-
1
-
-
0027249595
-
dbEST - Database for "expressed sequence tags"
-
10.1038/ng0893-332 8401577
-
Boguski MS Lowe TM Tolstoshev CM dbEST - database for "expressed sequence tags" Nat Genet 1993 4 4 332-333 10.1038/ng0893-332 8401577
-
(1993)
Nat Genet
, vol.4
, Issue.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstoshev, C.M.3
-
2
-
-
0035161543
-
Genomes OnLine Database (GOLD): A monitor of genome projects world-wide
-
29859 11125068 10.1093/nar/29.1.126
-
Bernal A Ear U Kyrpides N Genomes OnLine Database (GOLD): A monitor of genome projects world-wide Nucleic Acids Res 2001 29 1 126-127 29859 11125068 10.1093/nar/29.1.126
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 126-127
-
-
Bernal, A.1
Ear, U.2
Kyrpides, N.3
-
5
-
-
0035972742
-
Multiple alignment of complete sequences (MACS) in the post-genomic era
-
10.1016/S0378-1119(01)00461-9 11403999
-
Lecompte O Thompson JD Plewniak F Thierry J Poch O Multiple alignment of complete sequences (MACS) in the post-genomic era Gene 2001 270 1-2 17-30 10.1016/S0378-1119(01)00461-9 11403999
-
(2001)
Gene
, vol.270
, Issue.1-2
, pp. 17-30
-
-
Lecompte, O.1
Thompson, J.D.2
Plewniak, F.3
Thierry, J.4
Poch, O.5
-
6
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
148477 10373585 10.1093/nar/27.13.2682
-
Thompson JD Plewniak F Poch O A comprehensive comparison of multiple sequence alignment programs Nucleic Acids Res 1999 27 13 2682-2690 148477 10373585 10.1093/nar/27.13.2682
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.13
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
7
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Database issue 1347523 16381842 10.1093/nar/gkj161
-
Wu CH Apweiler R Bairoch A Natale DA Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Mazumder R O'Donovan C Redaschi N Suzek B The Universal Protein Resource (UniProt): An expanding universe of protein information Nucleic Acids Res 2006 34 Database issue D187-91 1347523 16381842 10.1093/nar/gkj161
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
Ferro, S.7
Gasteiger, E.8
Huang, H.9
Lopez, R.10
Magrane, M.11
Martin, M.J.12
Mazumder, R.13
O'Donovan, C.14
Redaschi, N.15
Suzek, B.16
-
8
-
-
0043122933
-
UniqueProt: Creating representative protein sequence sets
-
169026
-
Mika S Rost B UniqueProt: Creating representative protein sequence sets Nucleic Acids Res 2003 31 13 3789 3791 169026 12824419 10.1093/nar/gkg620
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3789-3791
-
-
Mika, S.1
Rost, B.2
-
9
-
-
3242877635
-
BLAST Filter and GraphAlign: Rule-based formation and analysis of sets of related DNA and protein sequences
-
441597
-
Spalding JB Lammers PJ BLAST Filter and GraphAlign: Rule-based formation and analysis of sets of related DNA and protein sequences Nucleic Acids Res 2004 32 Web Server issue W26 32 441597 15215343 10.1093/nar/gkh459
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Spalding, J.B.1
Lammers, P.J.2
-
10
-
-
32144437402
-
A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins
-
10.1093/bioinformatics/bti791 16303797
-
Mihalek I Res I Lichtarge O A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins Bioinformatics 2006 22 2 149-156 10.1093/bioinformatics/bti791 16303797
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 149-156
-
-
Mihalek, I.1
Res, I.2
Lichtarge, O.3
-
11
-
-
0033954256
-
The Protein Data Bank
-
102472 10592235 10.1093/nar/28.1.235
-
Berman HM Westbrook J Feng Z Gilliland G Bhat TN Weissig H Shindyalov IN Bourne PE The Protein Data Bank Nucleic Acids Res 2000 28 1 235-242 102472 10592235 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
12
-
-
0036467068
-
Alignments grow, secondary structure prediction improves
-
10.1002/prot.10029 11807948
-
Przybylski D Rost B Alignments grow, secondary structure prediction improves Proteins 2002 46 2 197-205 10.1002/prot.10029 11807948
-
(2002)
Proteins
, vol.46
, Issue.2
, pp. 197-205
-
-
Przybylski, D.1
Rost, B.2
-
13
-
-
0035824873
-
Towards a reliable objective function for multiple sequence alignments
-
10.1006/jmbi.2001.5187 11734009
-
