Intra- and interindividual variation in gene expression in human adipose tissue

Pflugers Archiv European Journal of Physiology

Volumn 453, Issue 6, 2007, Pages 851-861

  Van Beek, Esther A ^a   Bakker, Arjen H ^b   Kruyt, Philip M ^c   Hofker, Marten H ^b   Saris, Wim H ^b   Keijer, Jaap ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b MAASTRICHT UNIVERSITY   (Netherlands)

^c GELDERSE VALLEI HOSPITAL   (Netherlands)

Author keywords

Adipose depot; CD36; FABP4; FHL1; MGP; Microarray; Omental; Subcutaneous; VIM

Indexed keywords

CD36 ANTIGEN; COMPLEMENTARY DNA; FATTY ACID BINDING PROTEIN; FATTY ACID BINDING PROTEIN 4; LIM PROTEIN; MATRIX PROTEIN; OSTEOCALCIN; UNCLASSIFIED DRUG; VIMENTIN;

ADIPOCYTE; ADIPOSE TISSUE; ADULT; AGED; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; FEMALE; GENE EXPRESSION; HUMAN; HUMAN TISSUE; LEAN BODY WEIGHT; MALE; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; OBESITY; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SAMPLE; VARIANCE;

ANTIGENS, CD36; CALCIUM-BINDING PROTEINS; EXTRACELLULAR MATRIX PROTEINS; FATTY ACID-BINDING PROTEINS; FEMALE; GENE EXPRESSION PROFILING; HUMANS; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MALE; MIDDLE AGED; MUSCLE PROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OMENTUM; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SUBCUTANEOUS FAT; VARIATION (GENETICS); VIMENTIN;

EID: 33847101355     PISSN: 00316768     EISSN: 14322013     Source Type: Journal    
DOI: 10.1007/s00424-006-0164-4     Document Type: Article

References (64)

