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Volumn 31, Issue 5, 2007, Pages 402-409

Adsorption of His-tagged peptide to Ni, Cu and Au (1 0 0) surfaces: Molecular dynamics simulation

Author keywords

Adsorption; His tagged peptide; Molecular dynamics; Nanotechnology; Pair correlation function; Root mean square displacement deviation

Indexed keywords

ADSORPTION; COMPUTER SIMULATION; CORRELATION METHODS; MOLECULAR DYNAMICS; NICKEL COMPOUNDS; SOLVENTS;

EID: 33947217952     PISSN: 09557997     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.enganabound.2006.07.012     Document Type: Article
Times cited : (33)

References (34)
  • 1
    • 0035137061 scopus 로고    scopus 로고
    • Conformational changes of single molecules induced by scanning tunneling microscopy manipulation: a route to molecular switching
    • Moresco F., Meyer G., Rieder K.H., Tang H., Gourdon A., and Joachim C. Conformational changes of single molecules induced by scanning tunneling microscopy manipulation: a route to molecular switching. Phys Rev Lett 86 4 (2001) 672-675
    • (2001) Phys Rev Lett , vol.86 , Issue.4 , pp. 672-675
    • Moresco, F.1    Meyer, G.2    Rieder, K.H.3    Tang, H.4    Gourdon, A.5    Joachim, C.6
  • 2
    • 0037148862 scopus 로고    scopus 로고
    • Chiral recognition in dimerization of adsorbed cysteine observed by scanning tunnelling microscopy
    • Kühnle A., Linderoth T.R., Hammer B., and Besenbacher F. Chiral recognition in dimerization of adsorbed cysteine observed by scanning tunnelling microscopy. Nature 415 6874 (2002) 891-893
    • (2002) Nature , vol.415 , Issue.6874 , pp. 891-893
    • Kühnle, A.1    Linderoth, T.R.2    Hammer, B.3    Besenbacher, F.4
  • 4
    • 1342302795 scopus 로고    scopus 로고
    • The interaction of proteins with solid surfaces
    • Jeffrey J.G. The interaction of proteins with solid surfaces. Curr Opin Struct Biol 14 (2004) 110-115
    • (2004) Curr Opin Struct Biol , vol.14 , pp. 110-115
    • Jeffrey, J.G.1
  • 5
    • 0037197883 scopus 로고    scopus 로고
    • Emulating biology: building nanostructures from the bottom up
    • Seeman N.C., and Belcher A.M. Emulating biology: building nanostructures from the bottom up. Proc Natl Acad Sci USA 99 Suppl. 2 (2002) 6451-6455
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.SUPPL. 2 , pp. 6451-6455
    • Seeman, N.C.1    Belcher, A.M.2
  • 6
    • 0032661796 scopus 로고    scopus 로고
    • Constructing nanomechanical devices powered by biomolecular motors
    • Montemagno C., and Bachand G. Constructing nanomechanical devices powered by biomolecular motors. Nanotechnology 10 3 (1999) 225-231
    • (1999) Nanotechnology , vol.10 , Issue.3 , pp. 225-231
    • Montemagno, C.1    Bachand, G.2
  • 7
    • 0035845491 scopus 로고    scopus 로고
    • History dependence of protein adsorption kinetics
    • Calonder C., Tie Y., and Van Tassel P.R. History dependence of protein adsorption kinetics. Proc Natl Acad Sci USA 98 19 (2001) 10664-10669
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.19 , pp. 10664-10669
    • Calonder, C.1    Tie, Y.2    Van Tassel, P.R.3
  • 8
    • 0007830987 scopus 로고
    • Ellipsometry studies of fibronectin adsorption
    • Malmsten M. Ellipsometry studies of fibronectin adsorption. Colloids Surf B-Biointerfaces 3 6 (1995) 371-381
    • (1995) Colloids Surf B-Biointerfaces , vol.3 , Issue.6 , pp. 371-381
    • Malmsten, M.1
  • 9
    • 0343457899 scopus 로고    scopus 로고
    • Adsorption and relaxation kinetics of albumin and fibrinogen on hydrophobic surfaces: single-species and competitive behavior
