High diversity of fungi recovered from the roots of mature tanoak (Lithocarpus densiflorus) in northern California

Canadian Journal of Botany

Volumn 84, Issue 9, 2006, Pages 1380-1394

  Bergemann, S E ^a   Garbelotto, M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Cenoccocum geophilum; Community; Dark septate endophytes; Ectomycorrhiza; Species richness

Indexed keywords

ENZYME KINETICS; PLANTS (BOTANY);

CENOCCOCUM GEOPHILUM; DARK SEPTATE ENDOPHYTES; ECTOMYCORRHIZA; SPECIES RICHNESS;

FUNGI;

ABUNDANCE; DNA; ECTOMYCORRHIZA; ENDOPHYTE; EVERGREEN TREE; FUNGUS; POLYMERASE CHAIN REACTION; ROOT; ROOT COLONIZATION; SPECIES DIVERSITY; SPECIES RICHNESS; TAXONOMY;

ENZYMES; FUNGI; PLANTS;

CALIFORNIA; NORTH AMERICA; UNITED STATES;

ASCOMYCOTA; BANKERA; BASIDIOMYCOTA; BOLETOPSIS; CADOPHORA; CENOCOCCUM GEOPHILUM; FUNGI; HYDNELLUM; HYPHOMYCETES; LACHNUM; LACTARIUS; LITHOCARPUS; LITHOCARPUS DENSIFLORUS; MACOWANITES; PHIALOPHORA; QUERCUS; RUSSULA; RUSSULACEAE; THELEPHORALES; TOMENTELLA; TUBER (TRUFFLE); WILCOXINA; ZYGOMYCETES;

EID: 33847007702     PISSN: 00084026     EISSN: None     Source Type: Journal    
DOI: 10.1139/B06-097     Document Type: Article

References (52)

