Evaluation of the phosphorescent palladium(II)-coproporphyrin labels in separation-free hybridization assays

Analytical Biochemistry

Volumn 320, Issue 2, 2003, Pages 273-280

  Burke, Martina ^a   O'Sullivan, Paul J ^a   Soini, Aleksi E ^b   Berney, Helen ^c   Papkovsky, Dmitri B ^a  

^a UNIVERSITY COLLEGE CORK   (Ireland)

^b PO Box 51   (Finland)

^c UNIVERSITY COLLEGE CORK   (Ireland)

Author keywords

DNA probes; Hybridization assays; Pd porphyrins; Phosphorescence; Proximity quenching; Time resolved fluorescence

Indexed keywords

OLIGONUCLEOTIDES; PHOSPHORESCENCE; PORPHYRINS; QUENCHING; TEMPERATURE DISTRIBUTION;

COMPLEMENTARY SEQUENCES; DNA PROBE; HYBRIDIZATION ASSAY; OLIGONUCLEOTIDE PROBES; PD PORPHYRINS; PHOSPHORESCENCE SPECTRA; TEMPERATURE DEPENDENCE; TIME-RESOLVED FLUORESCENCE;

PALLADIUM COMPOUNDS;

COPROPORPHYRIN; OLIGONUCLEOTIDE; PALLADIUM COMPLEX; RHODAMINE;

ARTICLE; CHEMICAL ANALYSIS; CHEMICAL LABELING; EVALUATION; HYBRIDIZATION; OLIGONUCLEOTIDE PROBE; PHOSPHORESCENCE; PHOTOCHEMICAL QUENCHING; PRIORITY JOURNAL; QUANTUM YIELD; SEPARATION TECHNIQUE; SEQUENCE ANALYSIS; TEMPERATURE DEPENDENCE;

EID: 0042622450     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(03)00383-X     Document Type: Article

References (32)

