-
1
-
-
0003415703
-
Identification of genes in human genomic DNA
-
[Ph.D. Thesis]. Stanford, CA, USA.: Stanford University
-
Burge C: Identification of genes in human genomic DNA. [Ph.D. Thesis]. Stanford, CA, USA.: Stanford University; 1997.
-
(1997)
-
-
Burge, C.1
-
2
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge C, Karlin S: Prediction of complete gene structures in human genomic DNA. Journal of Molecular Biology 1997, 268:78-94.
-
(1997)
Journal of Molecular Biology
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
4
-
-
0034098729
-
Genome annotation assessment in Drosophila melanogaster
-
Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, et al.: Genome annotation assessment in Drosophila melanogaster. Genome Research 2000, 10:483-501.
-
(2000)
Genome Research
, vol.10
, pp. 483-501
-
-
Reese, M.G.1
Hartzell, G.2
Harris, N.L.3
Ohler, U.4
Abril, J.F.5
-
5
-
-
0033931903
-
Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment
-
Hooper PM, Zhang H, Wishart DS: Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment. Bioinformatics 2000, 16:425-438.
-
(2000)
Bioinformatics
, vol.16
, pp. 425-438
-
-
Hooper, P.M.1
Zhang, H.2
Wishart, D.S.3
-
6
-
-
33644876924
-
Ensembl 2006
-
Birney E, Andrews D, Caccamo M, Chen Y, Clarke L, et al.: Ensembl 2006. Nucleic Acids Research 2006, 34:D556-561.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Birney, E.1
Andrews, D.2
Caccamo, M.3
Chen, Y.4
Clarke, L.5
-
7
-
-
2442706422
-
An overview of Ensembl
-
Birney E, Andrews TD, Bevan P, Caccamo M, Chen Y, et al.: An overview of Ensembl. Genome Research 2004, 14:925-928.
-
(2004)
Genome Research
, vol.14
, pp. 925-928
-
-
Birney, E.1
Andrews, T.D.2
Bevan, P.3
Caccamo, M.4
Chen, Y.5
-
8
-
-
84874648439
-
-
FishBase
-
FishBase [http://www.fishbase.org/]
-
-
-
-
10
-
-
33947428649
-
The genetics and genomics of cyprinids
-
In Edited by: Kole CR Kocher T. Berlin Germany: Springer Verlag in press
-
Orban L, Wu QJ: The genetics and genomics of cyprinids. In Genome Mapping in Fishes and Aquatic Animals Edited by: Kole CR Kocher T. Berlin Germany: Springer Verlag; 2006 in press.
-
(2006)
Genome Mapping in Fishes and Aquatic Animals
-
-
Orban, L.1
Wu, Q.J.2
-
11
-
-
0028398980
-
Molecular genetic aspects of tetraploidy in the common carp Cyprinus carpio
-
Larhammar D, Risinger C: Molecular genetic aspects of tetraploidy in the common carp Cyprinus carpio. Mol Phylogenet Evol 1994, 3:59-68.
-
(1994)
Mol Phylogenet Evol
, vol.3
, pp. 59-68
-
-
Larhammar, D.1
Risinger, C.2
-
12
-
-
0042836783
-
Recent duplication of the common carp (Cyprinus carpio L.) genome as revealed by analyses of microsatellite loci
-
David L, Blum S, Feldman MW, Lavi U, Hillel J: Recent duplication of the common carp (Cyprinus carpio L.) genome as revealed by analyses of microsatellite loci. Mol Biol Evol 2003, 20:1425-1434.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1425-1434
-
-
David, L.1
Blum, S.2
Feldman, M.W.3
Lavi, U.4
Hillel, J.5
-
13
-
-
0023821768
-
Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints
-
Tagle DA, Koop BF, Goodman M, Slightom JL, Hess DL, et al.: Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints. Journal of Molecular Biology 1988, 203:439-455.
-
(1988)
Journal of Molecular Biology
, vol.203
, pp. 439-455
-
-
Tagle, D.A.1
Koop, B.F.2
Goodman, M.3
Slightom, J.L.4
Hess, D.L.5
-
14
-
-
33646468497
-
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters
-
Lee AP, Koh EG, Tay A, Brenner S, Venkatesh B: Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. Proc Natl Acad Sci USA 2006, 103:6994-6999.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6994-6999
-
-
Lee, A.P.1
Koh, E.G.2
Tay, A.3
Brenner, S.4
Venkatesh, B.5
-
15
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, et al.: Comparative analyses of multi-species sequences from targeted genomic regions. Nature 2003, 424:788-793.