1. Addy, H.D., Piercy, M.M., and Currah, R.S. 2005. Microfungal endophytes in roots. Can. J. Bot. 83: 1-13. doi:10.1139/b04-171.
2. Allen, T.R., Millar, T., Berch, S.M., and Berbee, M.L. 2003. Culturing and DNA extraction find different fungi from the same ericoid mycorrhizal roots. New Phytol. 160: 255-272. doi:10.1046/j.1469-8137.2003.00885.x.
3. Anderson, I.C., and Cairney, J.W.G. 2004. Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. Environ. Microbiol. 6: 769-779. doi:10.1111/j.1462-2920. 2004.00675.x.
4. Bidartondo, M.I., Burghardt, B., Gebauer, G., Bruns, T.D., and Read, D.J. 2004. Changing partners in the dark: isotopic and molecular evidence of ectomycorrhizal liaisons between forest orchids and trees. Proc. R. Soc. Lond. B. Biol. Sci. 271: 1799-1806.
5. Cao, J.Z., Fan, L., and Liu, B. 1992. Notes on the genus Galiella in China. Mycologia, 84: 261-263.
6. Colwell, R.K. 2005. EstimateS: Statistical estimation of species richness and shared species from samples ver. 7.5. Available from http://purl.ococ.org/estimates.
7. Colwell, R.K., and Coddington, J.A. 1994. Estimating terrestrial biodiversity through extrapolation. Philos. Trans. R. Soc. Lond. B, Bioi. Sci. 345: 101-118.
8. Dimitrova, E. 2002. Discomycetous fungi of the Leotiales found on the Betulaceae in Bulgaria. Turk. J. Bot. 26: 253-258.
9. Douhan, G.W., and Rizzo, D.M. 2005. Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum. New Phytol. 166: 263-271. doi:10.1111/j.1469-8137.2004.01305.x.
10. Erland, S., and Taylor, A.F.S. 2002. Diversity of ecto-mycorrhizal fungal communities in relation to the abiotic environment. In Ecological studies. Vol. 157. Edited by M.G.A. van der Heijden and I. Sanders. Springer-Verlag, Berlin. pp. 163-200.
11. Erland, S., Jonsson, T., Mahmood, S., and Finlay, R.D. 1999. Belowground ecto-mycorrhizal community structure in two Picea abies forests in southern Sweden. Scand. J. For. Res. 14: 209-217.
12. Garbelotto, M., and Rizzo, D.M. 2005. A California-based chronological review (1995-2004) of research on Phytophthora ramorum, the causal agent of sudden oak death. Phytopathol. Mediterr. 44:127-143.
13. Gardes, M., and Bruns, T.D. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol. Ecol. 2: 113-118.
14. Gardes, M., and Bruns, T.D. 1996. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: above- and below-ground views. Can. J. Bot. 74: 1572-1583.
15. Glen, M., Tommerup, I.C., Bougher, N.L., and O'Bren, P.A. 2002. Are Sebacinaceae common and widespread ectomycorrhizal associates of Eucalyptus species in Australian forests? Mycorrhiza, 12: 243-247.
16. Horton, T.R., and Ashkannejhad, S.M. 2006. Ectomycorrhizal ecology under primary succession on coastal sand dunes: interactions involving Pinus conforta, suilloid fungi and deer. New Phytol. 169: 345-354.
17. Horton, T.R., and Bruns, T.D. 2001. The molecular revolution in ectomycorrhizal ecology: peeking into the black-box. Mol. Ecol. 10: 1855-1871. doi:10.1046/j.0962-1083.2001.01333.x.
18. Horton, T.R., Molina, R., and Hood, K. 2005. Douglas-fir ectomycorhizae in 40- and 400-year-old stands: mycobiont availability to late successional western hemlock. Mycorrhiza, 15: 393-403. doi:10.1007/s00572-004-0339-9.
19. Huelsenbeck, J.P., and Ronquist, F.R. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17: 754-755. doi:10.1093/ bioinformatics/17.8.754.
20. Izzo, A.D., Canright, M., and Bruns, T.D. 2006. The effects of heat treatments on ectomycorrhizal resistant propagules and their ability to colonize bioassay seedlings. Mycol. Res. 110: 196-202. doi:10.1016/j.mycres.2005. 08.010.
21. Jany, J.-L., Garbaye, J., and Martin, F. 2002. Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytol. 154: 651-659. doi:10.1046/j.1469-8137.2002.00408.x.
22. Johnson, D., Ijdo, M., Genney, D.R., Anderson, I.C., and Alexander, I.J. 2005. How do plants regulate the function, community structure, and diversity of fungi? J. Exp. Bot. 56: 1751-1760. doi:10.1093/jxb/eri192.
23. Jumpponen, A. 2001. Dark septate endophytes - are they mycorrhizal? Mycorrhiza, 11: 207-211. doi:10.1007/s005720100112.
24. Jumpponen, A., and Trappe, J.M. 1998. Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi. New Phytol. 140: 295-310. doi:10.1046/j.1469-8137.1998.00265.x.
25. Kennedy, P.G., Izzo, A.D., and Bruns, T.D. 2003. There is high potential for the formation of common mycorrhizal networks between understorey and canopy trees in a mixed evergreen forest. J. Ecol. 91: 1071-1080. doi:10.1046/j.1365-2745.2003.00829.x.
26. Kile, G.A., and Walker, J. 1987. Chalara australis sp. nov. (Hyphomycetes), a vascular pathogen of Nothofagus cunninghamii (Fagaceae) in Australia and its relationship to other Chalara species. Aust. J. Bot. 35: 1-32. doi:10.1071/BT9870001.
27. Kõljalg, U., Dahlberg, A., Taylor, A.F.S., Larsson, E., Hallenberg, N., Stenlid, J., Larsson, K.-H., Fransson, P.M., Kåren, O., and Jonsson, L. 2000. Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests. Mol. Ecol. 9: 1985-1996. doi:10.1046/j.1365-294X.2000.01105.x.
