-
1
-
-
84971030466
-
Further studies on epidemiological factors influencing control of banana bunchy top disease, and evaluation of control measures by computer simulation
-
Allen, R. N. 1987. Further studies on epidemiological factors influencing control of banana bunchy top disease, and evaluation of control measures by computer simulation. Aus. J. Agric. Res. 38:373-382.
-
(1987)
Aus. J. Agric. Res
, vol.38
, pp. 373-382
-
-
Allen, R.N.1
-
2
-
-
0004187047
-
-
Harvard University Press, Cambridge, MA
-
Avise, J. C. 2000. Phylogeography. Harvard University Press, Cambridge, MA.
-
(2000)
Phylogeography
-
-
Avise, J.C.1
-
3
-
-
0032899642
-
Banana bunchy top virus DNA-2 to 6 are monocistronic
-
Beetham, P. R., R. M. Harding, and J. L. Dale. 1999. Banana bunchy top virus DNA-2 to 6 are monocistronic. Arch. Virol. 144:89-105.
-
(1999)
Arch. Virol
, vol.144
, pp. 89-105
-
-
Beetham, P.R.1
Harding, R.M.2
Dale, J.L.3
-
4
-
-
0035983118
-
Characterisation of Rep-encoding components associated with banana bunchy top nanovirus in Vietnam
-
Bell, K. E., J. L. Dale, C. V. Ha, M. T. Vu, and P. A. Revill. 2002. Characterisation of Rep-encoding components associated with banana bunchy top nanovirus in Vietnam. Arch. Virol. 147:695-707.
-
(2002)
Arch. Virol
, vol.147
, pp. 695-707
-
-
Bell, K.E.1
Dale, J.L.2
Ha, C.V.3
Vu, M.T.4
Revill, P.A.5
-
5
-
-
1542347067
-
Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
-
Bryant, D., and V. Moulton. 2004. Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21:255-265.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
6
-
-
0029071083
-
The genome organization of Banana bunchy top virus: Analysis of six ssDNA components
-
Burns, T. M., R. M. Harding, and J. L. Dale. 1995. The genome organization of Banana bunchy top virus: analysis of six ssDNA components. J. Gen. Virol. 76:1471-1482.
-
(1995)
J. Gen. Virol
, vol.76
, pp. 1471-1482
-
-
Burns, T.M.1
Harding, R.M.2
Dale, J.L.3
-
7
-
-
14544301585
-
Codon bias signatures, organization of microorganisms in codon space, and lifestyle
-
Carbone, A., F. Kepes, and A. Zinovyev. 2005. Codon bias signatures, organization of microorganisms in codon space, and lifestyle. Mol. Biol. Evol. 22:547-561.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 547-561
-
-
Carbone, A.1
Kepes, F.2
Zinovyev, A.3
-
8
-
-
0030816742
-
Can three incongruence tests predict when data should be combined?
-
Cunningham, C. W. 1997. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14:733-740.
-
(1997)
Mol. Biol. Evol
, vol.14
, pp. 733-740
-
-
Cunningham, C.W.1
-
9
-
-
0031224810
-
Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
-
Cunningham, C. W. 1997. Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46:464-478.
-
(1997)
Syst. Biol
, vol.46
, pp. 464-478
-
-
Cunningham, C.W.1
-
10
-
-
0023079507
-
Banana bunchy top: An economically important tropical plant virus disease
-
Dale, J. L. 1987. Banana bunchy top: an economically important tropical plant virus disease. Adv. Virus Res. 33:301-325.
-
(1987)
Adv. Virus Res
, vol.33
, pp. 301-325
-
-
Dale, J.L.1
-
11
-
-
0034512402
-
Noise and incongruence: Interpreting results of the incongruence length difference test
-
Dolphin, K., R. Belshaw, C. D. L. Orme, and D. L. J. Quicke. 2000. Noise and incongruence: interpreting results of the incongruence length difference test. Mol. Phylogenet. Evol. 17:401-406.
-
(2000)
Mol. Phylogenet. Evol
, vol.17
, pp. 401-406
-
-
Dolphin, K.1
Belshaw, R.2
Orme, C.D.L.3
Quicke, D.L.J.4
-
12
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabdilis, Drosophila, and Arabidopsis
-
Duret, L., and D. Mouchiroud. 1999. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabdilis, Drosophila, and Arabidopsis. Proc. Natl. Acad. Sci. USA 96:4482-4487.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
13
-
-
13844275303
-
Recombination Analysis Tool (RAT): A program for the high-throughput detection of recombination
-
Etherington, G. J., J. Dicks, and I. N. Roberts. 2005. Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination. Bioinformatics 21:278-281.
