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Volumn 7, Issue , 2007, Pages

Conservation of the TRAPPII-specific subunits of a Ypt/Rab exchanger complex

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN; PROTEIN SUBUNIT; RAB PROTEIN; REV PROTEIN; TRAPPII PROTEIN; UNCLASSIFIED DRUG; SACCHAROMYCES CEREVISIAE PROTEIN; TRANSPORT PROTEIN PARTICLE, TRAPP; VESICULAR TRANSPORT PROTEIN; YPT1 PROTEIN, S CEREVISIAE;

EID: 33847208186     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-12     Document Type: Article
Times cited : (28)

References (52)
  • 1
    • 0035865345 scopus 로고    scopus 로고
    • A genomic perspective on membrane compartment organization
    • 10.1038/35057024. 11237004
    • A genomic perspective on membrane compartment organization. JB Bock HT Matern AA Peden RH Scheller, Nature 2001 409 6822 839 841 10.1038/35057024 11237004
    • (2001) Nature , vol.409 , Issue.6822 , pp. 839-841
    • Bock, J.B.1    Matern, H.T.2    Peden, A.A.3    Scheller, R.H.4
  • 2
    • 18144380651 scopus 로고    scopus 로고
    • Structural clues to Rab GTPase functional diversity
    • 10.1074/jbc.R500003200. 15746102
    • Structural clues to Rab GTPase functional diversity. SR Pfeffer, J Biol Chem 2005 280 16 15485 15488 10.1074/jbc.R500003200 15746102
    • (2005) J Biol Chem , vol.280 , Issue.16 , pp. 15485-15488
    • Pfeffer, S.R.1
  • 3
    • 0035909125 scopus 로고    scopus 로고
    • Ypt/rab gtpases: Regulators of protein trafficking
    • 11579231
    • Ypt/rab gtpases: regulators of protein trafficking. N Segev, Sci STKE 2001 2001 100 RE11 11579231
    • (2001) Sci STKE , vol.2001 , Issue.100 , pp. 11
    • Segev, N.1
  • 4
    • 0035257013 scopus 로고    scopus 로고
    • Rab proteins as membrane organizers
    • 10.1038/35052055. 11252952
    • Rab proteins as membrane organizers. M Zerial H McBride, Nat Rev Mol Cell Biol 2001 2 2 107 117 10.1038/35052055 11252952
    • (2001) Nat Rev Mol Cell Biol , vol.2 , Issue.2 , pp. 107-117
    • Zerial, M.1    McBride, H.2
  • 6
    • 16644370412 scopus 로고    scopus 로고
    • Human RAS superfamily proteins and related GTPases
    • 10.1126/stke.2502004re13. 15367757
    • Human RAS superfamily proteins and related GTPases. J Colicelli, Sci STKE 2004 2004 250 RE13 10.1126/stke.2502004re13 15367757
    • (2004) Sci STKE , vol.2004 , Issue.250 , pp. 13
    • Colicelli, J.1
  • 7
    • 0034714098 scopus 로고    scopus 로고
    • The mammalian Rab family of small GTPases: Definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily
    • 10.1006/jmbi.2000.4010. 10966806
    • The mammalian Rab family of small GTPases: definition of family and subfamily sequence motifs suggests a mechanism for functional specificity in the Ras superfamily. JB Pereira-Leal MC Seabra, J Mol Biol 2000 301 4 1077 1087 10.1006/jmbi.2000.4010 10966806
    • (2000) J Mol Biol , vol.301 , Issue.4 , pp. 1077-1087
    • Pereira-Leal, J.B.1    Seabra, M.C.2
  • 8
    • 0028820010 scopus 로고
    • The Ypt1 GTPase is essential for the first two steps of the yeast secretory pathway
    • 10.1083/jcb.131.3.583. 7593181
    • The Ypt1 GTPase is essential for the first two steps of the yeast secretory pathway. G Jedd C Richardson R Litt N Segev, J Cell Biol 1995 131 3 583 590 10.1083/jcb.131.3.583 7593181
    • (1995) J Cell Biol , vol.131 , Issue.3 , pp. 583-590
    • Jedd, G.1    Richardson, C.2    Litt, R.3    Segev, N.4
  • 9
    • 0030969912 scopus 로고    scopus 로고
    • Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment
    • 10.1083/jcb.137.3.563. 9151665
    • Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment. G Jedd J Mulholland N Segev, J Cell Biol 1997 137 3 563 580 10.1083/jcb.137.3.563 9151665
    • (1997) J Cell Biol , vol.137 , Issue.3 , pp. 563-580
    • Jedd, G.1    Mulholland, J.2    Segev, N.3
  • 10
    • 0024394003 scopus 로고
    • The ras-related mouse ypt1 protein can functionally replace the YPT1 gene product in yeast
    • 2670553
    • The ras-related mouse ypt1 protein can functionally replace the YPT1 gene product in yeast. H Haubruck R Prange C Vorgias D Gallwitz, Embo J 1989 8 5 1427 1432 2670553
    • (1989) Embo J , vol.8 , Issue.5 , pp. 1427-1432
    • Haubruck, H.1    Prange, R.2    Vorgias, C.3    Gallwitz, D.4
  • 11
    • 0034638828 scopus 로고    scopus 로고
    • Rab11 regulates the compartmentalization of early endosomes required for efficient transport from early endosomes to the trans-golgi network
    • 10.1083/jcb.151.6.1207. 11121436
    • Rab11 regulates the compartmentalization of early endosomes required for efficient transport from early endosomes to the trans-golgi network. M Wilcke L Johannes T Galli V Mayau B Goud J Salamero, J Cell Biol 2000 151 6 1207 1220 10.1083/jcb.151.6.1207 11121436
    • (2000) J Cell Biol , vol.151 , Issue.6 , pp. 1207-1220
    • Wilcke, M.1    Johannes, L.2    Galli, T.3    Mayau, V.4    Goud, B.5    Salamero, J.6
  • 12
    • 0031768460 scopus 로고    scopus 로고
    • Rab11 is required for trans-golgi network-to-plasma membrane transport and a preferential target for GDP dissociation inhibitor
    • 9802909
    • Rab11 is required for trans-golgi network-to-plasma membrane transport and a preferential target for GDP dissociation inhibitor. W Chen Y Feng D Chen A Wandinger-Ness, Mol Biol Cell 1998 9 11 3241 3257 9802909
    • (1998) Mol Biol Cell , vol.9 , Issue.11 , pp. 3241-3257
    • Chen, W.1    Feng, Y.2    Chen, D.3    Wandinger-Ness, A.4
  • 13
    • 0034676094 scopus 로고    scopus 로고
    • TRAPP stimulates guanine nucleotide exchange on Ypt1p
    • 10.1083/jcb.151.2.289. 11038176
    • TRAPP stimulates guanine nucleotide exchange on Ypt1p. W Wang M Sacher S Ferro-Novick, J Cell Biol 2000 151 2 289 296 10.1083/jcb.151.2.289 11038176
    • (2000) J Cell Biol , vol.151 , Issue.2 , pp. 289-296
    • Wang, W.1    Sacher, M.2    Ferro-Novick, S.3
  • 14
    • 0033638091 scopus 로고    scopus 로고
    • The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32
    • 11102533
    • The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32. S Jones C Newman F Liu N Segev, Mol Biol Cell 2000 11 12 4403 4411 11102533
    • (2000) Mol Biol Cell , vol.11 , Issue.12 , pp. 4403-4411
    • Jones, S.1    Newman, C.2    Liu, F.3    Segev, N.4
  • 15
    • 0035102194 scopus 로고    scopus 로고
    • TRAPP I implicated in the specificity of tethering in ER-to-Golgi transport
    • 10.1016/S1097-2765(01)00190-3. 11239471
    • TRAPP I implicated in the specificity of tethering in ER-to-Golgi transport. M Sacher J Barrowman W Wang J Horecka Y Zhang M Pypaert S Ferro-Novick, Mol Cell 2001 7 2 433 442 10.1016/S1097-2765(01)00190-3 11239471
    • (2001) Mol Cell , vol.7 , Issue.2 , pp. 433-442
    • Sacher, M.1    Barrowman, J.2    Wang, W.3    Horecka, J.4    Zhang, Y.5    Pypaert, M.6    Ferro-Novick, S.7
  • 17
    • 33750799403 scopus 로고    scopus 로고
    • The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering
    • 10.1016/j.cell.2006.09.029. 17110339
    • The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering. YG Kim S Raunser C Munger J Wagner YL Song M Cygler T Walz BH Oh M Sacher, Cell 2006 127 4 817 830 10.1016/j.cell.2006.09.029 17110339
