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Volumn 21, Issue 3, 2005, Pages 249-256

Molecular dynamics simulation of peeling a DNA molecule on substrate

Author keywords

Adhesion; DNA; Molecular dynamics simulation; Peeling

Indexed keywords

ADHESION; ADHESIVES; DNA; ELASTICITY; GRAPHITE; PEELING;

EID: 23444434530     PISSN: 05677718     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10409-005-0027-9     Document Type: Article
Times cited : (35)

References (36)
  • 1
    • 0012392952 scopus 로고    scopus 로고
    • Semiconductor nanocrystals as fluorescent biological labels
    • Bruchez, M, Moronne, M, Gin, P, Weiss, S, Alivisatos, AP: Semiconductor nanocrystals as fluorescent biological labels. Science, 281: 2013-2016 (1998)
    • (1998) Science , vol.281 , pp. 2013-2016
    • Bruchez, M.1    Moronne, M.2    Gin, P.3    Weiss, S.4    Alivisatos, A.P.5
  • 2
    • 0032566763 scopus 로고    scopus 로고
    • Quantum dot bioconjugates for ultrasensitive non-isotopic detection
    • Chan, W, Nie, S: Quantum dot bioconjugates for ultrasensitive non-isotopic detection. Science, 281: 2016-2018 (1998)
    • (1998) Science , vol.281 , pp. 2016-2018
    • Chan, W.1    Nie, S.2
  • 3
    • 0032474758 scopus 로고    scopus 로고
    • Covalently functionalised nanotubes as nanometre-sized probes in chemistry and biology
    • Wong, SS, Joselevich, E, Woolley, AT, Cheung, CL, Lieber, CM: Covalently functionalised nanotubes as nanometre-sized probes in chemistry and biology. Nature, 394: 52-55 (1998)
    • (1998) Nature , vol.394 , pp. 52-55
    • Wong, S.S.1    Joselevich, E.2    Woolley, A.T.3    Cheung, C.L.4    Lieber, C.M.5
  • 4
    • 0034622970 scopus 로고    scopus 로고
    • Scanometric DNA array detection with nanoparticle probes
    • Taton, T, Mirkin, C, Letsinger, R: Scanometric DNA array detection with nanoparticle probes. Science, 289: 1757-1760 (2000)
    • (2000) Science , vol.289 , pp. 1757-1760
    • Taton, T.1    Mirkin, C.2    Letsinger, R.3
  • 5
    • 0035902938 scopus 로고    scopus 로고
    • Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species
    • Cui, Y, Wei, Q, Park, H, Lieber, CM: Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species. Science, 293: 1289-1292 (2001)
    • (2001) Science , vol.293 , pp. 1289-1292
    • Cui, Y.1    Wei, Q.2    Park, H.3    Lieber, C.M.4
  • 6
    • 0038262624 scopus 로고    scopus 로고
    • Toward large arrays of multiplex functionalized carbon nanotube sensors for highly sensitive and selective molecular detection
    • Qi, P, Vermesh, O, Grecu, M, Javey, A, Wang, Q, Dai, H: Toward large arrays of multiplex functionalized carbon nanotube sensors for highly sensitive and selective molecular detection. Nano Lett, 3:347-351 (2003)
    • (2003) Nano Lett , vol.3 , pp. 347-351
    • Qi, P.1    Vermesh, O.2    Grecu, M.3    Javey, A.4    Wang, Q.5    Dai, H.6
  • 7
    • 0035915124 scopus 로고    scopus 로고
    • Nanoparticles, proteins, and nucleic acids: Biotechnology meets materials science
    • Miemeyer, CM: Nanoparticles, proteins, and nucleic acids: biotechnology meets materials science. Angew Chem Int Ed, 40: 4128-4158 (2001)
    • (2001) Angew Chem Int Ed , vol.40 , pp. 4128-4158
    • Miemeyer, C.M.1
  • 9
    • 0035124538 scopus 로고    scopus 로고
    • DNA-mediated artificial nanobiostructures: State of the art and future directions
    • Bashir, R: DNA-mediated artificial nanobiostructures: state of the art and future directions. Superlattice and Microstructures, 29: 1-16(2001)
    • (2001) Superlattice and Microstructures , vol.29 , pp. 1-16
    • Bashir, R.1
  • 10
    • 0037960906 scopus 로고    scopus 로고
    • DNA-templated nanotube localization
