-
1
-
-
0033851115
-
The chemical and biological versatility of riboflavin
-
Massey, V. (2000) The chemical and biological versatility of riboflavin. Biochem. Soc. Trans. 28, 283-296.
-
(2000)
Biochem. Soc. Trans
, vol.28
, pp. 283-296
-
-
Massey, V.1
-
2
-
-
0032573502
-
Arabidopsis NPH1: A flavoprotein with the properties of a photoreceptor for phototropism
-
Christie, J. M., P. Reymond, G. K. Powell, P. Bernasconi, A. A. Raibekas, E. Liscum and W. R. Briggs (1998) Arabidopsis NPH1: A flavoprotein with the properties of a photoreceptor for phototropism. Science 282, 1698-1701.
-
(1998)
Science
, vol.282
, pp. 1698-1701
-
-
Christie, J.M.1
Reymond, P.2
Powell, G.K.3
Bernasconi, P.4
Raibekas, A.A.5
Liscum, E.6
Briggs, W.R.7
-
3
-
-
0035810965
-
Arabidopsis nph1 and np11: Blue light receptors that mediate both phototropism and chloroplast relocation
-
Sakai, T., T. Kagawa, M. Kasahara, T. E. Swartz, J. M. Christie, W. R. Briggs, M. Wada and K. Okada (2001) Arabidopsis nph1 and np11: Blue light receptors that mediate both phototropism and chloroplast relocation. Proc. Natl. Acad. Sci. USA 98, 6969-6974.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6969-6974
-
-
Sakai, T.1
Kagawa, T.2
Kasahara, M.3
Swartz, T.E.4
Christie, J.M.5
Briggs, W.R.6
Wada, M.7
Okada, K.8
-
4
-
-
0035983657
-
Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii
-
Kasahara, M., T. E. Swartz, M. A. Olney, A. Onodera, N. Mochizuki, H. Fukuzawa, E. Asamizu, S. Tabata, H. Kanegae, M. Takano, J. M. Christie, A. Nagatani and W. R. Briggs (2002) Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol. 129, 762-773.
-
(2002)
Plant Physiol
, vol.129
, pp. 762-773
-
-
Kasahara, M.1
Swartz, T.E.2
Olney, M.A.3
Onodera, A.4
Mochizuki, N.5
Fukuzawa, H.6
Asamizu, E.7
Tabata, S.8
Kanegae, H.9
Takano, M.10
Christie, J.M.11
Nagatani, A.12
Briggs, W.R.13
-
5
-
-
0036224807
-
-
Losi, A., E. Polverini, B. Quest and W. Gartner (2002) First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 82, 2627-2634.
-
Losi, A., E. Polverini, B. Quest and W. Gartner (2002) First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 82, 2627-2634.
-
-
-
-
6
-
-
1142304289
-
-
Losi, A., B. Quest and W. Gartner (2003) Listening to the blue: The time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain. Photochem. Photobiol. Sci. 2, 759-766.
-
Losi, A., B. Quest and W. Gartner (2003) Listening to the blue: The time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain. Photochem. Photobiol. Sci. 2, 759-766.
-
-
-
-
7
-
-
22844446481
-
Initial characterization of a blue-light sensing, phototropin-related protein from Pseudomonas putida: A paradigm for an extended LOV construct
-
Krauss, U., A. Losi, W. Gartner, K. E. Jaeger and T. Eggert (2005) Initial characterization of a blue-light sensing, phototropin-related protein from Pseudomonas putida: A paradigm for an extended LOV construct. Phys. Chem. Chem. Phys. 7, 2804-2811.
-
(2005)
Phys. Chem. Chem. Phys
, vol.7
, pp. 2804-2811
-
-
Krauss, U.1
Losi, A.2
Gartner, W.3
Jaeger, K.E.4
Eggert, T.5
-
8
-
-
0034622586
-
Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin
-
Salomon, M., J. M. Christie, E. Knieb, U. Lempert and W. R. Briggs (2000) Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. Biochemistry 39, 9401-9410.