    • (2006) Cell , vol.127 , Issue.4 , pp. 817-830
    • Kim, Y.G.1    Raunser, S.2    Munger, C.3    Wagner, J.4    Song, Y.L.5    Cygler, M.6    Walz, T.7    Oh, B.H.8    Sacher, M.9
  • 18
    • 28544431984 scopus 로고    scopus 로고
    • Mutants in trs120 disrupt traffic from the early endosome to the late Golgi
    • 10.1083/jcb.200505145. 16314430
    • Mutants in trs120 disrupt traffic from the early endosome to the late Golgi. H Cai Y Zhang M Pypaert L Walker S Ferro-Novick, J Cell Biol 2005 171 5 823 833 10.1083/jcb.200505145 16314430
    • (2005) J Cell Biol , vol.171 , Issue.5 , pp. 823-833
    • Cai, H.1    Zhang, Y.2    Pypaert, M.3    Walker, L.4    Ferro-Novick, S.5
  • 19
    • 17244375812 scopus 로고    scopus 로고
    • Mammalian Bet3 functions as a cytosolic factor participating in transport from the ER to the Golgi apparatus
    • 10.1242/jcs.01723. 15728249
    • Mammalian Bet3 functions as a cytosolic factor participating in transport from the ER to the Golgi apparatus. E Loh F Peter VN Subramaniam W Hong, J Cell Sci 2005 118 Pt 6 1209 1222 10.1242/jcs.01723 15728249
    • (2005) J Cell Sci , vol.118 , Issue.PART 6 , pp. 1209-1222
    • Loh, E.1    Peter, F.2    Subramaniam, V.N.3    Hong, W.4
  • 23
    • 0031560924 scopus 로고    scopus 로고
    • Genomic organization and complete nucleotide sequence of the TMEM1 gene on human chromosome 21q22.3
    • 10.1006/bbrc.1997.6758. 9196060
    • Genomic organization and complete nucleotide sequence of the TMEM1 gene on human chromosome 21q22.3. K Nagamine J Kudoh K Kawasaki S Minoshima S Asakawa F Ito N Shimizu, Biochem Biophys Res Commun 1997 235 1 185 190 10.1006/bbrc.1997.6758 9196060
    • (1997) Biochem Biophys Res Commun , vol.235 , Issue.1 , pp. 185-190
    • Nagamine, K.1    Kudoh, J.2    Kawasaki, K.3    Minoshima, S.4    Asakawa, S.5    Ito, F.6    Shimizu, N.7
  • 26
    • 12844258045 scopus 로고    scopus 로고
    • Synthetic genetic array analysis of the PtdIns 4-kinase Pik1p identifies components in a Golgi-specific Ypt31/rab-GTPase signaling pathway
    • 15574876. 10.1091/mbc.E04-08-0700
    • Synthetic genetic array analysis of the PtdIns 4-kinase Pik1p identifies components in a Golgi-specific Ypt31/rab-GTPase signaling pathway. VA Sciorra A Audhya AB Parsons N Segev C Boone SD Emr, Mol Biol Cell 2005 16 2 776 793 15574876 10.1091/mbc.E04-08-0700
    • (2005) Mol Biol Cell , vol.16 , Issue.2 , pp. 776-793
    • Sciorra, V.A.1    Audhya, A.2    Parsons, A.B.3    Segev, N.4    Boone, C.5    Emr, S.D.6
  • 27
    • 0027407566 scopus 로고
    • A mutational analysis of killer toxin resistance in Saccharomyces cerevisiae identifies new genes involved in cell wall (1 - >6)-beta-glucan synthesis
    • 8462845
    • A mutational analysis of killer toxin resistance in Saccharomyces cerevisiae identifies new genes involved in cell wall (1 - >6)-beta-glucan synthesis. JL Brown Z Kossaczka B Jiang H Bussey, Genetics 1993 133 4 837 849 8462845
    • (1993) Genetics , vol.133 , Issue.4 , pp. 837-849
    • Brown, J.L.1    Kossaczka, Z.2    Jiang, B.3    Bussey, H.4
  • 29
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • 10.1093/bioinformatics/bti125. 15531603
    • Protein homology detection by HMM-HMM comparison. J Soding, Bioinformatics 2005 21 7 951 960 10.1093/bioinformatics/bti125 15531603
    • (2005) Bioinformatics , vol.21 , Issue.7 , pp. 951-960
    • Soding, J.1
  • 31
    • 0032568655 scopus 로고    scopus 로고
