Gas phase dimerization of neuropeptide head activator analogs useful for the noncovalent constraint of peptides

Biopolymers - Peptide Science Section

Volumn 88, Issue 1, 2007, Pages 55-63

  Gururaja, Tarikere L ^a   Payan, Donald G ^a   Anderson, D C ^b  

^a RIGEL PHARMACEUTICALS INC   (United States)

^b UNIVERSITY OF OREGON   (United States)

Author keywords

Noncovalent peptide constraint; Peptide dimerization; Peptide libraries; Peptide mass sp

Indexed keywords

DIMER INTERFACES; NONCOVALENT PEPTIDE CONSTRAINTS; PEPTIDE DIMERIZATION; PEPTIDE LIBRARIES;

COMPUTERS; DIMERIZATION; DIMERS; INTERFACES (MATERIALS); MASS SPECTROMETRY; MOLECULAR DYNAMICS;

AMINO ACIDS;

ALANINE; AMINO ACID; GLUTAMYLPHENYLALANYLLEUCYLISOLEUCYLVALYLLYSYLSERINE; NEUROPEPTIDE; PEPTIDE LIBRARY; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CIRCULAR DICHROISM; DIMERIZATION; ELECTROSPRAY MASS SPECTROMETRY; PROTEIN STRUCTURE; PROTEIN SYNTHESIS;

AMINO ACID SEQUENCE; BIOPOLYMERS; CIRCULAR DICHROISM; DIMERIZATION; GASES; MODELS, MOLECULAR; NEUROPEPTIDES; OLIGOPEPTIDES; PEPTIDE FRAGMENTS; PEPTIDE LIBRARY; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; SOLUTIONS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; THERMODYNAMICS;

EID: 33847363958     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20626     Document Type: Article

References (42)

1. Meister, A. Trends Biochem Sci 1988, 13, 185-188.
2. Uhlig, S.; Wendel, A. Life Sci 1992, 51, 1083-1094.
3. Derman, A.; Prinz, W.; Belin, D.; Beckwith, J. Science 1993, 262, 1744-1747.
4. Lee, D.; Goldberg, A. Trends Cell Biol 1998, 8, 397-402.
5. Garzon-Rodriguez, W.; Sepulveda-Becerra, M.; Milton, S.; Glabe, C. J Biol Chem 1997, 272, 21037-21044.
6. Cowley, D.; Hoflack, J.; Pelton, J.; Saudek, V. Eur J Biochem 1992, 205, 1099-1106.
7. Chitta, R.; Rempel, D.; Gross, M. J Am Soc Mass Spectrom 2005, 16, 1031-1038.
8. Bodenmuller, H.; Schilling, E.; Zachmann, B.; Schaller, H. EMBO J 1986, 5, 1825-1829.
9. Lai, J.; Gellman, S. Protein Sci 2003, 12, 560-566.
10. Gururaja, T.; Narasimhamurthy, S.; Payan, D.; Anderson, D. Chem Biol 2000, 7, 515-527.
11. Fields, G.; Noble, R. Int J Pept Protein Res 1990, 35, 161-214.
12. Hudson, D. J Org Chem 1988, 53, 617-624.
13. King, D.; Fields, C.; Fields, G. Int J Pept Protein Res 1990, 36, 255-266.
14. Gururaja, T.; Levine, J.; Tran, D.; Naganagowda, G.; Ramalingam, K.; Ramasubbu, N.; Levine, M. Biochem Biophys Acta 1999, 1431, 107-119.
15. Bohm, G.; Muhr, R.; Jaenicke, R. Protein Eng 1992, 5, 191-195.
16. Tjernberg, A.; Carnoe, S.; Oliv, F.; Benkestock, K.; Edlund, P.; Griffiths, W.; Hallen, D. Anal Chem 2004, 76, 4325-4331.
17. Chitta, R.; Gross, M. L. Biophys J 2004, 86, 473-479.
18. Maple, J.; Hwang, M.; Stockfisch, T.; Dinur, U.; Waldman, M.; Ewig, C.; Hagler, A. J Comput Chem 1994, 15, 162-182.
19. Verlet, L. Phys Rev 1967, 159, 98-103.
20. Kitson, D.; Hagler, A. Biochemistry 1988, 27, 5246-5257.
21. Mackay, D.; Cross, A.; Hagler, A. In Prediction of Protein Structure and the Principles of Protein Conformation; Fasman, G., Ed.; Plenum: New York, 1989; pp 317-358.
22. O'Connor, S.; Smith, P.; Al-Obeidi, F.; Pettitt, B. J Med Chem 1992, 35, 2870-2881.
23. Martsev, S.; Vlasov, A.; Arosio, P. Protein Eng 1998, 11, 377-381.
24. Przybylski, M.; Glockner, M. Angew Chem Int Ed Engl 1996, 35, 807-826.
25. Loo, J. Mass Spectrom Rev 1997, 16, 1-23.
26. Di Tullio, A.; Reale, S.; De Angelis, F. J Mass Spectrom 2005, 40, 845-865.
27. Loo, J.; Holsworth, D.; Root-Bernstein, R. Biol Mass Spectrom 1994, 23, 6-12.
28. Li, Y.; Hsieh, Y.; Henion, J.; Senko, M.; McLafferty, F.; Ganem, B. J Am Chem Soc 1993, 115, 8409-8413.
29. Wendt, H.; Durr, E.; Thomas, R.; Przybylski, M.; Boshard H. Protein Sci 1995, 4, 1563-1570.
30. Witte, S.; Neumann, F.; Krawinkel, U.; Przybylski, M. J Biol Chem 1996, 271, 18171-18175.
31. Busman, M.; Knapp, D.; Schey, K. Rapid Commun Mass Spectrom 1994, 8, 211-216.
32. Smith, R.; Light-Wahl, K.; Winger, B.; Loo, J. Org Mass Spectrom 1992, 27, 811-821.
33. Greig, M.; Gaus, H.; Cummins, L.; Sasmor, H.; Griffey, R. J Am Chem Soc 1995, 117, 10765-10766.
34. Light-Wahl, K.; Schwartz, B.; Smith, R. J Am Chem Soc 1994, 116, 5271-5278.
35. Schwartz, B.; Gale, D.; Smith, R.; Chilkoti, A.; Stayton, P. J Mass Spectrom 1995, 30, 1095-1102.
36. Smith, V.; Schwartz, B.; Randall, L.; Smith, R. Protein Sci 1996, 5, 488-494.
37. Juwadim, P.; Vunnam, S.; Yoo, B.; Merrifield, R. J. Pept Res 1999, 53, 244-251.
38. Guichard, G.; Benkirane, N.; Zeder-Lutz, G.; van Regenmortel, M.; Briand, J.; Muller, S. Proc Natl Acad Sci USA 1994, 91, 9765-9769.
39. Bonora, G.; Toniolo, C.; Freer, R.; Becker, E. Biochim Biophys Acta 1986, 884, 545-549.
40. Nakagawa, S.; Yang, F.; Kato, T.; Flouret, G.; Hechter, O. Int J Pept Protein Res 1976, 8, 465-479.
41. Loo, J.; Hu, P.; McConnell, P.; Mueller, W.; Sawyer, T.; Thanabal, V. J Am Soc Mass Spectrom 1997, 8, 234-243.
42. McLafferty, F.; Guan, Z.; Haupts, U.; Wood, T.; Kelleher, N. J Am Chem Soc 1998, 120, 4732-4740.