-
(2005)
Bioinformatics
, vol.21
, pp. 278-281
-
-
Etherington, G.J.1
Dicks, J.2
Roberts, I.N.3
-
14
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J. S., M. Källersjö, A. G. Kluge, and C. Bull. 1995. Testing significance of incongruence. Cladistics 10:315-319.
-
(1995)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bull, C.4
-
15
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
-
(1978)
Syst. Zool
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
16
-
-
18444401151
-
Characterization and genetic status of banana bunchy top virus isolated from Okinawa, Japan
-
Furuya, N., S. Kawano, and K. T. Natsuaki. 2005. Characterization and genetic status of banana bunchy top virus isolated from Okinawa, Japan. J. Gen. Plant Pathol. 71:68-73.
-
(2005)
J. Gen. Plant Pathol
, vol.71
, pp. 68-73
-
-
Furuya, N.1
Kawano, S.2
Natsuaki, K.T.3
-
17
-
-
33846800122
-
Virus detection from local banana cultivars and the first molecular characterization of Banana bunchy top virus in Indonesia
-
Furuya, N., S. Somowiyarjo, and K. T. Natsuaki. 2004. Virus detection from local banana cultivars and the first molecular characterization of Banana bunchy top virus in Indonesia. J. Agric. Sci. Tokyo Univ. Agric. 49:75-81.
-
(2004)
J. Agric. Sci. Tokyo Univ. Agric
, vol.49
, pp. 75-81
-
-
Furuya, N.1
Somowiyarjo, S.2
Natsuaki, K.T.3
-
18
-
-
0029968635
-
Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation
-
Futterer, J., I. Potrykus, Y. M. Bao, L. Li, T. M. Burns, R. Hull, and T. Hohn. 1996. Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation. J. Virol. 70:2999-3010.
-
(1996)
J. Virol
, vol.70
, pp. 2999-3010
-
-
Futterer, J.1
Potrykus, I.2
Bao, Y.M.3
Li, L.4
Burns, T.M.5
Hull, R.6
Hohn, T.7
-
20
-
-
0033670249
-
Horizontal gene transfer in bacterial and archaeal complete genomes
-
Garcia-Vallve, S., A. Romeu, and J. Palau. 2000. Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res. 10:1719-1725.
-
(2000)
Genome Res
, vol.10
, pp. 1719-1725
-
-
Garcia-Vallve, S.1
Romeu, A.2
Palau, J.3
-
21
-
-
0026071382
-
Virus-like particles associated with banana bunchy top disease contain small single-stranded-DNA
-
Harding, R. M., T. M. Burns, and J. L. Dale. 1991. Virus-like particles associated with banana bunchy top disease contain small single-stranded-DNA. J. Gen. Virol. 72:225-230.
-
(1991)
J. Gen. Virol
, vol.72
, pp. 225-230
-
-
Harding, R.M.1
Burns, T.M.2
Dale, J.L.3
-
22
-
-
0027413824
-
Nucleotide-sequence of one-component of the Banana bunchy top virus genome contains a putative replicase gene
-
Harding, R. M., T. M. Burns, G. Hafner, R. G. Dietzgen, and J. L. Dale. 1993. Nucleotide-sequence of one-component of the Banana bunchy top virus genome contains a putative replicase gene. J. Gen. Virol. 74:323-328.
-
(1993)
J. Gen. Virol
, vol.74
, pp. 323-328
-
-
Harding, R.M.1
Burns, T.M.2
Hafner, G.3
Dietzgen, R.G.4
Dale, J.L.5
-
23
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
24
-
-
18444383841
-
Cloning and sequencing of DNA component 1 of two BBTV strains
-
In Chinese
-
He, Z. F., H. P. Li, H. G. Xiao, and H. Z. Fan. 2000. Cloning and sequencing of DNA component 1 of two BBTV strains. Chih Wu Ping Li Hsueh Pao 30:364-369. [In Chinese.]
-
(2000)
Chih Wu Ping Li Hsueh Pao
, vol.30
, pp. 364-369
-
-
He, Z.F.1
Li, H.P.2
Xiao, H.G.3
Fan, H.Z.4
-
25
-
-
33846840230
-
Cloning and sequencing of DNA component 3 of two BBTV strains
-
In Chinese
-
He, Z. F., H. P. Li, H. G. Xiao, and H. Z. Fan. 2001. Cloning and sequencing of DNA component 3 of two BBTV strains. Nongye Shengwu Jisu Xuebao 9:145-148. [In Chinese.]