1. Abderrahim-Ferkoune A, Bezy O, Astri-Roques S, Elabd C, Ailhaud G, Amri EZ (2004) Transdifferentiation of preadipose cells into smooth muscle-like cells: role of aortic carboxypeptidase-like protein. Exp Cell Res 293:219-228
2. Arvidsson E, Blomqvist L, Ryden M (2004) Depot-specific differences in perilipin mRNA but not protein expression in obesity. J Intern Med 255:595-601
3. Asch AS, Barnwell J, Silverstein RL, Nachman RL (1987) Isolation of the thrombospondin membrane receptor. J Clin Invest 79:1054-1061
4. Bach I (2000) The LIM domain: regulation by association. Mech Dev 91:5-17
5. Berndt J, Kloting N, Kralisch S, Kovacs P, Fasshauer M, Schon MR, Stumvoll M, Bluher M (2005) Plasma visfatin concentrations and fat depot-specific mRNA expression in humans. Diabetes 54:2911-2916
6. Bjorntorp P (1993) Regional obesity and NIDDM. Adv Exp Med Biol 334:279-285
7. Blanchette-Mackie EJ, Dwyer NK, Barber T, Coxey RA, Takeda T, Rondinone CM, Theodorakis JL, Greenberg AS, Londos C (1995) Perilipin is located on the surface layer of intracellular lipid droplets in adipocytes. J Lipid Res 36:1211-1226
8. Boeuf S, Klingenspor M, Van Hal NLW, Schneider T, Keijer J, KLaus S (2001) Differential gene expression in white and brown preadipocytes. Physiol Genomics 7:15-25
9. Bonafoux B, Lejeune M, Piquemal D, Quere R, Baudet A, Assaf L, Marti J, Aguilar-Martinez P, Commes T (2004) Analysis of remnant reticulocyte mRNA reveals new genes and antisense transcripts expressed in the human erythroid lineage. Haematologica 89:1434-1438
10. Borsook H, Lingrel JB, Scaro JL, Millette RL (1962) Synthesis of haemoglobin in relation to the maturation of erythroid cells. Nature 196:347-350
11. Bouchard C, Tremblay A, Despres JP, Nadeau A, Lupien PJ, Theriault G, Dussault J, Moorjani S, Pinault S, Fournier G (1990) The response to long-term overfeeding in identical twins. N Engl J Med 322:1477-1482
12. Cinti S (2002) Adipocyte differentiation and transdifferentiation: plasticity of the adipose organ. J Endocrinol Investig 25:823-835
13. Cinti S (2005) The adipose organ. Prostaglandins Leukot Essent Fat Acids 73:9-15
14. Dusserre E, Moulin P, Vidal H (2000) Differences in mRNA expression of the proteins secreted by the adipocytes in human subcutaneous and visceral adipose tissues. Biochim Biophys Acta 1500:88-96
15. Dydensborg AB, Herring E, Auclair J, Tremblay E, Beaulieu JF (2006) Normalizing genes for quantitative RT-PCR in differentiating human intestinal epithelial cells and adenocarcinomas of the colon. Am J Physiol Gastrointest Liver Physiol 290:G1067-G1074
16. Franke WW, Hergt M, Grund C (1987) Rearrangement of the vimentin cytoskeleton during adipose conversion: formation of an intermediate filament cage around lipid globules. Cell 49:131-141
17. Fu L, Liang JJ (2003) Alteration of protein-protein interactions of congenital cataract crystallin mutants. Investig Ophthalmol Vis Sci 44:1155-1159
18. Gabrielsson BG, Johansson JM, Lonn M, Jernas M, Olbers T, Peltonen M, Larsson I, Lonn L, Sjostrom L, Carlsson B, Carlsson LM (2003) High expression of complement components in omental adipose tissue in obese men. Obes Res 11:699-708
19. Garcia Palacios V, Morita I, Murota S (2001) Expression of adipogenesis markers in a murine stromal cell line treated with 15-deoxy delta(12,14)- prostaglandin J2, interleukin-11, 9-cis retinoic acid and vitamin K2. Prostaglandins Leukot Essent Fat Acids 65:215-221
20. Gomez-Ambrosi J, Catalan V, Diez-Caballero A, Martinez-Cruz LA, Gil MJ, Garcia-Foncillas J, Cienfuegos JA, Salvador J, Mato JM, Fruhbeck G (2004) Gene expression profile of omental adipose tissue in human obesity. Faseb J 18:215-217
21. Gopal-Srivastava R, Cvekl A, Piatigorsky J (1998) Involvement of retinoic acid/retinoid receptors in the regulation of murine alphaB-crystallin/small heat shock protein gene expression in the lens. J Biol Chem 273:17954-17961
22. Grundmann U, Abel KJ, Bohn H, Lobermann H, Lottspeich F, Kupper H (1988) Characterization of cDNA encoding human placental anticoagulant protein (PP4): homology with the lipocortin family. Proc Natl Acad Sci USA 85:3708-3712