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
Touchman, J.W.2
Blakesley, R.W.3
Bouffard, G.G.4
Beckstrom-Sternberg, S.M.5
-
16
-
-
33646878378
-
Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs
-
Steinke D, Salzburger W, Meyer A: Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. Journal of Molecular Evolution 2006, 62:772-784.
-
(2006)
Journal of Molecular Evolution
, vol.62
, pp. 772-784
-
-
Steinke, D.1
Salzburger, W.2
Meyer, A.3
-
17
-
-
84874649590
-
-
UniGene
-
UniGene [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=unigene]
-
-
-
-
18
-
-
0027327152
-
The phylogenetic position of the zebrafish (Danio rerio), a model system in developmental biology - An invitation to the comparative method
-
Meyer A, Biermann CH, Orti G: The phylogenetic position of the zebrafish (Danio rerio), a model system in developmental biology - an invitation to the comparative method. Proceedings of the Royal Society of London Series B-Biological Sciences 1993, 252:231-236.
-
(1993)
Proceedings of the Royal Society of London Series B-Biological Sciences
, vol.252
, pp. 231-236
-
-
Meyer, A.1
Biermann, C.H.2
Orti, G.3
-
20
-
-
84874648498
-
-
dbEST
-
dbEST [http://www.ncbi.nlm.nih.gov/dbEST/]
-
-
-
-
21
-
-
84874652974
-
-
CarpBASE
-
CarpBASE [http://legr.liv.ac.uk/carpbase/index.htm]
-
-
-
-
22
-
-
0001078605
-
Origin and domestication of the wild carp, Cyprinus carpio - From Roman gourmets to the swimming flowers
-
Balon EK: Origin and domestication of the wild carp, Cyprinus carpio - from Roman gourmets to the swimming flowers. Aquaculture 1995, 129:3-48.
-
(1995)
Aquaculture
, vol.129
, pp. 3-48
-
-
Balon, E.K.1
-
23
-
-
11144228400
-
About the oldest domesticates among fishes
-
Balon EK: About the oldest domesticates among fishes. Journal of Fish Biology 2004, 65:1-27.
-
(2004)
Journal of Fish Biology
, vol.65
, pp. 1-27
-
-
Balon, E.K.1
-
24
-
-
58149321477
-
A review of genetic improvement of the common carp (Cyprinus carpio L.) and other cyprinids by crossbreeding, hybridization and selection
-
Hulata G: A review of genetic improvement of the common carp (Cyprinus carpio L.) and other cyprinids by crossbreeding, hybridization and selection. Aquaculture 1995, 129:143-155.
-
(1995)
Aquaculture
, vol.129
, pp. 143-155
-
-
Hulata, G.1
-
25
-
-
0001358412
-
Genome and gene manipulation in the common carp
-
Horvath L, Orban L: Genome and gene manipulation in the common carp. Aquaculture 1995, 129:157-181.
-
(1995)
Aquaculture
, vol.129
, pp. 157-181
-
-
Horvath, L.1
Orban, L.2
-
26
-
-
4444276059
-
Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools
-
Li Y, Chia JM, Bartfai R, Christoffels A, Yue GH, et al.: Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools. Comparative and Functional Genomics 2004, 5:403-418.
-
(2004)
Comparative and Functional Genomics
, vol.5
, pp. 403-418
-
-
Li, Y.1
Chia, J.M.2
Bartfai, R.3
Christoffels, A.4
Yue, G.H.5
-
27
-
-
33644875299
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL: GenBank. Nucleic Acids Research 2006, 34:D16-20.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
28
-
-
0033290515
-
ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
-
IseAi C, Jongeneel CV, Bucher P: ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. 1999:138-148.
-
(1999)
, pp. 138-148
-
-
Iseli, C.1
Jongeneel, C.V.2
Bucher, P.3
-
29
-
-
84874647566
-
-
The Danio rerio Sequencing Project
-
The Danio rerio Sequencing Project [http://www.sanger.ac.uk/Projects/ D_rerio/]
-
-
-
-
30
-
-
84874660488
-
-
Cyprinid Genome Browser TLL
-
Cyprinid Genome Browser TLL [http://www.bioinformatics.tll.org.sg/ Cyprinids/CyprinidMapping.html]
-
-
-
-
31
-
-
84874653631
-
-
EST2GENOME
-
EST2GENOME [http://bioweb.pasteur.fr/seqanal/interfaces/est2genome.html]
-
-
-
-
32
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek B, Lee C: A genomic view of alternative splicing. Nature Genetics 2002, 30:13-19.