    • Xin, H, Woolley, AT: DNA-templated nanotube localization. J Am Chem Soc, 125: 8710-8711 (2003)
    • (2003) J Am Chem Soc , vol.125 , pp. 8710-8711
    • Xin, H.1    Woolley, A.T.2
  • 11
    • 0037466613 scopus 로고    scopus 로고
    • Casting metal nanowires within discrete self-assembled peptide nanotubes
    • Reches, M, Gazit, E: Casting metal nanowires within discrete self-assembled peptide nanotubes. Science, 300: 625-627 (2003)
    • (2003) Science , vol.300 , pp. 625-627
    • Reches, M.1    Gazit, E.2
  • 12
    • 0016552236 scopus 로고
    • Thin-film peeling the elastic term
    • Kendall, K: Thin-film peeling the elastic term. J Phys D: Appl Phys, 8: 1449-1452(1975)
    • (1975) J Phys D: Appl Phys , vol.8 , pp. 1449-1452
    • Kendall, K.1
  • 13
    • 36149056611 scopus 로고
    • The adhesion and surface energy of elastic solids
    • Kendall, K: The adhesion and surface energy of elastic solids. J Phys D: Appl Phys, 4: 1186-1195 (1971)
    • (1971) J Phys D: Appl Phys , vol.4 , pp. 1186-1195
    • Kendall, K.1
  • 14
    • 0000095401 scopus 로고
    • Transition between cohesive and interfacial failure in a laminate
    • Kendall, K: Transition between cohesive and interfacial failure in a laminate. Proc R Soc A, 344: 287-302 (1975)
    • (1975) Proc R Soc A , vol.344 , pp. 287-302
    • Kendall, K.1
  • 15
    • 0015198957 scopus 로고
    • Ozone attack at a rubber-metal bond
    • Lindley, PB: Ozone attack at a rubber-metal bond. J Instn Rubb Ind, 5(6): 243-248 (1971)
    • (1971) J Instn Rubb Ind , vol.5 , Issue.6 , pp. 243-248
    • Lindley, P.B.1
  • 16
    • 6344260593 scopus 로고
    • An all-atom empirical energy function for the simulation of nucleic acids
    • MacKerell, Jr AD, Wi-rkiewicz-Kuczera, J, Karplus, M: An all-atom empirical energy function for the simulation of nucleic acids. J Am Chem Soc, 117: 11946-11975(1995)
    • (1995) J Am Chem Soc , vol.117 , pp. 11946-11975
    • MacKerell, Jr.A.D.1    Wi-Rkiewicz-Kuczera, J.2    Karplus, M.3
  • 18
    • 0042041206 scopus 로고
    • UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
    • Rappe, AK, Casewit, CJ, Colwell, KS, Goddard, III WA, Skiff, WM: UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations. J Am Chem Soc, 114: 10024-10035 (1992)
    • (1992) J Am Chem Soc , vol.114 , pp. 10024-10035
    • Rappe, A.K.1    Casewit, C.J.2    Colwell, K.S.3    Goddard III, W.A.4    Skiff, W.M.5
  • 19
    • 0035909712 scopus 로고    scopus 로고
    • Carbon nanotubes in water: Structural characteristics and energetics
    • Walther, JH, Jaffe, R, Halicioglu, Koumoutsakos, P: Carbon nanotubes in water: structural characteristics and energetics. J Phys Chem B, 105: 9980-9987 (2001)
    • (2001) J Phys Chem B , vol.105 , pp. 9980-9987
    • Walther, J.H.1    Jaffe, R.2    Halicioglu3    Koumoutsakos, P.4
  • 22
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, JP, Cicotti, G, Berensden, HJC: Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comp Phys, 23: 327-341 (1977)
    • (1977) J Comp Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Cicotti, G.2    Berensden, H.J.C.3
  • 23
    • 0000432120 scopus 로고
    • The potential calculation and some applications
    • Honeycutt, RW: The potential calculation and some applications. Methods in Computational Physics, 9: 136-211 (1970)
    • (1970) Methods in Computational Physics , vol.9 , pp. 136-211
    • Honeycutt, R.W.1
  • 24
    • 0030059225 scopus 로고    scopus 로고
    • Ligand binding: Molecular mechanics calculation of the streptavidin-biotin rupture force
    • Grubmüller, H, Heymann, B, Tavan, P: Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science, 271: 997-999 (1996)
    • (1996) Science , vol.271 , pp. 997-999
    • Grubmüller, H.1    Heymann, B.2    Tavan, P.3