-
(2001)
Nongye Shengwu Jisu Xuebao
, vol.9
, pp. 145-148
-
-
He, Z.F.1
Li, H.P.2
Xiao, H.G.3
Fan, H.Z.4
-
26
-
-
33846780826
-
Cloning and sequencing of DNA component 6 of two BBTV strains
-
In Chinese
-
He, Z. F., H. P. Li, H. G. Xiao, and H. Z. Fan. 2001. Cloning and sequencing of DNA component 6 of two BBTV strains. Hua Nan Nung Yeh Ta Hsueh Hsueh Pao 22:33-36. [In Chinese.]
-
(2001)
Hua Nan Nung Yeh Ta Hsueh Hsueh Pao
, vol.22
, pp. 33-36
-
-
He, Z.F.1
Li, H.P.2
Xiao, H.G.3
Fan, H.Z.4
-
27
-
-
1642356002
-
Congruence versus phylogenetic accuracy: Revisiting the incongruence length difference test
-
Hipp, A. L., J. C. Hall, and K. J. Sytsma. 2004. Congruence versus phylogenetic accuracy: Revisiting the incongruence length difference test. Syst. Biol. 53:81-89.
-
(2004)
Syst. Biol
, vol.53
, pp. 81-89
-
-
Hipp, A.L.1
Hall, J.C.2
Sytsma, K.J.3
-
28
-
-
0033021298
-
Phylogenetic evidence for recombination in Dengue virus
-
Holmes, E. C., M. Worobey, and A. Rambaut. 1999. Phylogenetic evidence for recombination in Dengue virus. Mol. Biol. Evol. 16:405-409.
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 405-409
-
-
Holmes, E.C.1
Worobey, M.2
Rambaut, A.3
-
29
-
-
0035144235
-
Banana bunchy top nanovirus DNA-1 encodes the "master" replication initiation protein
-
Horser, C. L., R. M. Harding, and J. L. Dale. 2001. Banana bunchy top nanovirus DNA-1 encodes the "master" replication initiation protein. J. Gen. Virol. 82:459-464.
-
(2001)
J. Gen. Virol
, vol.82
, pp. 459-464
-
-
Horser, C.L.1
Harding, R.M.2
Dale, J.L.3
-
30
-
-
0035092054
-
Additional Rep-encoding DNAs associated with Banana bunchy top virus
-
Horser, C. L., M. Karan, R. M. Harding, and J. L. Dale. 2001. Additional Rep-encoding DNAs associated with Banana bunchy top virus. Arch. Virol. 146:71-86.
-
(2001)
Arch. Virol
, vol.146
, pp. 71-86
-
-
Horser, C.L.1
Karan, M.2
Harding, R.M.3
Dale, J.L.4
-
31
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
32
-
-
0842331107
-
Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses
-
Hughes, A. L. 2004. Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses. Mol. Phylogenet. Evol. 30:287-294.
-
(2004)
Mol. Phylogenet. Evol
, vol.30
, pp. 287-294
-
-
Hughes, A.L.1
-
33
-
-
24944520911
-
Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes
-
Hughes, A. L., and M. A. K. Hughes. 2005. Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes. Virus Res. 113:81-88.
-
(2005)
Virus Res
, vol.113
, pp. 81-88
-
-
Hughes, A.L.1
Hughes, M.A.K.2
-
34
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson, D. H., and D. Bryant. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
-
(2006)
Mol. Biol. Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
35
-
-
33846782401
-
International Network for the Improvement of Banana and Plantain
-
INIBAP:, INIBAP, Montpellier, France
-
INIBAP: International Network for the Improvement of Banana and Plantain. 2000. Banana: food for the poor. INIBAP, Montpellier, France.
-
(2000)
Banana: Food for the poor
-
-
-
36
-
-
0030994945
-
The partition matrix: Exploring variable phylogenetic signals along nucleotide sequence alignments
-
Jakobsen, I. B., S. R. Wilson, and S. Easteal. 1997. The partition matrix: Exploring variable phylogenetic signals along nucleotide sequence alignments. Mol. Biol. Evol. 14:474-484.
-
(1997)
Mol. Biol. Evol
, vol.14
, pp. 474-484
-
-
Jakobsen, I.B.1
Wilson, S.R.2
Easteal, S.3
-
38
-
-
0028624703
-
Evidence for two groups of Banana bunchy top virus isolates
-
Karan, M., R. M. Harding, and J. L. Dale. 1994. Evidence for two groups of Banana bunchy top virus isolates. J. Gen. Virol. 75:3541-3546.
-
(1994)
J. Gen. Virol
, vol.75
, pp. 3541-3546
-
-
Karan, M.1
Harding, R.M.2
Dale, J.L.3
-
39
-
-
0032424036
-
Ten distinct circular ssDNA components, four of which encode putative replication-associated proteins, are associated with the Faba bean necrotic yellows virus genome
-
Katul, L., T. Timchenko, B. Gronenborn, and H. J. Vetten. 1998. Ten distinct circular ssDNA components, four of which encode putative replication-associated proteins, are associated with the Faba bean necrotic yellows virus genome. J. Gen. Virol. 79:3101-3109.