-
(2002)
Nature Genetics
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
33
-
-
27644469082
-
Novel splice variants associated with one of the zebrafish dnmt3 genes
-
Smith TH, Dueck CC, Mhanni AA, McGowan RA: Novel splice variants associated with one of the zebrafish dnmt3 genes. BMC Developmental Biology 2005, 5:23.
-
(2005)
BMC Developmental Biology
, vol.5
, pp. 23
-
-
Smith, T.H.1
Dueck, C.C.2
Mhanni, A.A.3
McGowan, R.A.4
-
34
-
-
8144225362
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
-
Yeo G, Hoon S, Venkatesh B, Burge CB: Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci USA 2004, 101:15700-15705.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15700-15705
-
-
Yeo, G.1
Hoon, S.2
Venkatesh, B.3
Burge, C.B.4
-
35
-
-
0035179257
-
The contribution of exon-skipping events on chromosome 22 to protein coding diversity
-
Hide WA, Babenko VN, van Heusden PA, Seoighe C, Kelso JF: The contribution of exon-skipping events on chromosome 22 to protein coding diversity. Genome Research 2001, 11:1848-1853.
-
(2001)
Genome Research
, vol.11
, pp. 1848-1853
-
-
Hide, W.A.1
Babenko, V.N.2
van Heusden, P.A.3
Seoighe, C.4
Kelso, J.F.5
-
37
-
-
0032934035
-
Viable androgenetic YY genotypes of common carp (Cyprinus carpio L.)
-
Bongers ABJ, Zandieh-Doulabi B, Richter CJJ, Komen J: Viable androgenetic YY genotypes of common carp (Cyprinus carpio L.). Journal of Heredity 1999, 90:195-198.
-
(1999)
Journal of Heredity
, vol.90
, pp. 195-198
-
-
Bongers, A.B.J.1
Zandieh-Doulabi, B.2
Richter, C.J.J.3
Komen, J.4
-
38
-
-
84874654339
-
-
Repeatmasker
-
Repeatmasker [http://www.repeatmasker.org/]
-
-
-
-
39
-
-
0032727821
-
A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledge base
-
Miller RT, Christoffels AG, Gopalakrishnan C, Burke J, Ptitsyn AA, et al.: A comprehensive approach to clustering of expressed human gene sequence: The sequence tag alignment and consensus knowledge base. Genome Research 1999, 9:1143-1155.
-
(1999)
Genome Research
, vol.9
, pp. 1143-1155
-
-
Miller, R.T.1
Christoffels, A.G.2
Gopalakrishnan, C.3
Burke, J.4
Ptitsyn, A.A.5
-
40
-
-
0035172129
-
STACK: Sequence Tag Alignment and Consensus Knowledgebase
-
Christoffels A, van Gelder A, Greyling G, Miller R, Hide T, et al.: STACK: Sequence Tag Alignment and Consensus Knowledgebase. Nucleic Acids Research 2001, 29:234-238.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 234-238
-
-
Christoffels, A.1
van Gelder, A.2
Greyling, G.3
Miller, R.4
Hide, T.5
-
41
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
SigAist CJ, Cerutti L, Hulo N, Gattiker A, Falquet L, et al.: PROSITE: a documented database using patterns and profiles as motif descriptors. Briefings in Bioinformatics 2002, 3:265-274.
-
(2002)
Briefings in Bioinformatics
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
-
42
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, et al.: The Pfam protein families database. Nucleic Acids Research 2004, 32:D138-141.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
-
43
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, et al.: The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research 2003, 31:315-318.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
-
44
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR: Profile hidden Markov models. Bioinformatics 1998, 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
45
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Gene OC: Gene ontology: Tool for the unification of biology. Nature Genetics 2000, 25:25-29.
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Gene, O.C.1
-
46
-
-
84874665275
-
-
BLAST
-
BLAST [http://www.ncbi.nlm.nih.gov/BLAST/]
-
-
-
-
47
-
-
24744442248
-
An algorithm for ab initio DNA motif detection
-
In Edited by: Bajic VB, Tan TW. World Scientific, Singapore
-
Huang E, Yang L, Chowdhary R, Kassim A, Bajic VB: An algorithm for ab initio DNA motif detection. In Information Processing and Living Systems Edited by: Bajic VB, Tan TW. World Scientific, Singapore; 2005:611-614.
-
(2005)
Information Processing and Living Systems
, pp. 611-614
-
-
Huang, E.1
Yang, L.2
Chowdhary, R.3
Kassim, A.4
Bajic, V.B.5
-
48
-
-
84874647524
-
-
ClustalW
-
ClustalW [http://www.ebi.ac.uk/clustalw/]
-
-
-
|