1. Dahlen P., Iiati A., Mukkala V.M., Hurskainen P., Kwiatkowski M. The use of europium (Eu 3+) labeled primers in PCR amplification of specific target DNA. Mol. Cell. Probes. 5:1991;143-149.
2. Hukkanen V.J., Rehn T., Kaajander R., Sjoroos M., Waris M. Time resolved fluorometry PCR assay for rapid detection of Herpes simplex virus in cerebrospinal fluid. J. Clin. Microbiol. 38:2000;3214-3218.
3. Nazarenko I.A., Bhatnagar S.K., Hohman R.J. A closed tube format for amplification and detection of DNA based on energy transfer. Nucleic Acids Res. 25:1997;2516-2521.
4. Whitcombe D., Theaker J., Guy S.P., Brown T., Little S. Detection of PCR products using self-probing amplicons and fluorescence. Nat. Biotechnol. 17:1999;804-807.
5. Seveus L., Vaisala M., Syrjanen S., Sandberg M., Kuusisto A., Harju R., Salo J., Hemmila I., Kojola H., Soini E. Time resolved fluorescence imaging of europium chelate label in immunohistochemistry and in situ hybridisation. Cytometry. 13:1992;329-338.
6. van Hal N.L.W., Vorst O., van Houwelingen A.M.M.L., Kok E.J., Peijnenburg A., Aharoni A., van Tunen A., Keijer J. The application of microarrays in gene expression analysis. J. Biotechnol. 78:2000;271-280.
7. Guo Z., Guilfoyle R.A., Thiel A.J., Wang R., Smith L.M. Direct fluorescence analysis of genetic polymorphisms by hybridisation with oligonucleotide arrays on glass supports. Nucleic Acid Res. 22:1994;5456-5465.
8. Wittwer C.T., Ririe K.M., Andrew R.V., David D.A., Gundry R.A., Balis U.J. The LightCycler: a microvolume multisample fluorimeter with rapid temperature control. BioTechniques. 22:1997;176-181.
9. Lee L.G., Connell C.R., Bloch W. Allelic discrimination by nick translation PCR with fluorogenic probes. Nucleic Acids Res. 21:1993;3761-3766.
10. Livak K.J., Flood S.J.A., Marmaro J., Giusti W., Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridisation. PCR Methods Appl. 4:1995;1-6.
11. Tyagi S., Kramer F.R. Molecular beacons-probes that fluoresce upon hybridisation. Nat. Biotechnol. 14:1996;303-308.
12. Cardullo R.A., Agrawal S., Flores C., Zamecik P.C., Wolf D.E. Nucleic acid hybridisation by nonradiative fluorescence energy transfer. Proc. Natl. Acad. Sci. USA. 85:1988;8790-8794.
13. Nazarenko I., lowe B., Darfler M., Ikonomi P., Schuster D., Rashtchian A. Multiplex quantitative PCR using self-quenched primers labeled with a single fluorophore. Nucleic Acids Res. 30:2002;e37.
14. Nurmi J., Ylikoski A., Soukka T., Karp M., Lövgren A New label technology for the detection of specific polymerase chain reaction products in a closed tube. Nucleic Acid Res. 28:2000;E28-00.
15. Vet J.A.M., Majithia A.R., Marras S.A.E., Tyagi S., Dube S., Poiesz B.J., Kramer F.R. Multiplex detection of four pathogenic retroviruses using molecular beacons. Proc. Natl. Acad. Sci. USA. 96:1999;6394-6399.
16. Heihonen P., Iitiä A., Torresani T., Lövgren T. Simple triple label detection of seven cystic fibrosis mutations by time-resolved fluorometry. Clin. Chem. 43:1997;1142-1150.
17. Combton J. Nucleic acid sequence-based amplification. Nature. 350:1991;91-92.
18. Jean J., Blais B., Darveau A., Fliss I. Simultaneous detection of and identification of hepatitis A virus and rotavirus by multiplex nucleic acid sequence-based amplification (NASBA) and microtitre plate hybridisation system. J. Virol. Methods. 105:2002;123-132.
19. O'Sullivan P.J., Burke M., Soini A.E., Papkovsky D.B. Synthesis and performance evaluation of phosphorescent oligonucleotide probes for hybridisation assays. Nucleic Acid Res. 30:2002;e1-7.
20. O' Riordan T.C., Soini A.E., Papkovsky D.B. Monofunctional derivatives of coproporphyrins for phosphorescent labeling of proteins and binding assays. Anal. Biochem. 290:2001;366-375.
21. Soini A.E., Seveus L., Meltona N.J., Papkovsky D.B., Soini E. Phosphorescent metalloporphyrina as labels in time-resolved fluorescent microscopy: effect of mounting on emission intensity. Microsc. Res. Tech. 58:2002;125-131.
22. J. Hynes, S. Floyd, A.E. Soini, R. O'Connor, D.B. Papkovsky, Fluorescence based cell viability assay using water-soluble oxygen probes, J. Biomol. Screening 8 (2003) in press.
23. Savitski A.P., Papkovsky D.P., Ponomarev G.V., Berezin I.V. Phosphorescent immunoassay. Are metalloporphyrins alternative to rare earth fluorescent labels. Dokl. Akad. Nauk. SSSR. 304:1989;1005-1010.
24. Eastwood D., Gouterman XVIII M. Luminescence of (Co), (Ni), Pd, Pt complexes. J. Mol. Spectrosc. 35:1970;359-375.
25. A.E. Soini, D.V. Yashunsky, N.J. Meltola, G.V. Ponomarev, Influence of linker unit on performance of palladium(II) coproporphyrin labeling reagent and its bioconjugates, Luminescence (2003), in press.
26. O'Riordan T.C., Soini A.E., Soini J.T., Papkovsky D.B. Performance evaluation of phosphorescent porphyrin label; solid-state immunoassay of. α -fetoportein Anal. Biochem. 74:2002;5845-5850.
27. Soini A.E., Yashunsky D.V., Meltola N.J., Ponomarev G.V. Preparation of monofunctional and phosphorescent palladium(II) and platinum(II) coproporphyrin labeling reagents. J. Porphyrins Phthalocyanines. 5:2001;735-741.
28. Tyagi S., Bratu D.P., Kramer F.R. Multicolor molecular beacons for allele discrimination. Nat. Biotechnol. 16:1998;49-53.
29. Selvin P., Rana T., Hearst J. Luminescence resonance energy transfer. J. Am. Chem. Soc. 116:1994;6029-6030.
30. Lehinger A.L., Nelson D.L., Cox M.M. Principles of Biochemistry. second ed. 1993;Worth publishers, New York.
31. Lakowicz J.R. Principles of Fluorescence Spectroscopy. second ed. 1999;Kluwer Academic/Plenum Publishers, New York.
32. Allawi H.T., SantaLucia J. Jr. Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry. 36:1997;10581-10594.