    • Wertz C.F., and Santore M.M. Adsorption and relaxation kinetics of albumin and fibrinogen on hydrophobic surfaces: single-species and competitive behavior. Langmuir 15 26 (1999) 8884-8894
    • (1999) Langmuir , vol.15 , Issue.26 , pp. 8884-8894
    • Wertz, C.F.1    Santore, M.M.2
  • 11
    • 0037037945 scopus 로고    scopus 로고
    • Polymers near metal surfaces: selective adsorption and global conformations
    • Delle Site L., Abrams C.F., Alavi A., and Kremer K. Polymers near metal surfaces: selective adsorption and global conformations. Phys Rev Lett 89 15 (2002) 156103
    • (2002) Phys Rev Lett , vol.89 , Issue.15 , pp. 156103
    • Delle Site, L.1    Abrams, C.F.2    Alavi, A.3    Kremer, K.4
  • 12
    • 0037489582 scopus 로고    scopus 로고
    • Adsorption energies and geometries of phenol on the (1 1 1) surface of nickel: an ab initio study
    • Delle Site L., Alavi A., and Abrams C.F. Adsorption energies and geometries of phenol on the (1 1 1) surface of nickel: an ab initio study. Phys Rev B 67 19 (2003) 193406
    • (2003) Phys Rev B , vol.67 , Issue.19 , pp. 193406
    • Delle Site, L.1    Alavi, A.2    Abrams, C.F.3
  • 13
    • 0035840936 scopus 로고    scopus 로고
    • A DFT study of the adsorption of thiophene on Ni(1 0 0)
    • Mittendorfer F., and Hafner J. A DFT study of the adsorption of thiophene on Ni(1 0 0). Surf Sci 492 1-2 (2001) 27-33
    • (2001) Surf Sci , vol.492 , Issue.1-2 , pp. 27-33
    • Mittendorfer, F.1    Hafner, J.2
  • 14
    • 0000475772 scopus 로고    scopus 로고
    • Density-functional study of the adsorption of benzene on the (1 1 1) (1 0 0) and (1 1 0) surfaces of nickel
    • Mittendorfer F., and Hafner J. Density-functional study of the adsorption of benzene on the (1 1 1) (1 0 0) and (1 1 0) surfaces of nickel. Surf Sci 472 1-2 (2001) 133-153
    • (2001) Surf Sci , vol.472 , Issue.1-2 , pp. 133-153
    • Mittendorfer, F.1    Hafner, J.2
  • 15
    • 0036392715 scopus 로고    scopus 로고
    • Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics
    • Braun R., Sarikaya M., and Schulten K. Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics. J Biomater Sci Polym Ed 13 7 (2002) 747-757
    • (2002) J Biomater Sci Polym Ed , vol.13 , Issue.7 , pp. 747-757
    • Braun, R.1    Sarikaya, M.2    Schulten, K.3
  • 16
    • 18644365143 scopus 로고    scopus 로고
    • Molecular dynamics simulations on constraint metal binding peptides
    • Kantarci N., Tamerler C., Sarikaya M., Haliloglu T., and Doruker P. Molecular dynamics simulations on constraint metal binding peptides. Polymer 46 12 (2005) 4307-4313
    • (2005) Polymer , vol.46 , Issue.12 , pp. 4307-4313
    • Kantarci, N.1    Tamerler, C.2    Sarikaya, M.3    Haliloglu, T.4    Doruker, P.5
  • 17
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulating liquid water
    • William L.J., Jayaraman C., Jeffry D.M., Roger W.I., and Michael L.K. Comparison of simple potential functions for simulating liquid water. J Chem Phys 79 2 (1983) 926-935
    • (1983) J Chem Phys , vol.79 , Issue.2 , pp. 926-935
    • William, L.J.1    Jayaraman, C.2    Jeffry, D.M.3    Roger, W.I.4    Michael, L.K.5
  • 18
    • 0030589446 scopus 로고    scopus 로고
    • Molecular dynamics simulations of water/metal and water/vacuum interfaces with a polarizable water model
    • Kohlmeyer A., Spohr W., and Witschel E. Molecular dynamics simulations of water/metal and water/vacuum interfaces with a polarizable water model. Chem Phys 213 1-3 (1996) 211-216
    • (1996) Chem Phys , vol.213 , Issue.1-3 , pp. 211-216
    • Kohlmeyer, A.1    Spohr, W.2    Witschel, E.3
  • 20
    • 6344260593 scopus 로고