  • 25
    • 0013412734 scopus 로고    scopus 로고
    • AN02/DNP-hapten unbinding forces studied by molecular dynamics atomic force microscopy simulations
    • Heymann, B, Grubmüller, H: AN02/DNP-hapten unbinding forces studied by molecular dynamics atomic force microscopy simulations. Chem Phys Lett, 303: 1-9 (1999)
    • (1999) Chem Phys Lett , vol.303 , pp. 1-9
    • Heymann, B.1    Grubmüller, H.2
  • 26
    • 0030987036 scopus 로고    scopus 로고
    • Molecular dynamics study of unbinding of the avidin-biotin complex
    • Izrailev, S, Stepaniants, S, Balsera, M, Ono, Y, Schulten, K: Molecular dynamics study of unbinding of the avidin-biotin complex. Biophys J, 72: 1568-1581 (1997)
    • (1997) Biophys J , vol.72 , pp. 1568-1581
    • Izrailev, S.1    Stepaniants, S.2    Balsera, M.3    Ono, Y.4    Schulten, K.5
  • 27
    • 0031880829 scopus 로고    scopus 로고
    • Adhesion forces of lipids in a phospholipid membrand studied by molecular dynamics simulations
    • Marrink, SJ, Berger, O, Tieleman, P, Jahnig, F: Adhesion forces of lipids in a phospholipid membrand studied by molecular dynamics simulations. Biophys J, 74: 931-943 (1998)
    • (1998) Biophys J , vol.74 , pp. 931-943
    • Marrink, S.J.1    Berger, O.2    Tieleman, P.3    Jahnig, F.4
  • 28
    • 0031001349 scopus 로고    scopus 로고
    • Dynamic strength of molecular adhesion bonds
    • Evans, E, Ritchrie, K: Dynamic strength of molecular adhesion bonds. Biophys J, 72: 1541-1555 (1997)
    • (1997) Biophys J , vol.72 , pp. 1541-1555
    • Evans, E.1    Ritchrie, K.2
  • 29
    • 0033531109 scopus 로고    scopus 로고
    • Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy
    • Merkel, R, Nassoy, P, Leung, A, Ritchrie, K, Evans, E: Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy. Nature, 397: 50-53 (1999)
    • (1999) Nature , vol.397 , pp. 50-53
    • Merkel, R.1    Nassoy, P.2    Leung, A.3    Ritchrie, K.4    Evans, E.5
  • 31
    • 0032206324 scopus 로고    scopus 로고
    • Molecular mechanics study of hydrogen bonded self-assembled adenine monolayers on graphite
    • Edelwirth, M, Freund, J, Sowerby, SJ, Heckl, WM: Molecular mechanics study of hydrogen bonded self-assembled adenine monolayers on graphite. Surf. Sci, 417: 201-209 (1998)
    • (1998) Surf. Sci , vol.417 , pp. 201-209
    • Edelwirth, M.1    Freund, J.2    Sowerby, S.J.3    Heckl, W.M.4
  • 32
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith, S, Cui, Y, Bustamante, C: Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science, 271: 795-799 (1996)
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.1    Cui, Y.2    Bustamante, C.3
  • 33
    • 0034594940 scopus 로고    scopus 로고
    • Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
    • Wuite, G, Smith, S, Young, M, Keller, D, Bustamante, C: Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature, 404: 103-106 (2000)
    • (2000) Nature , vol.404 , pp. 103-106
    • Wuite, G.1    Smith, S.2    Young, M.3    Keller, D.4    Bustamante, C.5
  • 34
    • 0034710990 scopus 로고    scopus 로고
    • Replication by a single DNA polymerase of a stretched single-stranded DNA
    • Maier, B, Bensimon, D, Croquette, V: Replication by a single DNA polymerase of a stretched single-stranded DNA. Proc Natl Acad Sci USA, 97: 12002-12007 (2000)
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 12002-12007
    • Maier, B.1    Bensimon, D.2    Croquette, V.3
  • 36
    • 0018101150 scopus 로고
    • Models for the specific adhesion of cells to cells
    • Bell, G: Models for the specific adhesion of cells to cells. Science, 200: 618-627 (1978)
    • (1978) Science , vol.200 , pp. 618-627
    • Bell, G.1


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