23. Hotta K, Gustafson TA, Ortmeyer HK, Bodkin NL, Nicolson MA, Hansen BC (1996) Regulation of obese (ob) mRNA and plasma leptin levels in rhesus monkeys. Effects of insulin, body weight, and non-insulin-dependent diabetes mellitus. J Biol Chem 271:25327-25331
24. Hube F, Lietz U, Igel M, Jensen PB, Tornqvist H, Joost HG, Hauner H (1996) Difference in leptin mRNA levels between omental and subcutaneous abdominal adipose tissue from obese humans. Horm Metab Res 28:690-693
25. Hunt CR, Ro JH, Dobson DE, Min HY, Spiegelman BM (1986) Adipocyte P2 gene: developmental expression and homology of 5′-flanking sequences among fat cell-specific genes. Proc Natl Acad Sci USA 83:3786-3790
26. Inuzuka H, Nanbu-Wakao R, Masuho Y, Muramatsu M, Tojo H, Wakao H (1999) Differential regulation of immediate early gene expression in preadipocyte cells through multiple signaling pathways. Biochem Biophys Res Commun 265:664-668
27. Iwamoto M, Shapiro IM, Yagami K, Boskey AL, Leboy PS, Adams SL, Pacifici M (1993) Retinoic acid induces rapid mineralization and expression of mineralization-related genes in chondrocytes. Exp Cell Res 207:413-420
28. Jakel S, Gorlich D (1998) Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells. EMBO J 17:4491-4502
29. Jonk LJ, de Jonge ME, Vervaart JM, Wissink S, Kruijer W (1994) Isolation and developmental expression of retinoic-acid-induced genes. Dev Biol 161:604-614
30. Keller C, Keller P, Marshal S, Pedersen BK (2003) IL-6 gene expression in human adipose tissue in response to exercise-effect of carbohydrate ingestion. J Physiol 550:927-931
31. Kirfel J, Kelter M, Cancela LM, Price PA, Schule R (1997) Identification of a novel negative retinoic acid responsive element in the promoter of the human matrix Gla protein gene. Proc Natl Acad Sci USA 94:2227-2232
32. Kissebah A, Vydelingum N, Murray R, Evans D, Hartz A, Kalkhoff R, Adams P (1982) Relation of body fat distribution to metabolic complications of obesity. J Clin Endocrinol Metab 54:254-260
33. Kojima S, Hayashi S, Shimokado K, Suzuki Y, Shimada J, Crippa MP, Friedman SL (2000) Transcriptional activation of urokinase by the Kruppel-like factor Zf9/COPEB activates latent TGF-beta 1 in vascular endothelial cells. Blood 95:1309-1316
34. Komatsubara I, Murakami T, Kusachi S, Nakamura K, Hirohata S, Hayashi J, Takemoto S, Suezawa C, Ninomiya Y, Shiratori Y (2003) Spatially and temporally different expression of osteonectin and osteopontin in the infarct zone of experimentally induced myocardial infarction in rats. Cardiovasc Pathol 12:186-194
35. Koyama Y, Katagiri S, Hanai S, Uchida K, Miwa M (1999) Poly (ADP-ribose) polymerase interacts with novel Drosophila ribosomal proteins, L22 and l23a, with unique histone-like aminoterminal extensions. Gene 226:339-345
36. Kubota T, Morozumi T, Shimizu K, Sugita N, Kobayashi T, Yoshie H (2001) Differential gene expression in neutrophils from patients with generalized aggressive periodontitis. J Periodontal Res 36:390-397
37. Kuniyasu A, Hayashi S, Nakayama H (2002) Adipocytes recognize and degrade oxidized low density lipoprotein through CD36. Biochem Biophys Res Commun 295:319-323
38. Lamounier-Zepter V, Ehrhart-Bornstein M (2006) Fat tissue metabolism and adrenal steroid secretion. Curr Hypertens Rep 8:30-34
39. Lefebvre AM, Laville M, Vega N, Riou JP, van Gaal L, Auwerx J, Vidal H (1998) Depot-specific differences in adipose tissue gene expression in lean and obese subjects. Diabetes 47:98-103
40. Linder K, Arner P, Flores-Morales A, Tollet-Egnell P, Norstedt G (2004) Differentially expressed genes in visceral or subcutaneous adipose tissue of obese men and women. J Lipid Res 45:148-154
41. Luo G, Ducy P, McKee MD, Pinero GJ, Loyer E, Behringer RR, Karsenty G (1997) Spontaneous calcification of arteries and cartilage in mice lacking matrix GLA protein. Nature 386:78-81
42. Mok SC, Wong KK, Chan RK, Lau CC, Tsao SW, Knapp RC, Berkowitz RS (1994) Molecular cloning of differentially expressed genes in human epithelial ovarian cancer. Gynecol Oncol 52:247-252