    • An all-atom empirical energy function for the simulation of nucleic-acids
    • Mackerell A.D., Wiorkiewiczkuczera J., and Karplus M. An all-atom empirical energy function for the simulation of nucleic-acids. J Am Chem Soc 117 48 (1995) 11946-11975
    • (1995) J Am Chem Soc , vol.117 , Issue.48 , pp. 11946-11975
    • Mackerell, A.D.1    Wiorkiewiczkuczera, J.2    Karplus, M.3
  • 23
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
    • Ryckaert J.P., Ciccotti G., and Berendsen H.J.C. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23 3 (1977) 327-341
    • (1977) J Comput Phys , vol.23 , Issue.3 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 24
    • 0030059225 scopus 로고    scopus 로고
    • Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force
    • Grubmüller H., Heymann B., and Tavan P. Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science 271 5251 (1996) 997-999
    • (1996) Science , vol.271 , Issue.5251 , pp. 997-999
    • Grubmüller, H.1    Heymann, B.2    Tavan, P.3
  • 25
    • 0033531109 scopus 로고    scopus 로고
    • Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy
    • Merkel R., Nassoy P., Leung A., Ritchire K., and Evans E. Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy. Nature 397 6714 (1999) 50-53
    • (1999) Nature , vol.397 , Issue.6714 , pp. 50-53
    • Merkel, R.1    Nassoy, P.2    Leung, A.3    Ritchire, K.4    Evans, E.5
  • 27
    • 51149211502 scopus 로고
    • Improved simulation of liquid water by molecular dynamics
    • Stillinger F.H., and Rahman A. Improved simulation of liquid water by molecular dynamics. J Chem Phys 60 4 (1974) 1545-1557
    • (1974) J Chem Phys , vol.60 , Issue.4 , pp. 1545-1557
    • Stillinger, F.H.1    Rahman, A.2
  • 28
    • 0842301419 scopus 로고    scopus 로고
    • Deformation of DNA molecules by hydrodynamics focusing
    • Wong P.K., Lee Y.K., and Ho C.M. Deformation of DNA molecules by hydrodynamics focusing. J Fluid Mech 497 (2003) 55-65
    • (2003) J Fluid Mech , vol.497 , pp. 55-65
    • Wong, P.K.1    Lee, Y.K.2    Ho, C.M.3
  • 29
    • 28544438211 scopus 로고    scopus 로고
    • Molecular dynamics simulation of barnacle cement
    • Yin J., Zhao Y.P., and Zhu R.Z. Molecular dynamics simulation of barnacle cement. Mater Sci Eng A 409 1-2 (2005) 160-166
    • (2005) Mater Sci Eng A , vol.409 , Issue.1-2 , pp. 160-166
    • Yin, J.1    Zhao, Y.P.2    Zhu, R.Z.3
  • 30
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith S.B., Cui Y.J., and Bustamante C. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271 5250 (1996) 795-799
    • (1996) Science , vol.271 , Issue.5250 , pp. 795-799
    • Smith, S.B.1    Cui, Y.J.2    Bustamante, C.3
  • 31
    • 23444434530 scopus 로고    scopus 로고
    • Molecular dynamics simulation of peeling a DNA molecule on substrate
    • Shi X.H., Kong Y., Zhao Y.P., and Gao H.J. Molecular dynamics simulation of peeling a DNA molecule on substrate. Acta Mech Sin 21 3 (2005) 249-256
    • (2005) Acta Mech Sin , vol.21 , Issue.3 , pp. 249-256
    • Shi, X.H.1    Kong, Y.2    Zhao, Y.P.3    Gao, H.J.4
  • 33
    • 1542316814 scopus 로고    scopus 로고
    • BPA-PC on a Ni(1 1 1) surface: the interplay between adsorption energy and conformational entropy for different chain-end modifications
    • Delle Site L., Leon S., and Kremer K. BPA-PC on a Ni(1 1 1) surface: the interplay between adsorption energy and conformational entropy for different chain-end modifications. J Am Chem Soc 126 9 (2004) 2944-2955
    • (2004) J Am Chem Soc , vol.126 , Issue.9 , pp. 2944-2955
    • Delle Site, L.1    Leon, S.2    Kremer, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.