28. Mantiri, F.K., Samuels, G.J., Rahe, J.E., and Honda, B.M. 2001. Phylogenetic relationships in Neonectria species having Cylindrocarpon anamorphs inferred from mitochondrial ribosomal DNA sequences. Can. J. Bot. 79: 334-340. doi:10.1139/cjb-79-3-334.
29. Massicotte, H.B., Molina, R., Tackaberry, L.E., Smith, J.E., and Amaranthus, M.P. 1999. Diversity and host specificity of ectomycorrhizal fungi retrieved from three adjacent forest sites by five host species. Can. J. Bot. 77: 1053-1076. doi:10.1139/cjb-77-8-1053.
30. McFarland, J., and Largent, D.L. 2001. Headwaters Forest Reserve nonvascular plant survey. Bureau of Land Management, Arcata, Calif.
31. Niemiec, S.S., Ahrens, G.R., Willits, S., and Hibbs, D.E. 1995. Hardwoods of the Pacific Northwest. Res. Contrib. 8. Oregon State University, Corvallis, Oreg.
32. Nitare, J. 1988. Earth-tongues, a declining group of macrofungi in seminatural grasslands. Sven. Bot. Tidskr. 82: 341-368.
33. O'Donnell, K. 1993. Fusarium and its near relatives. In The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Edited by D.R. Reynolds and J.W. Taylor. CAB International, Wallingford, UK. pp. 25-233.
34. Rambaut, A. 1996. Se-Al: Sequence alignment editor. Available from http://evolve.zoo.ox.ac.uk/.
35. Richard, F., Moreau, P.-A., Selosse, M.-A., and Gardes, M. 2004. Diversity and fruiting patterns of ectomycorrhizal and saprobic fungi in an old-growth Mediterranean forest dominated by Quercus ilex L. Can. J. Bot. 82: 1711-1729. doi:10.1139/b04-128.
36. Richard, F., Millot, S., Gardes, M., and Selosse, M.-A. 2005. Diversity and specificity of ectomycorrhizal fungi retrieved from an old-growth Mediterranean forest dominated by Querem ilex. New Phytol. 166: 1011-1023. doi:10.1111/j.1469-8137.2005.01382.x.
37. Ririe, K.M., Rasmussen, P., and Wittwer, C.T. 1997. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 245: 154-160. doi:10.1006/abio.1996.9916.
38. Sakakibara, M., Jones, M.D., Gillespie, M., Hagerman, S.M., Forrest, M.E., Simard, S.W., and Durall, D.M. 2002. A comparison of ectomycorrhiza identification based on morphotyping and PCR-RFLP analysis. Mycol. Res. 106: 868-878. doi:10.1017/S0953756202006263.
39. Selosse, M.-A., Bauer, R., and Moyersoen, B. 2002. Basal hymenomycetes belonging to the Sebacinaceae are ectomycorrhizal on temperate deciduous trees. New Phytol. 155: 183-195. doi:10.1046/j.1469-8137.2002.00442.x.
40. Shinohara, M.L., LoBuglio, K.F., and Rogers, S.O. 1999. Comparison of ribosomal DNA ITS regions among geographic isolates of Cenococcum geophilum. Curr. Genet. 35: 527-535. doi:10.1007/s002940050449.
41. Smith, S.E., and Read, D.J. 1997. Mycorrhizal symbiosis. 2nd ed. Academic Press, London.
42. Swofford, D.L. 2003. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0b 10. Sinauer Associates, Sunderland, Mass.
43. Taylor, D.L., and Bruns, T.D. 1999. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities. Mol. Ecol. 8: 1837-1850. doi:10.1046/j.1365-294x.1999.00773.x.
44. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
45. Trappe, J.M. 1964. Mycorrhizal host and distribution of Cenococcum graniforme. Lloydia, 27: 100-106.
46. Valentine, L.L., Fiedler, T.L., Hart, A.N., Petersen, C.A., Berninghausen, H.K., and Southworth, D. 2004. Diversity of ectomycorrhizas associated with Quercus garryana in southern Oregon. Can. J. Bot. 82: 125-135.
47. Villarreal-Ruiz, L., Anderson, I.C., and Alexander, I.J. 2004. Interaction between an isolate from the Hymenoscyphus ericae aggregate and roots of Pinus and Vaccinium. New Phytol. 164: 183-192. doi:10.1111/j.1469-8137.2004.01167.x.
48. Vrålstad, T., Myhre, E., and Schumacher, T. 2002. Molecular diversity and phylogenetic affinities of symbiotic root-associated ascomycetes of the Helotiales in burnt and metal polluted habitats. New Phytol. 155: 131-148.
49. Walker, J.F., Miller, O.K., Jr., and Horton, J.L. 2005. Hyperdiversity of ectomycorrhizal fungal assemblages on oak seedlings in mixed forests in the southern Appalachian Mountains. Mol. Ecol. 14: 829-838. doi:10.1111/j.1365-294X.2005.02455.x.
50. Weiss, M., Selosse, M.-A., Rexer, K.-H., Urban, A., and Oberwinkler, F. 2004. Sebacinales, a hitherto overlooked cosm of heterobasidiomycetes with a broad mycorrhizal potential. Mycol. Res. 108: 1003-1010. doi:10.1017/S0953756204000772.
51. White, T.J., Bruns, T.D., Lee, S.B., and Taylor, J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA gene for phylogenetics. In PCR protocols: a guide to methods and applications. Edited by M.A. Innis, D.H. Gelfand, J.J. Sninsky, and T.J. White. Academic Press, New York. pp. 315-322.
52. Yu, T.E., Egger, K.N., and Peterson, R.L. 2001. Ectendomycorrhizal associations - characteristics and functions. Mycorrhiza, 11: 167-177. doi:10.1007/s005720100110.