-
(1998)
J. Gen. Virol
, vol.79
, pp. 3101-3109
-
-
Katul, L.1
Timchenko, T.2
Gronenborn, B.3
Vetten, H.J.4
-
40
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
-
Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
-
(1989)
J. Mol. Evol
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
41
-
-
0025181359
-
Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
-
Kishino, H., T. Miyata, and M. Hasegawa. 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 31:151-160.
-
(1990)
J. Mol. Evol
, vol.31
, pp. 151-160
-
-
Kishino, H.1
Miyata, T.2
Hasegawa, M.3
-
42
-
-
0031741481
-
Escherichia coli molecular phylogeny using the incongruence length difference test
-
Lecointre, G., L. Rachdi, P. Darlu, and E. Denamur. 1998. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 15:1685-1695.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 1685-1695
-
-
Lecointre, G.1
Rachdi, L.2
Darlu, P.3
Denamur, E.4
-
43
-
-
0023064998
-
Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons
-
Li, W. H. 1987. Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons. J. Mol. Evol. 24:337-344.
-
(1987)
J. Mol. Evol
, vol.24
, pp. 337-344
-
-
Li, W.H.1
-
44
-
-
0030862820
-
Natural recombination among plant virus genomes: Evidence from tobraviruses
-
MacFarlane, S. A. 1997. Natural recombination among plant virus genomes: evidence from tobraviruses. Semin. Virol. 8:25-31.
-
(1997)
Semin. Virol
, vol.8
, pp. 25-31
-
-
MacFarlane, S.A.1
-
45
-
-
0010090363
-
Transmission studies on the banana bunchy top virus
-
Magee, C. J. P. 1940. Transmission studies on the banana bunchy top virus. J. Austr. Inst. Agric. Sci. 6:109-110.
-
(1940)
J. Austr. Inst. Agric. Sci
, vol.6
, pp. 109-110
-
-
Magee, C.J.P.1
-
46
-
-
0033587333
-
Identification of a novel circular single-stranded DNA associated with cotton leaf curl disease in Pakistan
-
Mansoor, S., S. H. Khan, A. Bashir, M. Saeed, Y. Zafar, K. A. Malik, R. Briddon, J. Stanley, and P. G. Markham. 1999. Identification of a novel circular single-stranded DNA associated with cotton leaf curl disease in Pakistan. Virology 259:190-199.
-
(1999)
Virology
, vol.259
, pp. 190-199
-
-
Mansoor, S.1
Khan, S.H.2
Bashir, A.3
Saeed, M.4
Zafar, Y.5
Malik, K.A.6
Briddon, R.7
Stanley, J.8
Markham, P.G.9
-
47
-
-
0030311441
-
Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
-
Mason-Gamer, R. J., and E. A. Kellogg. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 45:524-545.
-
(1996)
Syst. Biol
, vol.45
, pp. 524-545
-
-
Mason-Gamer, R.J.1
Kellogg, E.A.2
-
48
-
-
24644443227
-
The functional genomics of noncoding RNA
-
Mattick, J. S. 2005. The functional genomics of noncoding RNA. Science 309:1527-1528.
-
(2005)
Science
, vol.309
, pp. 1527-1528
-
-
Mattick, J.S.1
-
49
-
-
0026332291
-
Evidence for horizontal gene-transfer in Escherichia coli speciation
-
Medigue, C., T. Rouxel, P. Vigier, A. Henaut, and A. Danchin. 1991. Evidence for horizontal gene-transfer in Escherichia coli speciation. J. Mol. Biol. 222:851-856.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 851-856
-
-
Medigue, C.1
Rouxel, T.2
Vigier, P.3
Henaut, A.4
Danchin, A.5
-
50
-
-
0035933528
-
Finding new ways to fight plant diseases
-
Moffat, A. S. 2001. Finding new ways to fight plant diseases. Science 292:2270-2273.
-
(2001)
Science
, vol.292
, pp. 2270-2273
-
-
Moffat, A.S.1
-
51
-
-
0032126484
-
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
-
Moriyama, E. N., and J. R. Powell. 1998. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 26:3188-3193.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 3188-3193
-
-
Moriyama, E.N.1
Powell, J.R.2
-
52
-
-
8844280220
-
Correspondence analysis of amino acid usage within the family Bacillaceae
-
Naya, H., A. Zavala, H. Romero, H. Rodriguez-Maseda, and H. Musto. 2004. Correspondence analysis of amino acid usage within the family Bacillaceae. Biochem. Biophys. Res. Commun. 325:1252-1257.
