Mitochondrial DNA phylogeny of two morphologically enigmatic fishes in the subfamily Schizothoracinae (Teleostei: Cyprinidae) in the Qinghai-Tibetan Plateau

Journal of Fish Biology

Volumn 70, Issue SUPPL. A, 2007, Pages 60-74

  Qi, D ^a,b   Guo, S ^a,b   Tang, J ^c   Zhao, X ^a   Liu, J ^a  

^a NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c Fishery Environmental Monitoring Station of Qinghai Province   (China)

Author keywords

Evolution; Gymnocypris namensis; Herzenstein macrocephalus; Morphology; Phylogeny; Taxonomy

Indexed keywords

CYPRINIDAE; CYPRINIFORMES; GYMNOCYPRIS NAMENSIS; MACROCEPHALUS; PISCES; SCHIZOPYGOPSIS; SCHIZOTHORACINAE; TELEOSTEI;

EID: 33847067082     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2007.01366.x     Document Type: Article

References (43)

1. Avise, J. C. (1986). Mitochondrial DNA and the evolutionary genetics of higher animal. Philosophical Transactions of The Royal Society of London 312, 325-342.
2. Avise, J. C. & Saunders, N. C. (1984). Hybridization and introgression among species of sunfish (Lepomis) analysis by mitochondrial DNA and allozyme markers. Genetics 108, 237-255.
3. Bernard, J. C. & Michael J. F. (2004). Molecular systematics of Salmonidae: combined nuclear data yields a robust phylogeny. Molecular Phylogenetics and Evolution 31, 658-679.
4. Billington, N. & Hebert, P. D. N. (1988). Mitochondrial DNA variation in Great Lakes walleye (Stizostedion vitreum) populations. Canadian Journal of Fisheries and Aquatic Sciences 45, 643-654.
5. Burridge, C. P. (1999). Molecular phylogeny of Nemadactylus and Acantholatris (Perciformes: Cirrhitoides: Cheilodactylidae), with implications for taxonomy and biogeography. Molecular Phylogenetics and Evolution 13, 93-109.
6. Cantatore, P., Roberti, M., Pessole, G., Ludovico, A., Milella, F., Gadaleta, M. N. & Saccone, C. (1994). Evolutionary analysis of cytochrome b sequences in some perciformes: evidence for a slower rate of evolution than in mammals. Journal of Molecular Evolution 39, 589-597.
7. Cao, W. X., Chen, Y. Y., Wu, Y. F. & Zhu, S. Q. (1981). Origin and evolution of schizothoracine fishes in relation to the upheaval of Qinghai-Xizang Plateau, geological and ecological studies of Qinghai-Xizang Plateau. In Proceedings Symposium Qinghai-Xizang (Tibet) Plateau, Science Press, Beijing and Gordon & Breach Science Publishers, Inc., New York, pp. 1053-1060.
8. Chu, Y. T. (1935). Comparative studies on the scales and on the pharyngeals and their teeth in Chinese cyprinids, with particular reference to the taxonomy and evolution. Biological Bulletin of St. John's University Shanghai 2, 9-255.
9. Groves, P. & Shields, G. F. (1996). Phylogenetics of the Caprinae on cytochrome b sequence. Molecular Phylogenetics and Evolution 5, 467-476.
10. Guo, X., He, S. & Zhang, Y. (2005). Phylogeny and biogeography of Chinese sisorid catfishes re-examined using mitochondrial cytochrome b and 16S rRNA gene sequences. Molecular Phylogenetics and Evolution 35, 344-362.
11. He, D., Chen, Y., Chen, Y. & Chen, Z. (2004). Molecular phylogeny of the specialized schizothoracine fishes (Teleostei: Cyprinidae), with their implications for the uplift of the Qinghai-Tibetan Plateau. Chinese Science Bulletin 49, 39-48.
12. Huelsenbeck, J. P. & Ronquist, F. (2001). MTBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754-755.
13. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111-120.
14. Kishino, H. & Hasegawa, M. (1989). Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 29, 170-179.
15. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5, 150-163.
16. Li, J., Fang, X., Ma, H., Zhu, J. J., Pan, B. T. & Chen, H. L. (1996). Geomorphologic and environmental evolution in upper reaches of Yellow River during the late Cenozoic. Science in China (Series D) 39, 380-390.
17. Li, J. J. & Fang, X. M. (1998). Uplift of the Tibetan Plateau and environmental changes. Chinese Science Bulletin 44, 2117-2125.
18. Li, C. A., Ying, H. F. & Yu, Q. W. (2000). Evolution of draining systems and its developing trend in connection with tectonic uplift of Eastern Kunlun Mt. Chinese Science Bulletin 45, 1904-1908.
