Analysis of close proximity quenching of phosphorescent metalloporphyrin labels in oligonucleotide structures

Analytica Chimica Acta

Volumn 585, Issue 1, 2007, Pages 139-146

  Burke, M ^a   O'Sullivan, P J ^a   Ponomarev, G V ^b   Yashunsky, D V ^b   Papkovsky, D B ^a  

^a UNIVERSITY COLLEGE CORK   (Ireland)

^b INSTITUTE OF BIOMEDICAL CHEMISTRY   (Russian Federation)

Author keywords

Close proximity quenching; Hybridization assays; Metalloporphyrin labels; Oligonucleotide probes; Phosphorescence

Indexed keywords

BIOASSAY; DNA; ENERGY TRANSFER; MOLECULAR STRUCTURE; PHOSPHORESCENCE; QUENCHING;

CLOSE PROXIMITY QUENCHING; HYBRIDIZATION ASSAYS; METALLOPORPHYRIN LABELS; OLIGONUCLEOTIDE PROBES;

PORPHYRINS;

DOUBLE STRANDED DNA; METALLOPORPHYRIN; OLIGONUCLEOTIDE; PALLADIUM; PLATINUM;

ARTICLE; CHEMICAL ANALYSIS; CORRELATION ANALYSIS; DNA DETERMINATION; ENERGY TRANSFER; MOLECULAR BIOLOGY; PHOSPHORESCENCE; PHOTOCHEMICAL QUENCHING; PRIORITY JOURNAL;

BASE SEQUENCE; CHEMISTRY, ANALYTICAL; DNA; LUMINESCENT AGENTS; LUMINESCENT MEASUREMENTS; METALLOPORPHYRINS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE PROBES; OLIGONUCLEOTIDES; PALLADIUM; PLATINUM; PORPHYRINS;

EID: 33846643200     PISSN: 00032670     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aca.2006.12.025     Document Type: Article

References (34)

1. Wittwer C.T., Herrmann M.G., Moss A.A., and Rasmussen R.P. BioTechniques 22 (1997) 130-138
2. Edwards K.J., and Saunders N.A. J. Appl. Microbiol. 91 (2001) 29-37
3. Pfaffl M.W., Horgan G.W., and Dempfle L. Nucleic Acids Res. 30 (2002) e36
4. Maggi F., Fornai C., Zaccaro L., Morrica A., Vatteroni M.L., Isola P., Marchi S., Ricchiuti A., Pistello M., and Bendinelli M. J. Med. Virol. 64 (2001) 190-194
5. Kimura H., Morita M., Yabuta Y., Kuzushima K., Kato K., Kojima S., Matsuyama T., and Morishima T. J. Clin. Microbiol. 37 (1999) 132-136
6. Bates J.A., and Taylor E.J.A. Mol. Plant Pathol. 2 (2001) 275-280
7. Pahl A., Kühlbrandt U., Brune K., Röllinghoff M., and Gessner A. J. Clin. Microbiol. 37 (1999) 1958-1963
8. Higuchi R., Fockler C., Dollinger G., and Watson R. BioTechnology 11 (1993) 1026-1030
9. Lee L.G., Connell C.R., and Bloch W. Nucleic Acids Res. 21 (1993) 3761-3766
10. Tyagi S., and Kramer F.R. Nat. Biotechnol. 14 (1996) 303-308
11. Heller M.J., and Morrison L.E. Chemiluminescent and Fluorescent Probes for DNA Hybridisation (1985), Academic Press, Inc., New York
12. Kong D.-M., Huang Y.-P., Zhang X.-B., Yang W.-H., Shen H.-X., and Mi H.-F. Anal. Chim. Acta 491 (2003) 135-143
13. Thelwell N., Millington S., Solinas A., Booth J., and Brown T. Nucleic Acids Res. 28 (2000) 3752-3761
14. Lacowicz J.R. Principles of Fluorescence Spectroscopy (1999), Plenum Press, New York
15. Marras S.A., Kramer F.R., and Tyagi S. Nucleic Acids Res. 30 (2002) e122
16. Hemmila I., and Mukkala V.-M. Crit. Rev. Clin. Lab. Sci. 38 (2001) 441-519
17. Papkovsky D.B., and O'Riordan T.C. J. Fluoresc. 15 (2005) 569-584
18. Hurley D.J., and Tor Y. J. Am. Chem. Soc. 124 (2002) 13231-13241
19. O'Sullivan P.J., Burke M., Soini A.E., and Papkovsky D.B. Nucleic Acids Res. 30 (2002) e114
20. D.J. O'Shea, P.J. O'Sullivan, G.V. Ponomarev, D.B. Papkovsky, Anal. Chim. Acta 537 (2005) 111-117.
21. Burke M., O'Sullivan P., Soini A.E., Berney H., and Papkovsky D.B. Anal. Biochem. 320 (2003) 273-280
22. Gouterman M. In: Dolphin D. (Ed). The Porphyrins vol. 3 (1978), VCH, New York 1-165
23. Atwater B.W. J. Fluoresc. 2 (1992) 237-246
24. O'Riordan T.C., Soini A.E., and Papkovsky D.B. Anal. Biochem. 290 (2001) 366-375
25. Parkhurst K.M., and Parkhurst L.J. Biochemistry 34 (1995) 293-300
26. Bustamante C., Bryant Z., and Smith S.B. Nature 421 (2003) 423-427
27. Clegg R.M., Murchie A.I., Zechel A., and Lilley D.M. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 2994-2998
28. Goddard N.L., Bonnet G., Krichevsky O., and Libchaber A. Phys. Rev. Lett. 85 (2000) 2400-2403
29. Didenko V.V. Biotechniques 31 (2001) 1106-1121
30. Karvinen J., Laitala V., Makinen M.L., Mulari O., Tamminen J., Hermonen J., Hurskainen P., and Hemmila I. Anal. Chem. 76 (2004) 1429-1436
31. Yaron A., Carmel A., and Katchalskikatzir E. Anal. Biochem. 95 (1979) 228-235
32. Morrison L.E. J. Fluoresc. 9 (1999) 187-196
33. Morrison L.E., Halder T.C., and Stols L.M. Anal. Biochem. 183 (1989) 231-244
34. Heller M.J., Hennessy E., Ruth J.L., and Jablonski E. FASEB J. 46 (1987) 1968