Thompson JD Plewniak F Ripp R Thierry JC Poch O Towards a reliable objective function for multiple sequence alignments J Mol Biol 2001 314 4 937-951 10.1006/jmbi.2001.5187 11734009
-
(2001)
J Mol Biol
, vol.314
, Issue.4
, pp. 937-951
-
-
Thompson, J.D.1
Plewniak, F.2
Ripp, R.3
Thierry, J.C.4
Poch, O.5
-
14
-
-
0011542799
-
The Pfam protein families database
-
99071 11752314 10.1093/nar/30.1.276
-
Bateman A Birney E Cerruti L Durbin R Etwiller L Eddy SR Griffiths-Jones S Howe KL Marshall M Sonnhammer EL The Pfam protein families database Nucleic Acids Res 2002 30 1 276-280 99071 11752314 10.1093/nar/30.1.276
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
15
-
-
0043122907
-
PipeAlign: A new toolkit for protein family analysis
-
168925 12824430 10.1093/nar/gkg518
-
Plewniak F Bianchetti L Brelivet Y Carles A Chalmel F Lecompte O Mochel T Moulinier L Muller A Muller J Prigent V Ripp R Thierry JC Thompson JD Wicker N Poch O PipeAlign: A new toolkit for protein family analysis Nucleic Acids Res 2003 31 13 3829-3832 168925 12824430 10.1093/nar/gkg518
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3829-3832
-
-
Plewniak, F.1
Bianchetti, L.2
Brelivet, Y.3
Carles, A.4
Chalmel, F.5
Lecompte, O.6
Mochel, T.7
Moulinier, L.8
Muller, A.9
Muller, J.10
Prigent, V.11
Ripp, R.12
Thierry, J.C.13
Thompson, J.D.14
Wicker, N.15
Poch, O.16
-
16
-
-
33750736013
-
The accuracy of several multiple sequence alignment programs for proteins
-
1633746 17062146 10.1186/1471-2105-7-471
-
Nuin PA Wang Z Tillier ER The accuracy of several multiple sequence alignment programs for proteins BMC Bioinformatics 2006 7 471 1633746 17062146 10.1186/1471-2105-7-471
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 471
-
-
Nuin, P.A.1
Wang, Z.2
Tillier, E.R.3
-
17
-
-
24644457706
-
BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark
-
10.1002/prot.20527 16044462
-
Thompson JD Koehl P Ripp R Poch O BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark Proteins 2005 61 1 127-136 10.1002/prot.20527 16044462
-
(2005)
Proteins
, vol.61
, Issue.1
, pp. 127-136
-
-
Thompson, J.D.1
Koehl, P.2
Ripp, R.3
Poch, O.4
-
18
-
-
0345062357
-
Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
-
10.1006/jmbi.1999.2911 10438614
-
Mirny LA Shakhnovich EI Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function J Mol Biol 1999 291 1 177-196 10.1006/jmbi.1999.2911 10438614
-
(1999)
J Mol Biol
, vol.291
, Issue.1
, pp. 177-196
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
19
-
-
0036435882
-
Analysis of catalytic residues in enzyme active sites
-
10.1016/S0022-2836(02)01036-7 12421562
-
Bartlett GJ Porter CT Borkakoti N Thornton JM Analysis of catalytic residues in enzyme active sites J Mol Biol 2002 324 1 105-121 10.1016/ S0022-2836(02)01036-7 12421562
-
(2002)
J Mol Biol
, vol.324
, Issue.1
, pp. 105-121
-
-
Bartlett, G.J.1
Porter, C.T.2
Borkakoti, N.3
Thornton, J.M.4
-
20
-
-
0001290841
-
Glossary of Terms
-
10.1023/A:1017181826899
-
Kohavi R Provost F Glossary of Terms Machine Learning 1998 30 271-274 10.1023/A:1017181826899
-
(1998)
Machine Learning
, vol.30
, pp. 271-274
-
-
Kohavi, R.1
Provost, F.2
-
21
-
-
0031998121
-
Machine learning for the detection of oil spills in satellite radar images
-
10.1023/A:1007452223027
-
Kubat M Holte RC Matwin S Machine learning for the detection of oil spills in satellite radar images Machine Learning 1998 30 195-215 10.1023/A:1007452223027
-
(1998)
Machine Learning
, vol.30
, pp. 195-215
-
-
Kubat, M.1
Holte, R.C.2
Matwin, S.3
-
22
-
-
0035838976
-
Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
-
10.1006/jmbi.2001.4870 11478868
-
Aloy P Querol E Aviles FX Sternberg MJ Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking J Mol Biol 2001 311 2 395-408 10.1006/ jmbi.2001.4870 11478868
-
(2001)
J Mol Biol
, vol.311
, Issue.2
, pp. 395-408
-
-
Aloy, P.1
Querol, E.2
Aviles, F.X.3
Sternberg, M.J.4
-
23
-
-
0037246767
-
The CATH database: An extended protein family resource for structural and functional genomics
-
165509 12520050 10.1093/nar/gkg062
-