    • SMART, a simple modular architecture research tool: Identification of signaling domains
    • 9600884. 10.1073/pnas.95.11.5857
    • SMART, a simple modular architecture research tool: identification of signaling domains. J Schultz F Milpetz P Bork CP Ponting, Proc Natl Acad Sci U S A 1998 95 11 5857 5864 9600884 10.1073/pnas.95.11.5857
    • (1998) Proc Natl Acad Sci U S a , vol.95 , Issue.11 , pp. 5857-5864
    • Schultz, J.1    Milpetz, F.2    Bork, P.3    Ponting, C.P.4
  • 32
    • 0031667187 scopus 로고    scopus 로고
    • Identification of regulators for Ypt1 GTPase nucleotide cycling
    • 9763446
    • Identification of regulators for Ypt1 GTPase nucleotide cycling. S Jones CJ Richardson RJ Litt N Segev, Mol Biol Cell 1998 9 10 2819 2837 9763446
    • (1998) Mol Biol Cell , vol.9 , Issue.10 , pp. 2819-2837
    • Jones, S.1    Richardson, C.J.2    Litt, R.J.3    Segev, N.4
  • 33
    • 0033622037 scopus 로고    scopus 로고
    • Identification and characterization of five new subunits of TRAPP
    • 10.1078/S0171-9335(04)70009-6. 10727015
    • Identification and characterization of five new subunits of TRAPP. M Sacher J Barrowman D Schieltz JR Yates 3rd S Ferro-Novick, Eur J Cell Biol 2000 79 2 71 80 10.1078/S0171-9335(04)70009-6 10727015
    • (2000) Eur J Cell Biol , vol.79 , Issue.2 , pp. 71-80
    • Sacher, M.1    Barrowman, J.2    Schieltz, D.3    Yates III, J.R.4    Ferro-Novick, S.5
  • 35
    • 0035999985 scopus 로고    scopus 로고
    • Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces
    • 10.1093/bioinformatics/18.4.608. 12016058
    • Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces. S Mitaku T Hirokawa T Tsuji, Bioinformatics 2002 18 4 608 616 10.1093/bioinformatics/18. 4.608 12016058
    • (2002) Bioinformatics , vol.18 , Issue.4 , pp. 608-616
    • Mitaku, S.1    Hirokawa, T.2    Tsuji, T.3
  • 36
    • 0036132818 scopus 로고    scopus 로고
    • Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally- characterized transmembrane topologies
    • 11808871
    • Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally- characterized transmembrane topologies. M Ikeda M Arai DM Lao T Shimizu, In Silico Biol 2002 2 1 19 33 11808871
    • (2002) In Silico Biol , vol.2 , Issue.1 , pp. 19-33
    • Ikeda, M.1    Arai, M.2    Lao, D.M.3    Shimizu, T.4
  • 37
    • 0035425411 scopus 로고    scopus 로고
    • Ypt and Rab GTPases: Insight into functions through novel interactions
    • 10.1016/S0955-0674(00)00242-8. 11454458
    • Ypt and Rab GTPases: insight into functions through novel interactions. N Segev, Curr Opin Cell Biol 2001 13 4 500 511 10.1016/S0955-0674(00)00242-8 11454458
    • (2001) Curr Opin Cell Biol , vol.13 , Issue.4 , pp. 500-511
    • Segev, N.1
  • 40
    • 0028787577 scopus 로고
    • Physical mapping of the holoprosencephaly critical region in 21q22.3, exclusion of SIM2 as a candidate gene for holoprosencephaly, and mapping of SIM2 to a region of chromosome 21 important for Down syndrome
    • 7485157
    • Physical mapping of the holoprosencephaly critical region in 21q22.3, exclusion of SIM2 as a candidate gene for holoprosencephaly, and mapping of SIM2 to a region of chromosome 21 important for Down syndrome. M Muenke LJ Bone HF Mitchell I Hart K Walton K Hall-Johnson EF Ippel J Dietz-Band K Kvaloy CM Fan, Am J Hum Genet 1995 57 5 1074 1079 7485157
    • (1995) Am J Hum Genet , vol.57 , Issue.5 , pp. 1074-1079
    • Muenke, M.1    Bone, L.J.2    Mitchell, H.F.3    Hart, I.4    Walton, K.5    Hall-Johnson, K.6    Ippel, E.F.7    Dietz-Band, J.8    Kvaloy, K.9    Fan, C.M.10
