Impact of forced selection of tRNAs on HIV-1 replication and genome stability highlight preferences for selection of certain tRNAs

Virus Research

Volumn 124, Issue 1-2, 2007, Pages 29-37

  Ni, Na ^a   Morrow, Casey D ^a  

^a UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

Author keywords

HIV; Primer binding site; Reverse transcription; tRNA

Indexed keywords

COMPLEMENTARY RNA; LYSINE TRANSFER RNA; PHENYLALANINE TRANSFER RNA; PRIMER RNA; SERINE TRANSFER RNA; THREONINE TRANSFER RNA; TYROSINE TRANSFER RNA;

ANIMAL CELL; ANTICODON; ARTICLE; CELL CULTURE; CONTROLLED STUDY; GENE MUTATION; GENETIC SELECTION; GENOME; GENOMIC INSTABILITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN TISSUE; IN VITRO STUDY; LYMPHOID CELL LINE; NONHUMAN; PERIPHERAL BLOOD MONONUCLEAR CELL; PRIORITY JOURNAL; T LYMPHOCYTE; VIRUS REPLICATION;

BASE SEQUENCE; CELL LINE; CELLS, CULTURED; GENOMIC INSTABILITY; HIV CORE PROTEIN P24; HIV-1; HUMANS; LEUKOCYTES, MONONUCLEAR; MOLECULAR SEQUENCE DATA; MUTATION; REVERSE TRANSCRIPTION; RNA; RNA, TRANSFER; RNA, TRANSFER, AMINO ACYL; RNA, VIRAL; VIRUS REPLICATION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 33846859758     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2006.09.009     Document Type: Article

References (31)

1. Baltimore D. RNA-dependent DNA polymerase in virions of RNA tumour viruses. Nature 226 (1970) 1209-1211
2. Lys,3. J. Virol. 69 5 (1995) 3090-3097
3. Derdeyn C.A., Decker J.M., Sfakianos J.N., Wu X., O'Brien W.A., Ratner L., Kappes J.C., Shaw G.M., and Hunter E. Sensitivity of human immunodeficiency virus type 1 to the fusion inhibitor T-20 modulated by coreceptor specificity defined by the V3 loop of gp120. J. Virol. 74 (2000) 8358-8367
4. Glu for replication. J. Virol. 77 16 (2003) 8756-8764
5. Gilboa E., Mitra S.W., Goff S., and Baltimore D. A detailed model of reverse transcription and tests of crucial aspects. Cell 18 (1979) 93-100
6. Goldschmidt V., Rigourd M., Ehresmann C., Le Grice S.F.J., Ehresmann B., and Marquet R. Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription. J. Biol. Chem. 277 45 (2002) 43233-43242
7. Met supports a role for U5-PBS stem-loop RNA structures in initiation of HIV-1 reverse transcription. J. Virol. 73 (1999) 1818-1827
8. Kang S.-M., Wakefield J.K., and Morrow C.D. Mutations in both the U5 region and the primer-binding site influence the selection of the tRNA used for the initiation of HIV-1 reverse transcription. Virology 222 (1996) 401-414
9. Met. J. Virol. 71 1 (1997) 207-217
10. Lys,3 for initiation of reverse transcription. Virology 257 (1999) 95-105
11. Kelly N.J., Palmer M.T., and Morrow C.D. Selection of retroviral reverse transcription primer is coordinated with tRNA biogenesis. J. Virol. 77 (2003) 8695-8701
12. Li X., Mak J., Arts E.J., Gu Z., Kleiman L., Wainberg M.A., and Parniak M.A. Effects of alterations of primer-binding site sequences on human immunodeficiency virus type 1 replication. J. Virol. 68 10 (1994) 6198-6206
13. Lund A.H., Duch M., Lovmand J., Jorgensen P., and Pedersen F.S. Mutated primer binding sites interacting with different tRNAs allow efficient murine leukemia virus replication. J. Virol. 67 (1993) 7125-7130
14. gag-pol incorporation into HIV-1. J. Mol. Biol. 265 (1997) 419-431
15. Marquet R., Isel C., Ehresmann C., and Ehresmann B. tRNAs as primer of reverse transcriptases. Biochimie 77 (1995) 113-124
16. Lys1,2 as primers for reverse transcription exhibit different infectivities in peripheral blood mononuclear cells. AIDS Res. Hum. Retrov. 20 4 (2004) 373-381
17. Moore-Rigdon K.L., Kosloff B.R., Kirkman R.L., and Morrow C.D. Preferences for the selection of unique tRNA primers revealed from analysis of HIV-1 replication in peripheral blood mononuclear cells. Retrovirology 2 21 (2005)
18. Phe reveals inherent preferences for the tRNA primer selected for reverse transcription. Virology 324 2 (2004) 430-438
19. Panet A., and Berliner H. Binding of tRNA to reverse transcriptase of RNA tumor viruses. J. Virol. 26 (1978) 214-220
20. Peters G., and Dahlberg J.E. RNA-directed DNA synthesis in Moloney murine leukemia virus: Interaction between the primer tRNA and the genome RNA. J. Virol. 31 (1979) 398-407
21. Puglisi E.V., and Puglisi J.D. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure. Nat. Struct. Biol. 5 12 (1998) 1033-1036
22. Lys primer-binding site of human immunodeficiency virus type 1 identify essential regions for reverse transcription. J. Virol. 65 (1991) 4555-4564
23. Sprinzl M., Dank N., Nock S., and Schon A. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 19 Suppl. (1991) 2127-2171
24. Temin H.M. Structure, variation and synthesis of retrovirus long terminal repeat. Cell 27 (1981) 1-3
25. Temin H.M., and Mizutani S. RNA-dependent DNA polymerase in virions of Rous sarcoma virus. Nature 226 (1970) 1211-1213
26. His. J. Virol. 70 (1996) 966-975
27. Wakefield J.K., and Morrow C.D. Mutations within the primer binding site of the human immunodeficiency virus type 1 define sequence requirements essential for reverse transcription. Virology 220 (1996) 290-298
28. Wakefield J.K., Rhim H., and Morrow C.D. Minimal sequence requirements of a functional human immunodeficiency virus type 1 primer binding site. J. Virol. 68 (1994) 1605-1614
29. Lys,3. J. Virol. 69 (1995) 6021-6029
30. Whitcomb J.M., Ortiz-Conde B.A., and Hughes S.H. Replication of avian leukosis viruses with mutations at the primer binding site: use of alternative tRNAs as primers. J. Virol. 69 10 (1995) 6228-6238
31. Zhang Z., Kang S.-M., Li Y., and Morrow C.D. Genetic analysis of the U5-PBS of a novel HIV-1 reveals multiple interactions between the tRNA and RNA genome required for initiation of reverse transcription. RNA 4 (1998) 394-406