-
(2004)
Biochem. Biophys. Res. Commun
, vol.325
, pp. 1252-1257
-
-
Naya, H.1
Zavala, A.2
Romero, H.3
Rodriguez-Maseda, H.4
Musto, H.5
-
53
-
-
0028205770
-
Two proteins of a plant DNA virus coordinate nuclear and plasmodesmal transport
-
Noueiry, A. O., W. J. Lucas, and R. L. Gilbertson. 1994. Two proteins of a plant DNA virus coordinate nuclear and plasmodesmal transport. Cell 76:925-932.
-
(1994)
Cell
, vol.76
, pp. 925-932
-
-
Noueiry, A.O.1
Lucas, W.J.2
Gilbertson, R.L.3
-
54
-
-
0030976687
-
On the informational content of overlapping genes in prokaryotic and eukaryotic viruses
-
Pavesi, A., B. DeIaco, M. I. Granero, and A. Porati. 1997. On the informational content of overlapping genes in prokaryotic and eukaryotic viruses. J. Mol. Evol. 44:625-631.
-
(1997)
J. Mol. Evol
, vol.44
, pp. 625-631
-
-
Pavesi, A.1
DeIaco, B.2
Granero, M.I.3
Porati, A.4
-
55
-
-
33846782400
-
-
Peden, J. F. 1997. Codon W: codon usage analysis package, 1.3 ed. Oxford University Molecular Biology Data Centre, Oxford, United Kingdom.
-
Peden, J. F. 1997. Codon W: codon usage analysis package, 1.3 ed. Oxford University Molecular Biology Data Centre, Oxford, United Kingdom.
-
-
-
-
56
-
-
0037109119
-
Use and misuse of correspondence analysis in codon usage studies
-
Perriere, G., and J. Thioulouse. 2002. Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Res. 30:4548-4555.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4548-4555
-
-
Perriere, G.1
Thioulouse, J.2
-
57
-
-
31344454068
-
Tree disagreement: Measuring and testing incongruence in phylogenies
-
Planet, P. J. 2006. Tree disagreement: measuring and testing incongruence in phylogenies. J. Biomed. Inform. 39:86-102.
-
(2006)
J. Biomed. Inform
, vol.39
, pp. 86-102
-
-
Planet, P.J.1
-
59
-
-
0001555857
-
Two anomalous tobravirus isolates: Evidence for RNA recombination in nature
-
Robinson, D. J., W. D. O. Hamilton, B. D. Harrison, and D. C. Baulcombe. 1987. Two anomalous tobravirus isolates: evidence for RNA recombination in nature. J. Gen. Virol. 68:2551-2561.
-
(1987)
J. Gen. Virol
, vol.68
, pp. 2551-2561
-
-
Robinson, D.J.1
Hamilton, W.D.O.2
Harrison, B.D.3
Baulcombe, D.C.4
-
60
-
-
30544433254
-
Symbiosis versus competition in plant virus evolution
-
Roossinck, M. J. 2005. Symbiosis versus competition in plant virus evolution. Nat. Rev. Microbiol. 3:917-924.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 917-924
-
-
Roossinck, M.J.1
-
61
-
-
0037663940
-
Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses
-
Salemi, M., T. De Oliveira, V. Courgnaud, V. Moulton, B. Holland, S. Cassol, W. M. Switzer, and A. M. Vandamme. 2003. Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses. J. Virol. 77:7202-7213.
-
(2003)
J. Virol
, vol.77
, pp. 7202-7213
-
-
Salemi, M.1
De Oliveira, T.2
Courgnaud, V.3
Moulton, V.4
Holland, B.5
Cassol, S.6
Switzer, W.M.7
Vandamme, A.M.8
-
62
-
-
0028854284
-
Cooperation in viral movement: The geminivirus BL1 movement protein interacts with BR1 and redirects it from the nucleus to the cell periphery
-
Sanderfoot, A. A., and S. G. Lazarowitz. 1995. Cooperation in viral movement: the geminivirus BL1 movement protein interacts with BR1 and redirects it from the nucleus to the cell periphery. Plant Cell 7:1185-1194.
-
(1995)
Plant Cell
, vol.7
, pp. 1185-1194
-
-
Sanderfoot, A.A.1
Lazarowitz, S.G.2
-
63
-
-
0032409143
-
Sequences of ten circular ssDNA components associated with the milk vetch dwarf virus genome
-
Sano, Y., M. Wada, Y. Hashimoto, T. Matsumoto, and M. Kojima. 1998. Sequences of ten circular ssDNA components associated with the milk vetch dwarf virus genome. J. Gen. Virol. 79:3111-3118.