-
(2000)
Biochemistry
, vol.39
, pp. 9401-9410
-
-
Salomon, M.1
Christie, J.M.2
Knieb, E.3
Lempert, U.4
Briggs, W.R.5
-
9
-
-
0035853139
-
Structure of a flavin-binding plant photoreceptor domain: Insights into light-mediated signal transduction
-
Crosson, S. and K. Moffat (2001) Structure of a flavin-binding plant photoreceptor domain: Insights into light-mediated signal transduction. Proc. Natl. Acad. Sci. USA 98, 2995-3000.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 2995-3000
-
-
Crosson, S.1
Moffat, K.2
-
10
-
-
0036016438
-
Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch
-
Crosson, S. and K. Moffat (2002) Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell 14, 1067-1075.
-
(2002)
Plant Cell
, vol.14
, pp. 1067-1075
-
-
Crosson, S.1
Moffat, K.2
-
11
-
-
24944553332
-
Blue light-regulated molecular switch of Ser/Thr kinase in phototropin
-
Matsuoka, D. and S. Tokutomi (2005) Blue light-regulated molecular switch of Ser/Thr kinase in phototropin. Proc. Natl. Acad. Sci. USA 102, 13337-13342.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 13337-13342
-
-
Matsuoka, D.1
Tokutomi, S.2
-
12
-
-
3242747589
-
The bacterial counterparts of plant phototropins
-
Losi, A. (2004) The bacterial counterparts of plant phototropins. Photochem. Photobiol. Sci. 3, 566-574.
-
(2004)
Photochem. Photobiol. Sci
, vol.3
, pp. 566-574
-
-
Losi, A.1
-
13
-
-
0036804709
-
BLUF: A novel FAD-binding domain involved in sensory transduction in microorganisms
-
Gomelsky, M. and G. Klug (2002) BLUF: A novel FAD-binding domain involved in sensory transduction in microorganisms. Trends Biochem. Sci. 27, 497-500.
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 497-500
-
-
Gomelsky, M.1
Klug, G.2
-
14
-
-
2942657138
-
Identification of cryptochrome DASH from vertebrates
-
Daiyasu, H., T. Ishikawa, K. Kuma, S. Iwai, T. Todo and H. Toh (2004) Identification of cryptochrome DASH from vertebrates. Genes Cells 9, 479-495.
-
(2004)
Genes Cells
, vol.9
, pp. 479-495
-
-
Daiyasu, H.1
Ishikawa, T.2
Kuma, K.3
Iwai, S.4
Todo, T.5
Toh, H.6
-
15
-
-
0030606607
-
-
Kaneko, T., S. Sato, H. Kotani, A. Tanaka, E. Asamizu, Y. Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, T. Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, S. Okumura, S. Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda and S. Tabata (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3, 109-136.
-
Kaneko, T., S. Sato, H. Kotani, A. Tanaka, E. Asamizu, Y. Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, T. Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, S. Okumura, S. Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda and S. Tabata (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3, 109-136.
-
-
-
-
16
-
-
0035980822
-
Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
-
Kaneko, T., Y. Nakamura, C. P. Wolk, T. Kuritz, S. Sasamoto, A. Watanabe, M. Iriguchi, A. Ishikawa, K. Kawashima, T. Kimura, Y. Kishida, M. Kohara, M. Matsumoto, A. Matsuno, A. Muraki, N. Nakazaki, S. Shimpo, M. Sugimoto, M. Takazawa, M. Yamada, M. Yasuda and S. Tabata (2001) Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8, 205-213; 227-253.
-
(2001)
DNA Res
, vol.8
-
-
Kaneko, T.1
Nakamura, Y.2
Wolk, C.P.3
Kuritz, T.4
Sasamoto, S.5
Watanabe, A.6
Iriguchi, M.7
Ishikawa, A.8
Kawashima, K.9
Kimura, T.10
Kishida, Y.11
Kohara, M.12
Matsumoto, M.13
Matsuno, A.14
Muraki, A.15
Nakazaki, N.16
Shimpo, S.17
Sugimoto, M.18
Takazawa, M.19
Yamada, M.20
Yasuda, M.21
Tabata, S.22
more..
-
17
-
-
0035981243
-
Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium Anabaena sp. strain PCC 7120
-
Ohmori, M., M. Ikeuchi, N. Sato, P. Wolk, T. Kaneko, T. Ogawa, M. Kanehisa, S. Goto, S. Kawashima, S. Okamoto, H. Yoshimura, H. Katoh, T. Fujisawa, S. Ehira, A. Kamei, S. Yoshihara, R. Narikawa and S. Tabat (2001) Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8, 271-284.