43. Montague C, Prins J, Sanders L, Zhang J, Sewter C, Digby J, Byrne C, O'Rahilly S (1998) Depot-related gene expression in human subcutaneous and omental adipocytes. Diabetes 47:1384-1391
44. Morroni M, Giordano A, Zingaretti MC, Boiani R, De Matteis R, Kahn BB, Nisoli E, Tonello C, Pisoschi C, Luchetti MM, Marelli M, Cinti S (2004) Reversible transdifferentiation of secretory epithelial cells into adipocytes in the mammary gland. Proc Natl Acad Sci USA 101:16801-16806
45. Pellis L, Franssen-Van Hal NL, Burema J, Keijer J (2003) The Intraclass Correlation Coefficient applied for evaluation of data correction, labeling methods and rectal biopsy sampling in DNA microarray experiments. Physiol Genomics 21:21
46. Ramis JM, Franssen-van Hal NL, Kramer E, Llado I, Bouillaud F, Palou A, Keijer J (2002) Carboxypeptidase E and thrombospondin-1 are differently expressed in subcutaneous and visceral fat of obese subjects. Cell Mol Life Sci 59:1960-1971
47. Rice JS, Williamson MK, Price PA (1994) Isolation and sequence of the vitamin K-dependent matrix Gla protein from the calcified cartilage of the soupfin shark. J Bone Miner Res 9:567-576
48. Ruderman N, Chisholm D, Pi-Sunyer X, Schneider S (1998) The metabolically obese, normal-weight individual revisited. Diabetes 47:699-713
49. Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW (1996) Parallel human genome analysis: microarray-based expression monitoring of 1,000 genes. Proc Natl Acad Sci USA 93:10614-10619
50. Schoof E, Stuppy A, Harig F, Carbon R, Horbach T, Stohr W, Rascher W, Dotsch J (2004) Comparison of leptin gene expression in different adipose tissues in children and adults. Eur J Endocrinol 150:579-584
51. Smith KM, Lawn RM, Wilcox JN (1990) Cellular localization of apolipoprotein D and lecithin:cholesterol acyltransferase mRNA in rhesus monkey tissues by in situ hybridization. J Lipid Res 31:995-1004
52. Takahashi M, Nagaretani H, Funahashi T, Nishizawa H, Maeda N, Kishida K, Kuriyama H, Shimomura I, Maeda K, Hotta K, Ouchi N, Kihara S, Nakamura T, Yamashita S, Matsuzawa Y (2001) The expression of SPARC in adipose tissue and its increased plasma concentration in patients with coronary artery disease. Obes Res 9:388-393
53. Trayhurn P, Beattie JH (2001) Physiological role of adipose tissue: white adipose tissue as an endocrine and secretory organ. Proc Nutr Soc 60:329-339
54. Trayhurn P, Wood IS (2004) Adipokines: inflammation and the pleiotropic role of white adipose tissue. Br J Nutr 92:347-355
55. van der Meer-van Kraaij C, Kramer E, Jonker-Termont D, Katan MB, van der Meer R, Keijer J (2005) Differential gene expression in rat colon by dietary heme and calcium. Carcinogenesis 26:73-79
56. Viguerie N, Poitou C, Cancello R, Stich V, Clement K, Langin D (2005) Transcriptomics applied to obesity and caloric restriction. Biochimie 87:117-123
57. Vohl MC, Sladek R, Robitaille J, Gurd S, Marceau P, Richard D, Hudson TJ, Tchernof A (2004) A survey of genes differentially expressed in subcutaneous and visceral adipose tissue in men. Obes Res 12:1217-1222
58. Wang SM, Fong TH, Hsu SY, Chien CL, Wu JC (1997) Reorganization of a novel vimentin-associated protein in 3T3-L1 cells during adipose conversion. J Cell Biochem 67:84-91
59. Wang X, Klevitsky R, Huang W, Glasford J, Li F, Robbins J (2003) AlphaB-crystallin modulates protein aggregation of abnormal desmin. Circ Res 93(10):998-1005
60. Wang X, Seed B (2003) A PCR primer bank for quantitative gene expression analysis. Nucleic Acids Res 31:e154
61. Weigle DS, Kuijper JL (1996) Obesity genes and the regulation of body fat content. Bioessays 18:867-874
62. Wuttge DM, Romert A, Eriksson U, Torma H, Hansson GK, Sirsjo A (2001) Induction of CD36 by all-trans retinoic acid: retinoic acid receptor signaling in the pathogenesis of atherosclerosis. Faseb J 15:1221-1223
63. Xia Z, Cianflone K (2003) Acylation-stimulating protein precursor proteins in adipose tissue in human obesity. Metabolism 52:1360-1366
64. Yasuda K, Hirayoshi K, Hirata H, Kubota H, Hosokawa N, Nagata K (2002) The Kruppel-like Factor Zf9 and proteins in the Sp1 family regulate the expression of HSP47, a collagen-specific molecular chaperone. J Biol Chem 277:44613-44622