-
(1998)
J. Gen. Virol
, vol.79
, pp. 3111-3118
-
-
Sano, Y.1
Wada, M.2
Hashimoto, Y.3
Matsumoto, T.4
Kojima, M.5
-
64
-
-
0033278884
-
Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus
-
Sanz, A. I., A. Fraile, J. M. Gallego, J. M. Malpica, and F. Garcia-Arenal. 1999. Genetic variability of natural populations of cotton leaf curl geminivirus, a single-stranded DNA virus. J. Mol. Evol. 49:672-681.
-
(1999)
J. Mol. Evol
, vol.49
, pp. 672-681
-
-
Sanz, A.I.1
Fraile, A.2
Gallego, J.M.3
Malpica, J.M.4
Garcia-Arenal, F.5
-
65
-
-
0033544336
-
A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: Evidence for interfamilial recombination between plant DNA viruses
-
Saunders, K., and J. Stanley. 1999. A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for interfamilial recombination between plant DNA viruses. Virology 264:142-152.
-
(1999)
Virology
, vol.264
, pp. 142-152
-
-
Saunders, K.1
Stanley, J.2
-
66
-
-
0029912374
-
Non-canonical translation mechanisms in plants: Efficient in vitro and in planta initiation at AUU codons of the tobacco mosaic virus enhancer sequence
-
Schmitz, J., D. Prufer, W. Rohde, and E. Tacke. 1996. Non-canonical translation mechanisms in plants: efficient in vitro and in planta initiation at AUU codons of the tobacco mosaic virus enhancer sequence. Nucleic Acids Res. 24:257-263.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 257-263
-
-
Schmitz, J.1
Prufer, D.2
Rohde, W.3
Tacke, E.4
-
67
-
-
0022856787
-
An evolutionary perspective on codon usage in unicellular organisms
-
Sharp, P. M., and W.-H. Li. 1986. An evolutionary perspective on codon usage in unicellular organisms. J. Mol. Evol. 24:28-38.
-
(1986)
J. Mol. Evol
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.-H.2
-
68
-
-
0027715731
-
Codon usage: Mutational bias, translational selection, or both?
-
Sharp, P. M., M. Stenico, J. F. Peden, and A. T. Lloyd. 1993. Codon usage: mutational bias, translational selection, or both? Biochem. Soc. Trans. 21:835-841.
-
(1993)
Biochem. Soc. Trans
, vol.21
, pp. 835-841
-
-
Sharp, P.M.1
Stenico, M.2
Peden, J.F.3
Lloyd, A.T.4
-
69
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
70
-
-
0018950969
-
Protein constraints induced by multiframe encoding
-
Smith, T. F., and M. S. Waterman. 1980. Protein constraints induced by multiframe encoding. Math. Biosci. 49:17-26.
-
(1980)
Math. Biosci
, vol.49
, pp. 17-26
-
-
Smith, T.F.1
Waterman, M.S.2
-
71
-
-
48349087713
-
Pathological and molecular characterization of Banana bunchy top virus (BBTV) strains in Asia
-
A. B. Molina, V. A. Roa, J. Bay-Petersen, A. T. Carpio, and J. E. A. Joven ed, INIBAP, Montpellier, France
-
Su, H. J., L. Y. Tsao, and T. H. Hung. 1998. Pathological and molecular characterization of Banana bunchy top virus (BBTV) strains in Asia, p. 164. In A. B. Molina, V. A. Roa, J. Bay-Petersen, A. T. Carpio, and J. E. A. Joven (ed.), Managing banana and citrus diseases, INIBAP, Montpellier, France.
-
(1998)
Managing banana and citrus diseases
, pp. 164
-
-
Su, H.J.1
Tsao, L.Y.2
Hung, T.H.3
-
72
-
-
10244235330
-
Biological and molecular categorization of strains of Banana bunchy top virus
-
Su, H. J., L. Y. Tsao, M. L. Wu, and T. H. Hung. 2003. Biological and molecular categorization of strains of Banana bunchy top virus. J. Phytopathol. 151:290-296.
-
(2003)
J. Phytopathol
, vol.151
, pp. 290-296
-
-
Su, H.J.1
Tsao, L.Y.2
Wu, M.L.3
Hung, T.H.4
-
73
-
-
33846814609
-
-
Swofford, D. L. 2002. PAUP*: phylogenetic analysis using parsimony *and other methods, version 4.0beta10. Sinauer Associates, Inc, Sunderland, MA
-
Swofford, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0beta10. Sinauer Associates, Inc., Sunderland, MA.