-
(2001)
DNA Res
, vol.8
, pp. 271-284
-
-
Ohmori, M.1
Ikeuchi, M.2
Sato, N.3
Wolk, P.4
Kaneko, T.5
Ogawa, T.6
Kanehisa, M.7
Goto, S.8
Kawashima, S.9
Okamoto, S.10
Yoshimura, H.11
Katoh, H.12
Fujisawa, T.13
Ehira, S.14
Kamei, A.15
Yoshihara, S.16
Narikawa, R.17
Tabat, S.18
-
18
-
-
18244372493
-
The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1
-
Mackenzie, C., M. Choudhary, F. W. Larimer, P. F. Predki, S. Stilwagen, J. P. Armitage, R. D. Barber, T. J. Donohue, J. P. Hosler, J. E. Newman, J. P. Shapleigh, R. E. Sockett, J. Zeilstra-Ryalls and S. Kaplan (2001) The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1. Photosynth. Res. 70, 19-41.
-
(2001)
Photosynth. Res
, vol.70
, pp. 19-41
-
-
Mackenzie, C.1
Choudhary, M.2
Larimer, F.W.3
Predki, P.F.4
Stilwagen, S.5
Armitage, J.P.6
Barber, R.D.7
Donohue, T.J.8
Hosler, J.P.9
Newman, J.E.10
Shapleigh, J.P.11
Sockett, R.E.12
Zeilstra-Ryalls, J.13
Kaplan, S.14
-
19
-
-
0034660609
-
Bacterial cryptochrome and photolyase: Characterization of two photolyase-like genes of Synechocystis sp. PCC6803
-
Hitomi, K., K. Okamoto, H. Daiyasu, H. Miyashita, S. Iwai, H. Toh, M. Ishiura and T. Todo (2000) Bacterial cryptochrome and photolyase: Characterization of two photolyase-like genes of Synechocystis sp. PCC6803. Nucl. Acids Res. 28, 2353-2362.
-
(2000)
Nucl. Acids Res
, vol.28
, pp. 2353-2362
-
-
Hitomi, K.1
Okamoto, K.2
Daiyasu, H.3
Miyashita, H.4
Iwai, S.5
Toh, H.6
Ishiura, M.7
Todo, T.8
-
20
-
-
0037249267
-
Identification of a new cryptochrome class. Structure, function, and evolution
-
Brudler, R., K. Hitomi, H. Daiyasu, H. Toh, K. Kucho, M. Ishiura, M. Kanehisa, V. A. Roberts, T. Todo, J. A. Tainer and E. D. Getzoff (2003) Identification of a new cryptochrome class. Structure, function, and evolution. Mol. Cell 11, 59-67.
-
(2003)
Mol. Cell
, vol.11
, pp. 59-67
-
-
Brudler, R.1
Hitomi, K.2
Daiyasu, H.3
Toh, H.4
Kucho, K.5
Ishiura, M.6
Kanehisa, M.7
Roberts, V.A.8
Todo, T.9
Tainer, J.A.10
Getzoff, E.D.11
-
21
-
-
16344389152
-
Primary intermediate in the photocycle of a blue-light sensory BLUF FAD-protein, Tll0078, of Thermosynechococcus elongatus BP-1
-
Fukushima, Y., K. Okajima, Y. Shibata, M. Ikeuchi and S. Itoh (2005) Primary intermediate in the photocycle of a blue-light sensory BLUF FAD-protein, Tll0078, of Thermosynechococcus elongatus BP-1. Biochemistry 44, 5149-5158.
-
(2005)
Biochemistry
, vol.44
, pp. 5149-5158
-
-
Fukushima, Y.1
Okajima, K.2
Shibata, Y.3
Ikeuchi, M.4
Itoh, S.5
-
22
-
-
18144372698
-
Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain
-
Kita, A., K. Okajima, Y. Morimoto, M. Ikeuchi and K. Miki (2005) Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. J. Mol. Biol. 349, 1-9.
