Electrophoretic detection of single-nucleotide polymorphisms

BioTechniques

Volumn 28, Issue 4, 2000, Pages 710-716

  See, Deven ^a   Kanazin, Vladimir ^a   Talbert, Hope ^a   Blake, Tom ^a  

^a MONTANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALLELE; ARTICLE; BARLEY; DNA POLYMORPHISM; ELECTROPHORESIS; GENE LOCUS; GENETIC LINKAGE; HETEROZYGOSITY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS;

HORDEUM VULGARE SUBSP. VULGARE;

EID: 0034093134     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/00284st07     Document Type: Article

References (17)

1. Blake, T.K., D. Kadyrzhanova, K.W. Shepherd, A.M.K.R. Islam, P.L. Langridge, C.L. McDonald, J. Erpelding and S. Larson. 1996. STS-PCR markers appropriate for wheat-barley introgression. Theor. Appl. Genet. 93:826-832.
2. Chen, X., P.-Y. Kwok. 1997. A template-directed dye-terminator incorporation (TDI) assay: a homogeneous DNA diagnostic method based on fluorencence resonance energy transfer. Nucleic Acids Res. 25:347-353.
3. Dellaporta, S.L., J. Wood and J.B. Hicks. 1998. A plant DNA minipreparation. Plant Molecular Biology Reporter 1:19-21.
4. Gilles, P.N., D.J. Wu, C.B. Foster, P.J. Dillon and S.J. Chanock. 1999. Single nucleotide polymorphic discrimination by an electronic dot blot assay on semiconductor microchips. Nat. Biotechnol. 17:365-370.
5. Haff, L.H. and I.P. Smirnov. 1997. Single nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry. Genome Res. 7:378-388.
6. Hayes, P.M., B.H. Liu, S.J. Knapp, F. Chen, B. Jones, T. Blake, J. Frankowiak, D. Rasmussen et al. 1994. Quantitative trait locus effects and environmental interaction in a sample of North American barley germplasm. Theor. Appl. Genet. 87:397-401.
7. Kleinhofs, A., A. Kilian, M.A. Saghai-Maroof, R.M. Biyashev, P. Hayes, F.Q. Chen, N. Lapitan, A. Fenwick et al. 1993. A molecular, isozyme and morphological map of the barley (Hordeum vulgare) Theor. Appl. Genet. 86:705-712.
8. Landegren, U., M. Nilsson and P.Y. Kwok. 1998. Reading bits of genetic information: methods for single-nucleotide polymorphism analysis. Genome Res. 8:769-776.
9. Larson, S., C. McDonald and T.K. Blake. 1996. Evaluation of barley chromosome 3 yield QTL in a backcross F2 populaation using PCR-STS markers. Theor. Appl. Genet. 93:618-625.
10. Liu, Q., E.C. Thorland, J.A. Heit and S.S. Sommer. 1997. An overlapping PCR for bidirectional PCR amplification of specific alleles: a rapid one-tube method for simultaneously differentiating homozygotes and heterozygotes. Genome Res. 7:389-398.
11. Maniatis, T., E.F. Fritsch and J. Sambrook. 1989. Molecular cloning. CSH Laboratory Press, Cold Spring Harbor, NY. 6:36-40.
12. Pastinen, T., J. Partanen and A.-C. Syvänen. 1996. Multiplex fluorescent solid phase minisequencing for efficient screening of DNA sequence variation. Clin. Chem. 42:1391-1397.
13. Shumaker, J.M, A. Metspalu and C.T. Caskey. 1996. Mutation detection by solid phase primer extension. Hum. Mutat. 7:346-354.
14. Syvänen, A.-C. 1999. From gels to chips: minisequencing primer extension for analysis of point mutations and single nucleotide polymorphisms. Hum. Mutat. 13:1-10.
15. Vos, P., R. Hogers, M. Blaeker, M. Reijans, T. Lee, M. Homes, A. Frijters, J. Pot et al. 1995. AFLP: a new technique for DNA finger-printing. Nucleic Acids Res. 23:4407-4414.
16. Wang, D.G., J.B. Fan, C.J. Siao, A. Berno, P. Young, R. Sapolsky, G. Ghandour, N. Perkins et al. 1998. A large-scale identification, mapping, and genotyping of single nucleotide polymorphisms in the human genome. Science 250:1077-1082.
17. Winzeler, E.A., D.R. Richards, A.R. Conway, A.R. Goldstein, A. L. Kalman, S. McCullough, M.J., McCusker, J.H., D.A. Stevens et al. 1998. A direct allelic variation scanning of the yeast genome. Science 281:1194-1197.