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417. 10.1093/nar/22.22.4673
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson DG Higgins TJ Gibson, Nucleic Acids Res 1994 22 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online - A web server for fast maximum likelihood-based phylogenetic inference
    • 15980534. 10.1093/nar/gki352
    • PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. S Guindon F Lethiec P Duroux O Gascuel, Nucleic Acids Res 2005 33 Web Server issue W557 9 15980534 10.1093/nar/gki352
    • (2005) Nucleic Acids Res , vol.33 , Issue.WEB SERVER ISSUE , pp. 557-9
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 45
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • 8902363
    • TreeView: an application to display phylogenetic trees on personal computers. RD Page, Comput Appl Biosci 1996 12 4 357 358 8902363
    • (1996) Comput Appl Biosci , vol.12 , Issue.4 , pp. 357-358
    • Page, R.D.1
  • 46
    • 0028840671 scopus 로고
    • The Golgi-localization of yeast Emp47p depends on its di-lysine motif but is not affected by the ret1-1 mutation in alpha-COP
    • 10.1083/jcb.131.4.895. 7490292
    • The Golgi-localization of yeast Emp47p depends on its di-lysine motif but is not affected by the ret1-1 mutation in alpha-COP. S Schroder F Schimmoller B Singer-Kruger H Riezman, J Cell Biol 1995 131 4 895 912 10.1083/jcb.131.4.895 7490292
    • (1995) J Cell Biol , vol.131 , Issue.4 , pp. 895-912
    • Schroder, S.1    Schimmoller, F.2    Singer-Kruger, B.3    Riezman, H.4
  • 48
    • 11144333620 scopus 로고    scopus 로고
    • Ypt31/32 GTPases and their novel F-box effector protein Rcy1 regulate protein recycling
    • 15537705. 10.1091/mbc.E04-03-0258
    • Ypt31/32 GTPases and their novel F-box effector protein Rcy1 regulate protein recycling. SH Chen S Chen AA Tokarev F Liu G Jedd N Segev, Mol Biol Cell 2005 16 1 178 192 15537705 10.1091/mbc.E04-03-0258
    • (2005) Mol Biol Cell , vol.16 , Issue.1 , pp. 178-192
    • Chen, S.H.1    Chen, S.2    Tokarev, A.A.3    Liu, F.4    Jedd, G.5    Segev, N.6
  • 49
    • 0030908449 scopus 로고    scopus 로고
    • The yeast VPS5/GRD2 gene encodes a sorting nexin-1-like protein required for localizing membrane proteins to the late Golgi
    • 9175702
    • The yeast VPS5/GRD2 gene encodes a sorting nexin-1-like protein required for localizing membrane proteins to the late Golgi. SF Nothwehr AE Hindes, J Cell Sci 1997 110 ( Pt 9) 1063 1072 9175702
    • (1997) J Cell Sci , vol.1109 , pp. 1063-1072
    • Nothwehr, S.F.1    Hindes, A.E.2
  • 51
    • 0027412196 scopus 로고
    • ALSCRIPT: A tool to format multiple sequence alignments
    • 10.1093/protein/6.1.37. 8433969
    • ALSCRIPT: a tool to format multiple sequence alignments. GJ Barton, Protein Eng 1993 6 1 37 40 10.1093/protein/6.1.37 8433969
    • (1993) Protein Eng , vol.6 , Issue.1 , pp. 37-40
    • Barton, G.J.1
  • 52
    • 26844574974 scopus 로고    scopus 로고
    • The structure of the TRAPP subunit TPC6 suggests a model for a TRAPP subcomplex
    • 16025134. 10.1038/sj.embor.7400463
    • The structure of the TRAPP subunit TPC6 suggests a model for a TRAPP subcomplex. D Kummel JJ Muller Y Roske R Misselwitz K Bussow U Heinemann, EMBO Rep 2005 6 8 787 793 16025134 10.1038/sj.embor.7400463
    • (2005) EMBO Rep , vol.6 , Issue.8 , pp. 787-793
    • Kummel, D.1    Muller, J.J.2    Roske, Y.3    Misselwitz, R.4    Bussow, K.5    Heinemann, U.6


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