Technologies for the analysis of single nucleotide polymorphisms-an overview

Pharmacogenomics, Second Edition

Volumn , Issue , 2005, Pages 305-312

  Grant, Denis M ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33947146357     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (15)

1. Prince JA, Feuk L, HowellWM, Jobs M, Emahazion T, Blennow K, Brookes AJ. Robust and accurate single nucleotide polymorphism genotyping by dynamic allele-specific hybridization (DASH): design criteria and assay validation. Genome Res 2001; 11: 152-162.
2. Jobs M, Howell WM, Stromqvist L, Mayr T, Brookes AJ. DASH-2: flexible, low-cost, and high-throughput SNP genotyping by dynamic allele-specific hybridization on membrane arrays. Genome Res 2003; 13: 916-924.
3. Fakhrai-Rad H, Pourmand N, Ronaghi M. Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms. Hum Mutat 2002; 19: 479-485.
4. Suomalainen A, Syvanen AC. Analysis of nucleotide sequence variations by solid-phase minisequencing. Methods Mol Biol 2003; 226: 361-366.
5. See D, Kanazin V, Talbert H, Blake T. Electrophoretic detection of singlenucleotide polymorphisms. Biotechniques 2000; 28: 710-714, 716.
6. IannoneMA, Taylor JD, Chen J, Li MS, Rivers P, Slentz-Kesler KA, Weiner MP. Multiplexed single nucleotide polymorphism genotyping by oligonucleotide ligation and flow cytometry. Cytometry 2000; 39: 131-140.
7. Olivier M, Chuang LM, Chang MS, Chen YT, Pei D, Ranade K, de Witte A, Allen J, Tran N, Curb D, Pratt R, Neefs H, de Arruda Indig M, Law S, Neri B, Wang L, Cox DR. High-throughput genotyping of single nucleotide polymorphisms using new biplex invader technology. Nucleic Acids Res 2002; 30: e53.
8. Latif S, Bauer-Sardina I, Ranade K, Livak KJ, Kwok PY. Fluorescence polarization in homogeneous nucleic acid analysis II: 50-nuclease assay. Genome Res 2001; 11: 436-440.
9. Bray MS, Boerwinkle E, Doris PA. High-throughput multiplex SNP genotyping with MALDI-TOF mass spectrometry: practice, problems and promise. Hum Mutat 2001; 17: 296-304.
10. Liljedahl U, Karlsson J, Melhus H, Kurland L, Lindersson M, Kahan T, Nystrom F, Lind L, Syvanen AC. A microarray minisequencing system for pharmacogenetic profiling of antihypertensive drug response. Pharmacogenetics 2003; 13: 7-17.
11. Kwok PY. SNP genotyping with fluorescence polarization detection. Hum Mutat 2002; 19: 315-323.
12. Mhlanga MM, Malmberg L. Using molecular beacons to detect singlenucleotide polymorphisms with real-time PCR. Methods 2001; 25: 463-471.
13. Allen M, Divne AM. Universal tag arrays in forensic SNP analysis. Methods Mol Biol 2004; 297: 141-154.
14. Chen J, Iannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP. A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res 2000; 10: 549-557.
15. Xu H, Sha MY, Wong EY, Uphoff J, Xu Y, Treadway JA, Truong A, O’Brien E, Asquith S, Stubbins M, Spurr NK, Lai EH, Mahoney W. Multiplexed SNP genotyping using the Qbead system: a quantum dot-encoded microsphere-based assay. Nucleic Acids Res 2003; 31: e43.