-
-
-
-
74
-
-
0001336205
-
Phylogeny reconstruction
-
D. M. Hillis, C. Moritz, and B. K. Mable ed, 2nd ed. Sinauer Associates, Sunderland, MA
-
Swofford, D. L., G. K. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogeny reconstruction, p. 407-514. In D. M. Hillis, C. Moritz, and B. K. Mable (ed.), Molecular systematics, 2nd ed. Sinauer Associates, Sunderland, MA.
-
(1996)
Molecular systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.K.2
Waddell, P.J.3
Hillis, D.M.4
-
75
-
-
0001878986
-
ADE-4: A multivariate analysis and graphical display software
-
Thioulouse, J., D. Chessel, S. Dolédec, and J.-M. Olivier. 1997. ADE-4: a multivariate analysis and graphical display software. Stat. Computing 7:75-83.
-
(1997)
Stat. Computing
, vol.7
, pp. 75-83
-
-
Thioulouse, J.1
Chessel, D.2
Dolédec, S.3
Olivier, J.-M.4
-
76
-
-
0031574072
-
The CLUSTAL-X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL-X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
77
-
-
33846803595
-
Cloning and sequencing of DNA components of Banana bunchy top virus Hainan isolate
-
Tien, E., J. Zhuang, and Z. X. Liu. 2004. Cloning and sequencing of DNA components of Banana bunchy top virus Hainan isolate. J. Agric. Biotechnol. 12:680-684.
-
(2004)
J. Agric. Biotechnol
, vol.12
, pp. 680-684
-
-
Tien, E.1
Zhuang, J.2
Liu, Z.X.3
-
78
-
-
0032708385
-
A single Rep protein initiates replication of multiple genome components of Faba bean necrotic yellows virus, a single-stranded DNA virus of plants
-
Timchenko, T., F. de Kouchkovsky, L. Katul, C. David, H. J. Vetten, and B. Gronenborn. 1999. A single Rep protein initiates replication of multiple genome components of Faba bean necrotic yellows virus, a single-stranded DNA virus of plants. J. Virol. 73:10173-10182.
-
(1999)
J. Virol
, vol.73
, pp. 10173-10182
-
-
Timchenko, T.1
de Kouchkovsky, F.2
Katul, L.3
David, C.4
Vetten, H.J.5
Gronenborn, B.6
-
79
-
-
33744807710
-
Infectivity of nanovirus DNAs: Induction of disease by cloned genome components of Faba bean necrotic yellow virus
-
Timchenko, T., L. Katul, M. Aronson, J. C. Vega-Arreguin, B. C. Ramirez, H. J. Vetten, and B. Gronenborn. 2006. Infectivity of nanovirus DNAs: induction of disease by cloned genome components of Faba bean necrotic yellow virus. J. Gen. Virol. 87:1735-1743.
-
(2006)
J. Gen. Virol
, vol.87
, pp. 1735-1743
-
-
Timchenko, T.1
Katul, L.2
Aronson, M.3
Vega-Arreguin, J.C.4
Ramirez, B.C.5
Vetten, H.J.6
Gronenborn, B.7
-
80
-
-
0034663139
-
The master Rep concept in nanovirus replication: Identification of missing genome components and potential for natural genetic reassortment
-
Timchenko, T., L. Katul, Y. Sano, F. de Kouchkovsky, H. J. Vetten, and B. Gronenborn. 2000. The master Rep concept in nanovirus replication: identification of missing genome components and potential for natural genetic reassortment. Virology 274:189-195.
-
(2000)
Virology
, vol.274
, pp. 189-195
-
-
Timchenko, T.1
Katul, L.2
Sano, Y.3
de Kouchkovsky, F.4
Vetten, H.J.5
Gronenborn, B.6
-
81
-
-
21644450047
-
Evidence of recombination between divergent hepatitis E viruses
-
van Cuyck, H., J. Fan, D. L. Robertson, and P. Roques. 2005. Evidence of recombination between divergent hepatitis E viruses. J. Virol. 79:9306-9314.
-
(2005)
J. Virol
, vol.79
, pp. 9306-9314
-
-
van Cuyck, H.1
Fan, J.2
Robertson, D.L.3
Roques, P.4
-
82
-
-
0033970718
-
Functional analysis of proteins encoded by banana bunchy top virus DNA-4 to -6
-
Wanitchakorn, R., G. J. Hafner, R. M. Harding, and J. L. Dale. 2000. Functional analysis of proteins encoded by banana bunchy top virus DNA-4 to -6. J. Gen. Virol. 81:299-306.
