Phylogenetic relationships of glyptosternoid fishes (Siluriformes: Sisoridae) inferred from mitochondrial cytochrome b gene sequences

Molecular Phylogenetics and Evolution

Volumn 31, Issue 3, 2004, Pages 979-987

  Peng, Zuogang ^a   He, Shunping ^a   Zhang, Yaoguang ^b  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b SOUTHWEST UNIVERSITY   (China)

Author keywords

Cytochrome b; Glyptosternoids; Phylogeny; Sisoridae

Indexed keywords

EUCHILOGLANIS; EUCHILOGLANIS DAVIDI; GLYPTOSTERNON; OREOGLANIS; PARECHILOGLANIS SINENSIS; PAREUCHILOGLANIS; PAREUCHILOGLANIS ANTEANALIS; PISCES; PSEUDEXOSTOMA; SILURIFORMES; SISORIDAE;

EID: 2442434728     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2003.10.023     Document Type: Article

References (37)

1. Anderson, S., Bankier, A.T., Barrell, B.G., de Bruijn, M.H.L, Coulson, A.R., Drouin, J., Eperon, I.C., Nierlich, D.P., Roe, B.A., Sanger, F., Schreier, P.H., Smith, A.J.H., Staden, R., Young, I.G., 1981. Sequence and organization of the human mitochondrial genome. Nature 290, 457-464.
2. Cantatore, P., Roberti, M., Pesole, G., Ludovico, A., Milella, F., Gadaleta, M.N., Saccone, C., 1994. Evolutionary analysis of cytochrome b sequences in some perciformes: evidence for a slower rate of evolution than in Mammals. J. Mol. Evol. 39, 589-597.
3. Chu, X., 1979. Systematics and evolutionary pedigree of the glyptosternoid fishes (Family Sisoridae). Acta Zootaxon. Sinica 4, 72-82.
4. Chu, X., Zheng, B., Dai, D., 1999. Fauna Sinica, Class Teleostei, Siluriformes. Scientific Press, Beijing.
5. Farris, J.S., 1970. Methods for computing Wagner trees. Syst. Zool. 19, 83-92.
6. Felsenstein, J., 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
7. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Galtier, N., Gouy, M., Gautier, C., 1996. SEAVIEW and PHYLO_ WIN: Two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12, 543-548.
9. He, S., 1995. The analysis of historical biogeography for the glyptosternoid fishes (Teleostei: Siluroformes, Sisoridae). Biogeographica 71, 145-160.
10. He, S., 1996. The phylogeny of the glyptosternoid fishes (Teleostei: Siluriformes, Sisoridae). Cybium 20, 115-159.
11. He, S., Chen, Y., Zhang, Y., 1999. Preliminary study on mitochondrial cytochrome b DNA sequences and phylogeny of formalin fixed sisorid fishes (Teleostei: Siluriformes). Zool. Res. 20, 81-87.
12. Hora, S.L., 1939. The game fishes of Indian, Part VI. The Goonch, Bagarius bagarius (Hamilton). J. Bombay. Nat. Hist. Soc. 1939, 583-593.
13. Hora, S.L., 1952. Evolution and distribution of glyptosternoid fishes of the family Sisoridae Order: Siluroidea. Proc. Nat. Inst. Sci. Indian 28.
14. Hora, S.L., Silas, E.G., 1952. Notes on fishes in the Indian Museum. XLVII. Revision of glyptosternoid fishes of the family Sisoridae, with description of new genera and species. Rec. Indian Mus. 49, 5-30.
15. Huelsenbeck, J.P., Rannala, B., 1997. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276, 227-232.
16. Huelsenbeck, J.P., Ronquist, F., 2001. MrBayes: bayesian inference of phylogeny. Bioinformatics 17, 754-755.
17. Irwin, D.M., Kocher, T.D., Wilson, A.C., 1991. Evolution of the cytochrome b gene in mammals. J. Mol. Evol. 32, 128-144.
18. Johnson, J.B., Jordan, S., 2000. Phylogenetic divergence in leatherside chub (Gila copei) inferred from mitochondrial cytochrome b sequences. Mol. Ecol. 9, 1029-1035.
19. Kadereit, J.W., 1994. Molecules and morphology, phylogenetics and genetics. Bot. Acta 107, 369-373.
20. Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29, 170-179.
21. Lydeard, C., Roe, K.J., 1997. The phylogenetic utility of the mitochondrial cytochrome b gene for inferring relationships among Actinopterygian fishes. In: Kocher, T.D., Stepien, C.A. (Eds.), Molecular Systematics of Fishes. Academic Press, San Diego, pp. 285-303.
22. Mau, B., 1996. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Ph.D. dissertation, University of Wisconsin, Madison.
23. Miya, M., Nishida, M., 2000. Use of mitogenomic information in Teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol. Phylogenet. Evol. 17, 437-455.
24. Near, T.J., Porterfield, J.C., Page, L.M., 2000. Evolution of cytochrome b and the molecular syatematics of Ammocrypta (Percidae: Etheostomatinae). Copeia 2000, 701-711.
25. Peng, Z., He, S., Zhang, Y., 2002. Mitochondrial cytochrome b sequence variations and phylogeny of the East Aisan bagrid catflshes. Prog. Nat. Sci. 12, 421-425.
26. Posada, D., Crandall, K.A., 1998. Model test: testing the model of DNA substitution. Bioinfonnatics 14, 817-818.
27. Rannala, B., Yang, Z., 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43, 304-311.
28. Rzhetsky, A., Nei, M., 1993. Theoretical foundation of the minimum evolution method of phylogenetic inference. Mol. Biol. Evol. 10, 1073-1095.
29. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, second ed. Cold Spring Harbor Laboratory Press, New York.
30. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4. Sinauer, Sunderland, MA.
31. Templeton, A.R., 1983. Phylogenetic inference from restriction endonucleotide cleavage site maps with particular reference to the evolution of human and apes. Evolution 37, 221-244.
32. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougjn, F., Higgins, D.G., 1997. The Clustal X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
33. Xiao, W., Zhang, Y., Liu, H., 2001. Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia. Mol. Phylogenet Evol. 18, 163-173.
34. Yang, Z., 1994a. Estimating the pattern of nucleotide substitution. J. MoL Evol. 39, 105-111.
35. Yang, Z., 1994b. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39, 306-314.
36. Yu, N., Zheng, C., Zhang, Y.P., Li, W.H., 2000. Molecular systematics of pikas (Genus Ochotona) inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 16, 85-95.
37. Zardoya, R., Meyer, A., 1996. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol. Biol. Evol. 13, 933-942.