099-2110 (2002).
    • (2002) Mol. Cell Biol. , vol.22 , Issue.7 , pp. 2099-2110
    • Fang, X.1    Yu, S.2    Tanyi, J.L.3    Lu, Y.4    Woodgett, J.R.5    Mills, G.B.6
  • 39
    • 3142660497 scopus 로고    scopus 로고
    • Lysophospholipids are potential biomarkers of ovarian cancer
    • Sutphen R, Xu Y, Wilbanks GD et al.: Lysophospholipids are potential biomarkers of ovarian cancer. Cancer Epidemiol. Biomarkers Prev. 13(7), 1185-1191 (2004).
    • (2004) Cancer Epidemiol. Biomarkers Prev. , vol.13 , Issue.7 , pp. 1185-1191
    • Sutphen, R.1    Xu, Y.2    Wilbanks, G.D.3
  • 40
    • 18444387979 scopus 로고    scopus 로고
    • Purification and characterization of the mammaglobin/lipophilin B complex, a promising diagnostic marker for breast cancer
    • Carter D, Douglass JF, Cornellison CD et al.: Purification and characterization of the mammaglobin/lipophilin B complex, a promising diagnostic marker for breast cancer. Biochemistry 41(21), 6714-6722 (2002).
    • (2002) Biochemistry , vol.41 , Issue.21 , pp. 6714-6722
    • Carter, D.1    Douglass, J.F.2    Cornellison, C.D.3
  • 41
    • 0037387176 scopus 로고    scopus 로고
    • Use of serological proteomic methods to find biomarkers associated with breast cancer
    • Rui Z, Jian-Guo J, Yuan-Peng T, Hai P, Bing-Gen R: Use of serological proteomic methods to find biomarkers associated with breast cancer. Proteomics 3(4), 433-439 (2003).
    • (2003) Proteomics , vol.3 , Issue.4 , pp. 433-439
    • Rui, Z.1    Jian-Guo, J.2    Yuan-Peng, T.3    Hai, P.4    Bing-Gen, R.5
  • 42
    • 0012741495 scopus 로고    scopus 로고
    • Proteomic patterns in serum and identification of ovarian cancer
    • author reply 170-171
    • Diamandis EP: Proteomic patterns in serum and identification of ovarian cancer. Lancet 360(9327), 170; author reply 170-171 (2002).
    • (2002) Lancet , vol.360 , Issue.9327 , pp. 170
    • Diamandis, E.P.1
  • 43
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments
    • Baggerly KA, Morris JS, Coombes KR: Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments. Bioinformatics 20(5), 777-785 (2004).
    • (2004) Bioinformatics , vol.20 , Issue.5 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 44
    • 13844316757 scopus 로고    scopus 로고
    • Signal in noise: Evaluating reported reproducibility of serum proteomic tests for ovarian cancer
    • Baggerly KA, Morris JS, Edmonson SR, Coombes KR: Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer. J. Natl Cancer Inst. 97(4), 307-309 (2005).
    • (2005) J. Natl. Cancer Inst. , vol.97 , Issue.4 , pp. 307-309
    • Baggerly, K.A.1    Morris, J.S.2    Edmonson, S.R.3    Coombes, K.R.4
  • 45
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cancer serum proteomic profiling
    • Sorace JM, Zhan M: A data review and re-assessment of ovarian cancer serum proteomic profiling. BMC Bioinformatics 4(1), 24 (2003).
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 24
    • Sorace, J.M.1    Zhan, M.2
  • 47
    • 4644237492 scopus 로고    scopus 로고
    • Combining CA 125 and SMR serum markers for diagnosis and early detection of ovarian carcinoma
    • McIntosh MW, Drescher C, Karlan B et al.: Combining CA 125 and SMR serum markers for diagnosis and early detection of ovarian carcinoma. Gynecol. Oncol. 95(1), 9-15 (2004).
    • (2004) Gynecol. Oncol. , vol.95 , Issue.1 , pp. 9-15
    • McIntosh, M.W.1    Drescher, C.2    Karlan, B.3
  • 48
    • 0038756386 scopus 로고    scopus 로고
    • The HE4 (WFDC2) protein is a biomarker for ovarian carcinoma
    • Hellstrom I, Raycraft J, Hayden-Ledbetter M et al.: The HE4 (WFDC2) protein is a biomarker for ovarian carcinoma. Cancer Res. 63(13), 3695-3700 (2003).
    • (2003) Cancer Res. , vol.63 , Issue.13 , pp. 3695-3700
    • Hellstrom, I.1    Raycraft, J.2    Hayden-Ledbetter, M.3
  • 49
    • 4143067096 scopus 로고    scopus 로고
    • Three biomarkers identified from serum proteomic analysis for the detection of early stage ovarian cancer
    • Zhang Z, Bast RC Jr, Yu Y et al.: Three biomarkers identified from serum proteomic analysis for the detection of early stage ovarian cancer. Cancer Res. 64(16), 5882-5890 (2004).
    • (2004) Cancer Res. , vol.64 , Issue.16 , pp. 5882-5890
    • Zhang, Z.1    Bast Jr., R.C.2    Yu, Y.3
  • 50
    • 0035902180 scopus 로고    scopus 로고
    • Oncogenic kinase signaling
    • Blume-Jensen P, Hunter T: Oncogenic kinase signaling. Nature 411(6835), 355-365 (2001).
    • (2001) Nature , vol.411 , Issue.6835 , pp. 355-365
    • Blume-Jensen, P.1    Hunter, T.2
  • 51
    • 0037487233 scopus 로고    scopus 로고
    • Proteomics in translational cancer research: Toward an integrated approach
    • Celis JE, Gromov P: Proteomics in translational cancer research: toward an integrated approach. Cancer Cell 3(1), 9-15 (2003).
    • (2003) Cancer Cell , vol.3 , Issue.1 , pp. 9-15
    • Celis, J.E.1    Gromov, P.2


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