19. Liu, J. Q., Gao, T. G., Chen, Z. D. & Lu, A. M. (2002). Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae). Molecular Phylogenetics and Evolution 23, 307-325.
20. Liu, J. Q., Wang, Y. J., Wang, A. L., Ohba, H. & Abbott, R. J. (2006). Radiation and diversification within the Ligularia-Cremanthodium- Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau. Molecular Phylogenetics and Evolution 38, 31-49
21. Maddison, D. R. (1991). The discovery and importance of multiple islands of most-parsimonious tree. Systematic Zoology 40, 315-328.
22. Maddison, W. P. & Maddison, D. R. (1992). MacClade ver. 3.04. Sunderland, MA: Sinauer Associates.
23. Mirza, M. R. (1991). A contribution to the systematics of the Schizothoracine fishes (Pisces: Cyprinidae) with the description of three new tribes. Pakistan Journal of Zoology 23, 339-341.
24. Myers, N., Mittermeier, R. A., Mittermeier, C. G., da Fonseca, G. A. B. & Kent, J. (2000). Biodiversity hotspots for conservation priorities. Nature 403, 853-858.
25. Peng, Z., He, S. & Zhang, Y. (2004). Phylogenetic relationships of glyptosternoid fishes (Siluriformes: Sisoridae) inferred from mitochondrial cytochrome b gene sequences. Molecular Phylogenetics and Evolution 31, 979-987.
26. Posada, D. & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
27. Ren, M. L. & Wu, Y. F. (1982). Fishes of Nam Co lakes in Tibet. Acta Zoologica Sinica 28, 80-86.
28. Shi, Y. F., Li, J. J. & Li, B. Y. (1998). Uplift and environmental changes of Qinghai-Tibetan Plateau in the Late Cenozoic. Guangzhou: Guangdong Science and Technology Press.
29. Shimodaira, H. & Hasegawa, M. (1999). Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16, 1114-1116.
30. Steindachner, F. (1866). Ichthyologische Mittheilungen IV. Zur Fishfauna Kaschmirs und der Benacharten Landeratriche. Verh Zool - bot Gesell Wien 16, 784-796.
31. Strimmer, K. & von Haeseler, A. (1996). Quarter puzzling. A quarter maximum-likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 13, 964-969.
32. Swofford, D. L. (2000). PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sunderland, MA: Sinauer Associates.
33. Thompson, J. D., Gibson, T. J., Plewinak, F., Jeanmougin, F. & Higgins, D. G. (1997). The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24, 4876-4882.
34. Wang, A. L., Yang, M. H. & Liu, J. Q. (2005). Molecular phylogeny, recent radiation and evolution of gross morphology of the Rhubarb genus Rheum (Polygonaceae) inferred from chloroplast DNA trnL-F sequences. Annals of Botany 96, 489-498.
35. Wilson, E. O. (1992). The Diversity of Life. Cambridge: Harvard University Press.
36. Wu, X. W. (1964). The fauna of Chinese Cyprinidea in China. Shanghai: Shanghai Science and Technology Press.
37. Wu, Y. F. (1984). Systematics and taxonomy of the Schizothoracine fishes in China. Acta Biologica Plateau Sinica 3, 119-139.
38. Wu, Y. F. & Wu, C. Z. (1991). The fishes of the Qinghai - Xizang plateau. Chengdu: Sichuan Science and Technology Press.
39. Xiao, W., Zhang, Y. & Liu, H. (2001). Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia. Molecular Phylogenetics and Evolution 18, 163-173.
40. Yue, P. Q., Chan, X. H., Lin, R. D., Chu, X. L., Zhng, E., Chen, J. X., Chen, Y. F., Cao, W. X., Luo, Y. L., Chen, Y. Y. & Tang, W. Q. (2000). The fauna of animal in China-Teleostei, Cyprinidae. Beijing: Beijing Science and Technology Press.
41. Zheng, D. (1996). The system of physico-geographical regions of the Qinghai-Tibet (Xizang) Plateau. Science in China (Ser D) 39, 410-417.
42. Zhu, D. G., Zhao, X. T., Men, G. X., Wu, Z. H., Shao, Z. G., Wu, Z. H., Yang, C. B. & Wang, J. P. (2003). On the quaternary lacustrine deposits and the lacustrine landform of Nam Co, Xizang (Tibet). Journal of Jilin University (Earth science edition) 33, 156-161.
43. Zhu, D. G., Men, G. X., Zhao, X. T., Shao, Z. G., Yang, C. B., Ma, Z. B., Wu, Z. H. & Wang, J. P. (2004). Evolution and climatic change of Nam Co of Tibet and an ancient large lake in the northern Tibetan Plateau since the later Pleistocene. Geology in China 31, 269-277.