-
(2005)
J. Mol. Biol
, vol.349
, pp. 1-9
-
-
Kita, A.1
Okajima, K.2
Morimoto, Y.3
Ikeuchi, M.4
Miki, K.5
-
23
-
-
22344445758
-
Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria
-
Okajima, K., S. Yoshihara, Y. Fukushima, X. Geng, M. Katayama, S. Higashi, M. Watanabe, S. Sato, S. Tabata, Y. Shibata, S. Itoh and M. Ikeuchi (2005) Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria. J. Biochem. Tokyo 137, 741-750.
-
(2005)
J. Biochem. Tokyo
, vol.137
, pp. 741-750
-
-
Okajima, K.1
Yoshihara, S.2
Fukushima, Y.3
Geng, X.4
Katayama, M.5
Higashi, S.6
Watanabe, M.7
Sato, S.8
Tabata, S.9
Shibata, Y.10
Itoh, S.11
Ikeuchi, M.12
-
24
-
-
2442559284
-
Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of synechocystis sp. PCC6803
-
Masuda, S., K. Hasegawa, A. Ishii and T. A. Ono (2004) Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of synechocystis sp. PCC6803. Biochemistry 43, 5304-5313.
-
(2004)
Biochemistry
, vol.43
, pp. 5304-5313
-
-
Masuda, S.1
Hasegawa, K.2
Ishii, A.3
Ono, T.A.4
-
25
-
-
0030884102
-
PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox
-
Zhulin, I. B., B. L. Taylor and R. Dixon (1997) PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox. Trends Biochem. Sci. 22, 331-333.
-
(1997)
Trends Biochem. Sci
, vol.22
, pp. 331-333
-
-
Zhulin, I.B.1
Taylor, B.L.2
Dixon, R.3
-
26
-
-
11144288242
-
Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication
-
Narikawa, R., S. Okamoto, M. Ikeuchi and M. Ohmori (2004) Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication. DNA Res. 11, 69-81.
-
(2004)
DNA Res
, vol.11
, pp. 69-81
-
-
Narikawa, R.1
Okamoto, S.2
Ikeuchi, M.3
Ohmori, M.4
-
27
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller and D. J. Lipman (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl. Acids Res. 25, 3389-3402.
-
(1997)
Nucl. Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
28
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz, J., F. Milpetz, P. Bork and C. P. Ponting (1998) SMART, a simple modular architecture research tool: Identification of signaling domains. Proc. Natl. Acad. Sci. USA 95, 5857-5864.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
29
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall and E. L. Sonnhammer (2002) The Pfam protein families database. Nucl. Acids Res. 30, 276-280.
-
(2002)
Nucl. Acids Res
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
30
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin and D. G. Higgins (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25, 4876-4882.
-
(1997)
Nucl. Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
31
-
-
0035957226
-
Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor
-
Chang, A. L., J. R. Tuckerman, G. Gonzalez, R. Mayer, H. Weinhouse, G. Volman, D. Amikam, M. Benziman and M. A. Gilles-Gonzalez (2001) Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor. Biochemistry 40, 3420-3426.
-
(2001)
Biochemistry
, vol.40
, pp. 3420-3426
-
-
Chang, A.L.1
Tuckerman, J.R.2
Gonzalez, G.3
Mayer, R.4
Weinhouse, H.5
Volman, G.6
Amikam, D.7
Benziman, M.8
Gilles-Gonzalez, M.A.9
-
32
-
-
10344238965
-
Structural basis of activity and allosteric control of diguanylate cyclase
-
Chan, C., R. Paul, D. Samoray, N. C. Amiot, B. Giese, U. Jenal and T. Schirmer (2004) Structural basis of activity and allosteric control of diguanylate cyclase. Proc. Natl. Acad. Sci. USA 101, 17084-17089.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17084-17089
-
-
Chan, C.1
Paul, R.2
Samoray, D.3
Amiot, N.C.4
Giese, B.5
Jenal, U.6
Schirmer, T.7
-
33
-
-
0037380836
-
Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii
-
Fedorov, R., I. Schlichting, E. Hartmann, T. Domratcheva, M. Fuhrmann and P. Hegemann (2003) Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 84, 2474-2482.
-
(2003)
Biophys. J
, vol.84
, pp. 2474-2482
-
-
Fedorov, R.1
Schlichting, I.2
Hartmann, E.3
Domratcheva, T.4
Fuhrmann, M.5
Hegemann, P.6
|