Pearl FM Bennett CF Bray JE Harrison AP Martin N Shepherd A Sillitoe I Thornton J Orengo CA The CATH database: An extended protein family resource for structural and functional genomics Nucleic Acids Res 2003 31 1 452-455 165509 12520050 10.1093/nar/gkg062
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 452-455
-
-
Pearl, F.M.1
Bennett, C.F.2
Bray, J.E.3
Harrison, A.P.4
Martin, N.5
Shepherd, A.6
Sillitoe, I.7
Thornton, J.8
Orengo, C.A.9
-
24
-
-
0027665850
-
Enzyme nomenclature: A personal retrospective
-
8375619
-
Webb EC Enzyme nomenclature: A personal retrospective Faseb J 1993 7 12 1192-1194 8375619
-
(1993)
Faseb J
, vol.7
, Issue.12
, pp. 1192-1194
-
-
Webb, E.C.1
-
25
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
Database issue 308865 14681372 10.1093/nar/gkh131
-
Apweiler R Bairoch A Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Natale DA O'Donovan C Redaschi N Yeh LS UniProt: The Universal Protein knowledgebase Nucleic Acids Res 2004 32 Database issue D115-9 308865 14681372 10.1093/nar/gkh131
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
26
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997 25 17 3389-3402 146917 9254694 10.1093/ nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
27
-
-
0029906607
-
Dirichlet mixtures: A method for improved detection of weak but significant protein sequence homology
-
8902360
-
Sjolander K Karplus K Brown M Hughey R Krogh A Mian IS Haussler D Dirichlet mixtures: A method for improved detection of weak but significant protein sequence homology Comput Appl Biosci 1996 12 4 327-345 8902360
-
(1996)
Comput Appl Biosci
, vol.12
, Issue.4
, pp. 327-345
-
-
Sjolander, K.1
Karplus, K.2
Brown, M.3
Hughey, R.4
Krogh, A.5
Mian, I.S.6
Haussler, D.7
-
28
-
-
0034897827
-
Secator: A program for inferring protein subfamilies from phylogenetic trees
-
11470834
-
Wicker N Perrin GR Thierry JC Poch O Secator: A program for inferring protein subfamilies from phylogenetic trees Mol Biol Evol 2001 18 8 1435-1441 11470834
-
(2001)
Mol Biol Evol
, vol.18
, Issue.8
, pp. 1435-1441
-
-
Wicker, N.1
Perrin, G.R.2
Thierry, J.C.3
Poch, O.4
-
29
-
-
0033675717
-
Ballast: Blast post-processing based on locally conserved segments
-
10.1093/bioinformatics/16.9.750 11108697
-
Plewniak F Thompson JD Poch O Ballast: Blast post-processing based on locally conserved segments Bioinformatics 2000 16 9 750-759 10.1093/ bioinformatics/16.9.750 11108697
-
(2000)
Bioinformatics
, vol.16
, Issue.9
, pp. 750-759
-
-
Plewniak, F.1
Thompson, J.D.2
Poch, O.3
-
30
-
-
0034255358
-
DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
-
102675 10908355 10.1093/nar/28.15.2919
-
Thompson JD Plewniak F Thierry J Poch O DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches Nucleic Acids Res 2000 28 15 2919-2926 102675 10908355 10.1093/ nar/28.15.2919
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.15
, pp. 2919-2926
-
-
Thompson, J.D.1
Plewniak, F.2
Thierry, J.3
Poch, O.4
-
31
-
-
0038391401
-
RASCAL: Rapid scanning and correction of multiple sequence alignments
-
10.1093/bioinformatics/btg133 12801878
-
Thompson JD Thierry JC Poch O RASCAL: Rapid scanning and correction of multiple sequence alignments Bioinformatics 2003 19 9 1155-1161 10.1093/ bioinformatics/btg133 12801878
-
(2003)
Bioinformatics
, vol.19
, Issue.9
, pp. 1155-1161
-
-
Thompson, J.D.1
Thierry, J.C.2
Poch, O.3
-
32
-
-
0037339236
-
Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures
-
10.1093/bioinformatics/btg016 12611806
-
Errami M Geourjon C Deleage G Detection of unrelated proteins in sequences multiple alignments by using predicted secondary structures Bioinformatics 2003 19 4 506-512 10.1093/bioinformatics/btg016 12611806
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 506-512
-
-
Errami, M.1
Geourjon, C.2
Deleage, G.3
-
33
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
7063747
-
Hanley JA McNeil BJ The meaning and use of the area under a receiver operating characteristic (ROC) curve Radiology 1982 143 1 29-36 7063747
-
(1982)
Radiology
, vol.143
, Issue.1
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
|