-
(2000)
J. Gen. Virol
, vol.81
, pp. 299-306
-
-
Wanitchakorn, R.1
Hafner, G.J.2
Harding, R.M.3
Dale, J.L.4
-
83
-
-
0030740311
-
Banana bunchy top virus DNA-3 encodes the viral coat protein
-
Wanitchakorn, R., R. M. Harding, and J. L. Dale. 1997. Banana bunchy top virus DNA-3 encodes the viral coat protein. Arch. Virol. 142:1673-1680.
-
(1997)
Arch. Virol
, vol.142
, pp. 1673-1680
-
-
Wanitchakorn, R.1
Harding, R.M.2
Dale, J.L.3
-
84
-
-
0034022175
-
Sequence variability in the coat protein gene of two groups of banana bunchy top isolates
-
Wanitchakorn, R., R. M. Harding, and J. L. Dale. 2000. Sequence variability in the coat protein gene of two groups of banana bunchy top isolates. Arch. Virol. 145:593-602.
-
(2000)
Arch. Virol
, vol.145
, pp. 593-602
-
-
Wanitchakorn, R.1
Harding, R.M.2
Dale, J.L.3
-
85
-
-
84989446394
-
Nucleic acid sequence phylogeny and random outgroups
-
Wheeler, W. C. 1990. Nucleic acid sequence phylogeny and random outgroups. Cladistics 6:363-368.
-
(1990)
Cladistics
, vol.6
, pp. 363-368
-
-
Wheeler, W.C.1
-
86
-
-
0028919370
-
Interspecific reassortment of genomic segments in the evolution of cucumoviruses
-
White, P. S., F. Morales, and M. J. Roossinck. 1995. Interspecific reassortment of genomic segments in the evolution of cucumoviruses. Virology 207:334-337.
-
(1995)
Virology
, vol.207
, pp. 334-337
-
-
White, P.S.1
Morales, F.2
Roossinck, M.J.3
-
87
-
-
2442469760
-
Purification and characterization of banana bunchy top virus
-
Wu, R. Y., and H. J. Su. 1990. Purification and characterization of banana bunchy top virus. J. Phytopathol. 128:153-160.
-
(1990)
J. Phytopathol
, vol.128
, pp. 153-160
-
-
Wu, R.Y.1
Su, H.J.2
-
88
-
-
0028134310
-
Nucleotide-sequences of 2 circular single-stranded DNAs associated with Banana bunchy top virus
-
Wu, R. Y., L. R. You, and T. S. Soong. 1994. Nucleotide-sequences of 2 circular single-stranded DNAs associated with Banana bunchy top virus. Phytopathology 84:952-958.
-
(1994)
Phytopathology
, vol.84
, pp. 952-958
-
-
Wu, R.Y.1
You, L.R.2
Soong, T.S.3
-
89
-
-
0029138965
-
Molecular-cloning, sequence-analysis, and detection of Banana bunchy top virus in Hawaii
-
Xie, W. S., and J. S. Hu. 1995. Molecular-cloning, sequence-analysis, and detection of Banana bunchy top virus in Hawaii. Phytopathology 85:339-347.
-
(1995)
Phytopathology
, vol.85
, pp. 339-347
-
-
Xie, W.S.1
Hu, J.S.2
-
90
-
-
33846814608
-
Cloning and sequencing of DNA component 4 of BBTV NS strain
-
Xu, C. X., H. P. Li, and H. G. Xiao. 2001. Cloning and sequencing of DNA component 4 of BBTV NS strain. Chin. J. Virol. 17:288.
-
(2001)
Chin. J. Virol
, vol.17
, pp. 288
-
-
Xu, C.X.1
Li, H.P.2
Xiao, H.G.3
-
91
-
-
0028298877
-
Genome characterization and identification of viral-associated dsDNA component of Banana bunchy top virus
-
Yen, H. H., H. J. Su, and Y. C. Chao. 1994. Genome characterization and identification of viral-associated dsDNA component of Banana bunchy top virus. Virology 198:645-652.
-
(1994)
Virology
, vol.198
, pp. 645-652
-
-
Yen, H.H.1
Su, H.J.2
Chao, Y.C.3
-
92
-
-
33846848763
-
Cloning and nucleotide sequence analysis of DNA-5 of Banana bunchy top virus NSP strain
-
Zheng, Y., H. P. Li, H. G. Xiao, and H. Z. Fan. 2005. Cloning and nucleotide sequence analysis of DNA-5 of Banana bunchy top virus NSP strain. Acta Phytopathol. Sinica 35:289-292.
-
(2005)
Acta Phytopathol. Sinica
, vol.35
, pp. 289-292
-
-
Zheng, Y.1
Li, H.P.2
Xiao, H.G.3
Fan, H.Z.4
|